FC920257

Overview
NameFC920257
Unique NameFC920257
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length502
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10304 contig Ccv1_Contig10304:67..568. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA1_STAA3 (Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Staphylococcus aureus (strain USA300) GN=hemL1 PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 4.357e-32
Identity = 73/115 (63.48%), Postives = 84/115 (73.04%), Query Frame = 2
Query:  155 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            SEEA  VA+ LMPGGVNSPVRAFKSV    I  D  KGS ++DIDGNEYIDYV SWGP I+G  D QV++ L E + KGTSFGA  LLEN LA++VI  VPS E    V+SGT+A
Sbjct:    6 SEEAMKVAETLMPGGVNSPVRAFKSVDTPAIFMDHGKGSKIYDIDGNEYIDYVLSWGPLILGHRDPQVISHLHEAIDKGTSFGASTLLENKLAQLVIDRVPSIEKVRMVSSGTEA 120          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA1_STAA2 (Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Staphylococcus aureus (strain JH1) GN=hemL1 PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 4.357e-32
Identity = 73/115 (63.48%), Postives = 84/115 (73.04%), Query Frame = 2
Query:  155 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            SEEA  VA+ LMPGGVNSPVRAFKSV    I  D  KGS ++DIDGNEYIDYV SWGP I+G  D QV++ L E + KGTSFGA  LLEN LA++VI  VPS E    V+SGT+A
Sbjct:    6 SEEAMKVAETLMPGGVNSPVRAFKSVDTPAIFMDHGKGSKIYDIDGNEYIDYVLSWGPLILGHRDPQVISHLHEAIDKGTSFGASTLLENKLAQLVIDRVPSIEKVRMVSSGTEA 120          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA1_STAA1 (Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=hemL1 PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 4.357e-32
Identity = 73/115 (63.48%), Postives = 84/115 (73.04%), Query Frame = 2
Query:  155 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            SEEA  VA+ LMPGGVNSPVRAFKSV    I  D  KGS ++DIDGNEYIDYV SWGP I+G  D QV++ L E + KGTSFGA  LLEN LA++VI  VPS E    V+SGT+A
Sbjct:    6 SEEAMKVAETLMPGGVNSPVRAFKSVDTPAIFMDHGKGSKIYDIDGNEYIDYVLSWGPLILGHRDPQVISHLHEAIDKGTSFGASTLLENKLAQLVIDRVPSIEKVRMVSSGTEA 120          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_CARHZ (Glutamate-1-semialdehyde 2,1-aminomutase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=hemL PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 5.690e-32
Identity = 67/120 (55.83%), Postives = 89/120 (74.17%), Query Frame = 2
Query:  140 ITLKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            + +  S EAF+ AK+++PGGVNSPVRAFKSVG  P+  +  +GS ++DIDGN YIDYVGSWGP I+G    +V  AL   +KKGTSFGAP LLE  +AE++++A P+ +M   VNSGT+A
Sbjct:    3 LKIDRSIEAFSEAKKVIPGGVNSPVRAFKSVGLNPVFIERGEGSKIYDIDGNCYIDYVGSWGPLILGHRHPKVEEALANCLKKGTSFGAPTLLETEMAEIIVNAFPAMDMVRMVNSGTEA 122          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA2_BACCN (Glutamate-1-semialdehyde 2,1-aminomutase 2 OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=hemL2 PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 2.162e-31
Identity = 69/118 (58.47%), Postives = 87/118 (73.73%), Query Frame = 2
Query:  146 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            L  S +AF  A++LMPGGVNSPVRAFKSVG  P+  +  KGS ++DIDGNEYIDYV SWGP I G  +++V+ +L    +KGTSFGAP  +EN LA++VI  VPS E+   VNSGT+A
Sbjct:    4 LDKSIKAFEEAQDLMPGGVNSPVRAFKSVGMNPLFMEQGKGSKVYDIDGNEYIDYVLSWGPLIHGHANERVVESLKAVAEKGTSFGAPTEIENKLAQLVIERVPSIEIVRMVNSGTEA 121          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA1_MACCJ (Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Macrococcus caseolyticus (strain JCSC5402) GN=hemL1 PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 2.162e-31
Identity = 70/115 (60.87%), Postives = 83/115 (72.17%), Query Frame = 2
Query:  155 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            S++AF  A  LMPGGVNSPVRAFKSV   PI  +  KGS ++DIDGNEYIDYV SWGP I+G  +D V  AL + +  GTSFGAP  LEN +AE+VI  VPS EM   V+SGT+A
Sbjct:    6 SKQAFKEAVNLMPGGVNSPVRAFKSVDMDPIFMERGKGSKIYDIDGNEYIDYVLSWGPLILGHANDTVTGALNKAVLNGTSFGAPTELENKMAELVIERVPSIEMVRMVSSGTEA 120          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA2_GEOTN (Glutamate-1-semialdehyde 2,1-aminomutase 2 OS=Geobacillus thermodenitrificans (strain NG80-2) GN=hemL2 PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 2.824e-31
Identity = 70/117 (59.83%), Postives = 85/117 (72.65%), Query Frame = 2
Query:  149 KNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            + S+ A+  A  LMPGGVNSPVRAFKSVG  PI     +G+ ++DIDGNEYIDYV SWGP I+G  D QV+ AL    ++GTSFGAP LLEN LA++VI  VPS E+   VNSGT+A
Sbjct:    5 ERSKAAYEEAVTLMPGGVNSPVRAFKSVGMTPIFMARGQGAKIYDIDGNEYIDYVLSWGPLILGHADPQVVEALKRVAEQGTSFGAPTLLENELAKLVIERVPSVEIVRMVNSGTEA 121          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA2_BACWK (Glutamate-1-semialdehyde 2,1-aminomutase 2 OS=Bacillus weihenstephanensis (strain KBAB4) GN=hemL2 PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 2.824e-31
Identity = 69/112 (61.61%), Postives = 83/112 (74.11%), Query Frame = 2
Query:  164 AFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            AF  A+ LMPGGVNSPVRAFKSVG  P+  +  KGS ++DIDGNEYIDYV SWGP I G  +D+V+ AL    +KGTSFGAP  +EN LA++VI  VPS E+   VNSGT+A
Sbjct:   10 AFEEAQNLMPGGVNSPVRAFKSVGMNPLFMERGKGSKVYDIDGNEYIDYVLSWGPLIHGHANDRVVEALKAVAEKGTSFGAPTEIENKLAQLVIERVPSIEIVRMVNSGTEA 121          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA2_BACCR (Glutamate-1-semialdehyde 2,1-aminomutase 2 OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=hemL2 PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 3.688e-31
Identity = 68/112 (60.71%), Postives = 84/112 (75.00%), Query Frame = 2
Query:  164 AFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            AF  A++LMPGGVNSPVRAFKSVG  P+  +  KGS ++DIDGNEYIDYV SWGP I G  +D+V+ AL    ++GTSFGAP  +EN LA++VI  VPS E+   VNSGT+A
Sbjct:   10 AFEEAQDLMPGGVNSPVRAFKSVGMNPLFMERGKGSKVYDIDGNEYIDYVLSWGPLIHGHANDRVVEALKSVAERGTSFGAPTEIENKLAKLVIERVPSIEIVRMVNSGTEA 121          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA2_BACC4 (Glutamate-1-semialdehyde 2,1-aminomutase 2 OS=Bacillus cereus (strain B4264) GN=hemL2 PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 3.688e-31
Identity = 68/112 (60.71%), Postives = 84/112 (75.00%), Query Frame = 2
Query:  164 AFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            AF  A++LMPGGVNSPVRAFKSVG  P+  +  KGS ++DIDGNEYIDYV SWGP I G  +D+V+ AL    ++GTSFGAP  +EN LA++VI  VPS E+   VNSGT+A
Sbjct:   10 AFEEAQDLMPGGVNSPVRAFKSVGMNPLFMERGKGSKVYDIDGNEYIDYVLSWGPLIHGHANDRVVEALKSVAERGTSFGAPTEIENKLAKLVIERVPSIEIVRMVNSGTEA 121          
The following BLAST results are available for this feature:
BLAST of FC920257 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GSA1_STAA34.357e-3263.48Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Stap... [more]
GSA1_STAA24.357e-3263.48Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Stap... [more]
GSA1_STAA14.357e-3263.48Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Stap... [more]
GSA_CARHZ5.690e-3255.83Glutamate-1-semialdehyde 2,1-aminomutase OS=Carbox... [more]
GSA2_BACCN2.162e-3158.47Glutamate-1-semialdehyde 2,1-aminomutase 2 OS=Baci... [more]
GSA1_MACCJ2.162e-3160.87Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Macr... [more]
GSA2_GEOTN2.824e-3159.83Glutamate-1-semialdehyde 2,1-aminomutase 2 OS=Geob... [more]
GSA2_BACWK2.824e-3161.61Glutamate-1-semialdehyde 2,1-aminomutase 2 OS=Baci... [more]
GSA2_BACCR3.688e-3160.71Glutamate-1-semialdehyde 2,1-aminomutase 2 OS=Baci... [more]
GSA2_BACC43.688e-3160.71Glutamate-1-semialdehyde 2,1-aminomutase 2 OS=Baci... [more]

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Properties
Property NameValue
Genbank descriptionC32006A03EF RVDevelop1 Citrus clementina cDNA clone C32006A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920257 ID=FC920257; Name=FC920257; organism=Citrus clementina; type=EST; length=502bp
GGCAGCTACAATTACAGGGGTAGGAGTTGGGTTAGGGTTTTCATGTTCAT
CAAAGCTCACCAAGAGAATTTCTTCTTCTACTGGATCCTCTCGCTGTAGT
GTTAAAATGTCGGTCTCTGTTGAGGAGCAGAAGAAAAATATCACTTTAAA
AAACTCTGAAGAAGCTTTCAATGTCGCCAAGGAATTGATGCCTGGAGGTG
TAAATTCACCTGTACGTGCCTTCAAATCTGTTGGTGGTCAACCTATTGAG
TTTGATTCCGTCAAGGGCTCACACATGTGGGATATCGATGGCAACGAGTA
CATTGACTATGTAGGTTCTTGGGGGCCGGCAATTATTGGTCAGCCAGATG
ATCAGGTACTAGCAGCCTTGGGTGAAACAATGAAGAAAGGAACCAGCTTT
GGTGCTCCTTGTCTTCTAGAGAATGTTCTTGCAGAAATGGTAATCTCAGC
TGTTCCAAGCAGAGAAATGCGTTGTTTTGTTAACTCAGGCACACAAGCAT
GC
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