FC920257

Overview
NameFC920257
Unique NameFC920257
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length502
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10304 contig Ccv1_Contig10304:67..568. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_SYNS9 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Synechococcus sp. (strain CC9902) GN=hemL PE=3 SV=2)

HSP 1 Score: 170.629 bits (431), Expect = 3.556e-42
Identity = 81/116 (69.83%), Postives = 94/116 (81.03%), Query Frame = 2
Query:  155 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQAC 502
            S+  F  A+ LMPGGV+SPVRAFKSVGGQPI FD VKG + WD+DGN+YIDY+GSWGPAI G    +V++AL E ++KGTSFGAPC LEN LAEMVI AVPS EM  FVNSGT+AC
Sbjct:    6 SQAIFGAAQGLMPGGVSSPVRAFKSVGGQPIVFDRVKGPYAWDVDGNKYIDYIGSWGPAICGHAHPEVISALQEAIEKGTSFGAPCALENTLAEMVIDAVPSVEMVRFVNSGTEAC 121          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_SYNPX (Glutamate-1-semialdehyde 2,1-aminomutase OS=Synechococcus sp. (strain WH8102) GN=hemL PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 3.556e-42
Identity = 81/116 (69.83%), Postives = 94/116 (81.03%), Query Frame = 2
Query:  155 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQAC 502
            S+  F  A+ LMPGGV+SPVRAFKSVGGQPI FD VKG + WD+DGN+YIDY+GSWGPAI G    +V++AL E ++KGTSFGAPC LEN LAEMVI AVPS EM  FVNSGT+AC
Sbjct:    6 SQAIFGAAQGLMPGGVSSPVRAFKSVGGQPIVFDRVKGPYAWDVDGNKYIDYIGSWGPAICGHAHPEVISALQEAIEKGTSFGAPCALENTLAEMVIDAVPSVEMVRFVNSGTEAC 121          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_SYNY3 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Synechocystis sp. (strain PCC 6803) GN=hemL PE=3 SV=2)

HSP 1 Score: 170.244 bits (430), Expect = 4.644e-42
Identity = 84/121 (69.42%), Postives = 97/121 (80.17%), Query Frame = 2
Query:  140 ITLKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQAC 502
            IT K SEE F  A+ LMPGGV+SPVRAFKSVGGQPI FD V+G+ +WD+DGN+YIDYVG+WGPAI G     V++AL + + KGTSFGAPC  ENVLAEMVI AVPS EM  FVNSGT+AC
Sbjct:    8 ITTK-SEEIFAAAQHLMPGGVSSPVRAFKSVGGQPIVFDRVEGAQIWDVDGNQYIDYVGTWGPAICGHAHPDVISALKQALDKGTSFGAPCAQENVLAEMVIDAVPSIEMVRFVNSGTEAC 127          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_MICAN (Glutamate-1-semialdehyde 2,1-aminomutase OS=Microcystis aeruginosa (strain NIES-843) GN=hemL PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 4.644e-42
Identity = 81/116 (69.83%), Postives = 98/116 (84.48%), Query Frame = 2
Query:  155 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQAC 502
            S+E F  A++LMPGGV+SPVRAFKSVGGQPI F+SVKG+++ D+DGNEYIDYVG+WGPAI G    +V+AAL + + KGTSFGAPC+ EN+LAEMVI AVPS EM  FVNSGT+AC
Sbjct:   12 SKEIFTAAQKLMPGGVSSPVRAFKSVGGQPIVFESVKGAYIRDVDGNEYIDYVGTWGPAICGHAHPEVIAALHDALDKGTSFGAPCVQENILAEMVIDAVPSIEMVRFVNSGTEAC 127          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_SYNP6 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=hemL PE=1 SV=4)

HSP 1 Score: 169.859 bits (429), Expect = 6.066e-42
Identity = 82/116 (70.69%), Postives = 94/116 (81.03%), Query Frame = 2
Query:  155 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQAC 502
            S+E F  A++LMPGGV+SPVRAFKSVGGQPI FD VK ++ WD+DGN YIDYVG+WGPAI G    +V+ AL   M+KGTSFGAPC LENVLAEMVI AVPS EM  FVNSGT+AC
Sbjct:   12 SDEIFAAAQKLMPGGVSSPVRAFKSVGGQPIVFDRVKDAYAWDVDGNRYIDYVGTWGPAICGHAHPEVIEALKVAMEKGTSFGAPCALENVLAEMVIDAVPSIEMVRFVNSGTEAC 127          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_SYNE7 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Synechococcus elongatus (strain PCC 7942) GN=hemL PE=1 SV=3)

HSP 1 Score: 169.859 bits (429), Expect = 6.066e-42
Identity = 82/116 (70.69%), Postives = 94/116 (81.03%), Query Frame = 2
Query:  155 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQAC 502
            S+E F  A++LMPGGV+SPVRAFKSVGGQPI FD VK ++ WD+DGN YIDYVG+WGPAI G    +V+ AL   M+KGTSFGAPC LENVLAEMVI AVPS EM  FVNSGT+AC
Sbjct:   12 SDEIFAAAQKLMPGGVSSPVRAFKSVGGQPIVFDRVKDAYAWDVDGNRYIDYVGTWGPAICGHAHPEVIEALKVAMEKGTSFGAPCALENVLAEMVIDAVPSIEMVRFVNSGTEAC 127          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_PROMA (Glutamate-1-semialdehyde 2,1-aminomutase OS=Prochlorococcus marinus GN=hemL PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 6.066e-42
Identity = 81/117 (69.23%), Postives = 95/117 (81.20%), Query Frame = 2
Query:  152 NSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQAC 502
            NS+  F+ A+ELMPGGV+SPVRAFKSV G PI FD VKG++ WD+DGN +IDYVGSWGPAI G    +V+A+L E ++KGTSFGAPC LEN LAEMVI AVPS EM  FVNSGT+AC
Sbjct:    9 NSQAVFHAAQELMPGGVSSPVRAFKSVNGDPIVFDRVKGAYAWDLDGNRFIDYVGSWGPAICGHSHPEVIASLQEALEKGTSFGAPCELENKLAEMVIEAVPSVEMVRFVNSGTEAC 125          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_CYAP7 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Cyanothece sp. (strain PCC 7424) GN=hemL PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 6.066e-42
Identity = 79/116 (68.10%), Postives = 96/116 (82.76%), Query Frame = 2
Query:  155 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQAC 502
            SEE F  A++LMPGGV+SPVRAFKSVGGQPI FD V+G+++WD+D N+YIDYVG+WGPAI G     V++AL + + KGTSFGAPC+ EN+LAEMVI AVPS EM  FVNSGT+AC
Sbjct:   12 SEEIFTAAQKLMPGGVSSPVRAFKSVGGQPIVFDHVEGAYIWDVDNNQYIDYVGTWGPAICGHAHPDVISALHKALDKGTSFGAPCMQENILAEMVIDAVPSIEMVRFVNSGTEAC 127          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_PROM3 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Prochlorococcus marinus (strain MIT 9303) GN=hemL PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 1.765e-41
Identity = 79/116 (68.10%), Postives = 95/116 (81.90%), Query Frame = 2
Query:  155 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQAC 502
            S+  F+ A+ LMPGGV+SPVRAF+SVGGQPI FD VKG++ WD+DGN +IDY+GSWGPAI G    +V+AAL + ++KGTSFGAPC LEN LAEMVI AVPS EM  FVNSGT+AC
Sbjct:    6 SQAIFSAAQRLMPGGVSSPVRAFRSVGGQPIVFDRVKGAYAWDVDGNRFIDYIGSWGPAICGHAHPEVIAALQDALEKGTSFGAPCELENQLAEMVIDAVPSVEMVRFVNSGTEAC 121          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_CHLRE (Glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic OS=Chlamydomonas reinhardtii GN=GSA PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 1.765e-41
Identity = 82/121 (67.77%), Postives = 96/121 (79.34%), Query Frame = 2
Query:  140 ITLKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQAC 502
            +  K SEE F  A+EL+PGGVNSPVRAF+SVGG PI FD VKG++ WD+DGN+YIDYVGSWGPAI G  +D+V  AL   + KGTSFGAPC LENVLA+MVI  VPS EM  FV+SGT+AC
Sbjct:   37 LVTKRSEEIFKEAQELLPGGVNSPVRAFRSVGGGPIVFDRVKGAYCWDVDGNKYIDYVGSWGPAICGHGNDEVNNALKAQIDKGTSFGAPCELENVLAKMVIDRVPSVEMVRFVSSGTEAC 157          
The following BLAST results are available for this feature:
BLAST of FC920257 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GSA_SYNS93.556e-4269.83Glutamate-1-semialdehyde 2,1-aminomutase OS=Synech... [more]
GSA_SYNPX3.556e-4269.83Glutamate-1-semialdehyde 2,1-aminomutase OS=Synech... [more]
GSA_SYNY34.644e-4269.42Glutamate-1-semialdehyde 2,1-aminomutase OS=Synech... [more]
GSA_MICAN4.644e-4269.83Glutamate-1-semialdehyde 2,1-aminomutase OS=Microc... [more]
GSA_SYNP66.066e-4270.69Glutamate-1-semialdehyde 2,1-aminomutase OS=Synech... [more]
GSA_SYNE76.066e-4270.69Glutamate-1-semialdehyde 2,1-aminomutase OS=Synech... [more]
GSA_PROMA6.066e-4269.23Glutamate-1-semialdehyde 2,1-aminomutase OS=Prochl... [more]
GSA_CYAP76.066e-4268.10Glutamate-1-semialdehyde 2,1-aminomutase OS=Cyanot... [more]
GSA_PROM31.765e-4168.10Glutamate-1-semialdehyde 2,1-aminomutase OS=Prochl... [more]
GSA_CHLRE1.765e-4167.77Glutamate-1-semialdehyde 2,1-aminomutase, chloropl... [more]

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Properties
Property NameValue
Genbank descriptionC32006A03EF RVDevelop1 Citrus clementina cDNA clone C32006A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920257 ID=FC920257; Name=FC920257; organism=Citrus clementina; type=EST; length=502bp
GGCAGCTACAATTACAGGGGTAGGAGTTGGGTTAGGGTTTTCATGTTCAT
CAAAGCTCACCAAGAGAATTTCTTCTTCTACTGGATCCTCTCGCTGTAGT
GTTAAAATGTCGGTCTCTGTTGAGGAGCAGAAGAAAAATATCACTTTAAA
AAACTCTGAAGAAGCTTTCAATGTCGCCAAGGAATTGATGCCTGGAGGTG
TAAATTCACCTGTACGTGCCTTCAAATCTGTTGGTGGTCAACCTATTGAG
TTTGATTCCGTCAAGGGCTCACACATGTGGGATATCGATGGCAACGAGTA
CATTGACTATGTAGGTTCTTGGGGGCCGGCAATTATTGGTCAGCCAGATG
ATCAGGTACTAGCAGCCTTGGGTGAAACAATGAAGAAAGGAACCAGCTTT
GGTGCTCCTTGTCTTCTAGAGAATGTTCTTGCAGAAATGGTAATCTCAGC
TGTTCCAAGCAGAGAAATGCGTTGTTTTGTTAACTCAGGCACACAAGCAT
GC
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