FC920257

Overview
NameFC920257
Unique NameFC920257
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length502
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10304 contig Ccv1_Contig10304:67..568. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA1_STAAT (Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=hemL1 PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 4.357e-32
Identity = 73/115 (63.48%), Postives = 84/115 (73.04%), Query Frame = 2 
Query:  155 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            SEEA  VA+ LMPGGVNSPVRAFKSV    I  D  KGS ++DIDGNEYIDYV SWGP I+G  D QV++ L E + KGTSFGA  LLEN LA++VI  VPS E    V+SGT+A
Sbjct:    6 SEEAMKVAETLMPGGVNSPVRAFKSVDTPAIFMDHGKGSKIYDIDGNEYIDYVLSWGPLILGHRDPQVISHLHEAIDKGTSFGASTLLENKLAQLVIDRVPSIEKVRMVSSGTEA 120
[Close]
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA1_STAAS (Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Staphylococcus aureus (strain MSSA476) GN=hemL1 PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 4.357e-32
Identity = 73/115 (63.48%), Postives = 84/115 (73.04%), Query Frame = 2 
Query:  155 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            SEEA  VA+ LMPGGVNSPVRAFKSV    I  D  KGS ++DIDGNEYIDYV SWGP I+G  D QV++ L E + KGTSFGA  LLEN LA++VI  VPS E    V+SGT+A
Sbjct:    6 SEEAMKVAETLMPGGVNSPVRAFKSVDTPAIFMDHGKGSKIYDIDGNEYIDYVLSWGPLILGHRDPQVISHLHEAIDKGTSFGASTLLENKLAQLVIDRVPSIEKVRMVSSGTEA 120
[Close]
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA1_STAAR (Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Staphylococcus aureus (strain MRSA252) GN=hemL1 PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 4.357e-32
Identity = 73/115 (63.48%), Postives = 84/115 (73.04%), Query Frame = 2 
Query:  155 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            SEEA  VA+ LMPGGVNSPVRAFKSV    I  D  KGS ++DIDGNEYIDYV SWGP I+G  D QV++ L E + KGTSFGA  LLEN LA++VI  VPS E    V+SGT+A
Sbjct:    6 SEEAMKVAETLMPGGVNSPVRAFKSVDTPAIFMDHGKGSKIYDIDGNEYIDYVLSWGPLILGHRDPQVISHLHEAIDKGTSFGASTLLENKLAQLVIDRVPSIEKVRMVSSGTEA 120
[Close]
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA1_STAAN (Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Staphylococcus aureus (strain N315) GN=hemL1 PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 4.357e-32
Identity = 73/115 (63.48%), Postives = 84/115 (73.04%), Query Frame = 2 
Query:  155 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            SEEA  VA+ LMPGGVNSPVRAFKSV    I  D  KGS ++DIDGNEYIDYV SWGP I+G  D QV++ L E + KGTSFGA  LLEN LA++VI  VPS E    V+SGT+A
Sbjct:    6 SEEAMKVAETLMPGGVNSPVRAFKSVDTPAIFMDHGKGSKIYDIDGNEYIDYVLSWGPLILGHRDPQVISHLHEAIDKGTSFGASTLLENKLAQLVIDRVPSIEKVRMVSSGTEA 120
[Close]
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA1_STAAM (Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=hemL1 PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 4.357e-32
Identity = 73/115 (63.48%), Postives = 84/115 (73.04%), Query Frame = 2 
Query:  155 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            SEEA  VA+ LMPGGVNSPVRAFKSV    I  D  KGS ++DIDGNEYIDYV SWGP I+G  D QV++ L E + KGTSFGA  LLEN LA++VI  VPS E    V+SGT+A
Sbjct:    6 SEEAMKVAETLMPGGVNSPVRAFKSVDTPAIFMDHGKGSKIYDIDGNEYIDYVLSWGPLILGHRDPQVISHLHEAIDKGTSFGASTLLENKLAQLVIDRVPSIEKVRMVSSGTEA 120
[Close]
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA1_STAAE (Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Staphylococcus aureus (strain Newman) GN=hemL1 PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 4.357e-32
Identity = 73/115 (63.48%), Postives = 84/115 (73.04%), Query Frame = 2 
Query:  155 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            SEEA  VA+ LMPGGVNSPVRAFKSV    I  D  KGS ++DIDGNEYIDYV SWGP I+G  D QV++ L E + KGTSFGA  LLEN LA++VI  VPS E    V+SGT+A
Sbjct:    6 SEEAMKVAETLMPGGVNSPVRAFKSVDTPAIFMDHGKGSKIYDIDGNEYIDYVLSWGPLILGHRDPQVISHLHEAIDKGTSFGASTLLENKLAQLVIDRVPSIEKVRMVSSGTEA 120
[Close]
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA1_STAAC (Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Staphylococcus aureus (strain COL) GN=hemL1 PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 4.357e-32
Identity = 73/115 (63.48%), Postives = 84/115 (73.04%), Query Frame = 2 
Query:  155 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            SEEA  VA+ LMPGGVNSPVRAFKSV    I  D  KGS ++DIDGNEYIDYV SWGP I+G  D QV++ L E + KGTSFGA  LLEN LA++VI  VPS E    V+SGT+A
Sbjct:    6 SEEAMKVAETLMPGGVNSPVRAFKSVDTPAIFMDHGKGSKIYDIDGNEYIDYVLSWGPLILGHRDPQVISHLHEAIDKGTSFGASTLLENKLAQLVIDRVPSIEKVRMVSSGTEA 120
[Close]
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA1_STAAB (Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=hemL1 PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 4.357e-32
Identity = 73/115 (63.48%), Postives = 84/115 (73.04%), Query Frame = 2 
Query:  155 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            SEEA  VA+ LMPGGVNSPVRAFKSV    I  D  KGS ++DIDGNEYIDYV SWGP I+G  D QV++ L E + KGTSFGA  LLEN LA++VI  VPS E    V+SGT+A
Sbjct:    6 SEEAMKVAETLMPGGVNSPVRAFKSVDTPAIFMDHGKGSKIYDIDGNEYIDYVLSWGPLILGHRDPQVISHLHEAIDKGTSFGASTLLENKLAQLVIDRVPSIEKVRMVSSGTEA 120
[Close]
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA1_STAA9 (Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Staphylococcus aureus (strain JH9) GN=hemL1 PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 4.357e-32
Identity = 73/115 (63.48%), Postives = 84/115 (73.04%), Query Frame = 2 
Query:  155 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            SEEA  VA+ LMPGGVNSPVRAFKSV    I  D  KGS ++DIDGNEYIDYV SWGP I+G  D QV++ L E + KGTSFGA  LLEN LA++VI  VPS E    V+SGT+A
Sbjct:    6 SEEAMKVAETLMPGGVNSPVRAFKSVDTPAIFMDHGKGSKIYDIDGNEYIDYVLSWGPLILGHRDPQVISHLHEAIDKGTSFGASTLLENKLAQLVIDRVPSIEKVRMVSSGTEA 120
[Close]
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA1_STAA8 (Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Staphylococcus aureus (strain NCTC 8325) GN=hemL1 PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 4.357e-32
Identity = 73/115 (63.48%), Postives = 84/115 (73.04%), Query Frame = 2 
Query:  155 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            SEEA  VA+ LMPGGVNSPVRAFKSV    I  D  KGS ++DIDGNEYIDYV SWGP I+G  D QV++ L E + KGTSFGA  LLEN LA++VI  VPS E    V+SGT+A
Sbjct:    6 SEEAMKVAETLMPGGVNSPVRAFKSVDTPAIFMDHGKGSKIYDIDGNEYIDYVLSWGPLILGHRDPQVISHLHEAIDKGTSFGASTLLENKLAQLVIDRVPSIEKVRMVSSGTEA 120
The following BLAST results are available for this feature:
BLAST of FC920257 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GSA1_STAAT4.357e-3263.48Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Stap... [more]
GSA1_STAAS4.357e-3263.48Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Stap... [more]
GSA1_STAAR4.357e-3263.48Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Stap... [more]
GSA1_STAAN4.357e-3263.48Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Stap... [more]
GSA1_STAAM4.357e-3263.48Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Stap... [more]
GSA1_STAAE4.357e-3263.48Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Stap... [more]
GSA1_STAAC4.357e-3263.48Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Stap... [more]
GSA1_STAAB4.357e-3263.48Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Stap... [more]
GSA1_STAA94.357e-3263.48Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Stap... [more]
GSA1_STAA84.357e-3263.48Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Stap... [more]

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Properties
Property NameValue
Genbank descriptionC32006A03EF RVDevelop1 Citrus clementina cDNA clone C32006A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920257 ID=FC920257; Name=FC920257; organism=Citrus clementina; type=EST; length=502bp
GGCAGCTACAATTACAGGGGTAGGAGTTGGGTTAGGGTTTTCATGTTCAT
CAAAGCTCACCAAGAGAATTTCTTCTTCTACTGGATCCTCTCGCTGTAGT
GTTAAAATGTCGGTCTCTGTTGAGGAGCAGAAGAAAAATATCACTTTAAA
AAACTCTGAAGAAGCTTTCAATGTCGCCAAGGAATTGATGCCTGGAGGTG
TAAATTCACCTGTACGTGCCTTCAAATCTGTTGGTGGTCAACCTATTGAG
TTTGATTCCGTCAAGGGCTCACACATGTGGGATATCGATGGCAACGAGTA
CATTGACTATGTAGGTTCTTGGGGGCCGGCAATTATTGGTCAGCCAGATG
ATCAGGTACTAGCAGCCTTGGGTGAAACAATGAAGAAAGGAACCAGCTTT
GGTGCTCCTTGTCTTCTAGAGAATGTTCTTGCAGAAATGGTAATCTCAGC
TGTTCCAAGCAGAGAAATGCGTTGTTTTGTTAACTCAGGCACACAAGCAT
GC
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