FC920257

Overview
NameFC920257
Unique NameFC920257
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length502
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10304 contig Ccv1_Contig10304:67..568. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA2_BACAA (Glutamate-1-semialdehyde 2,1-aminomutase 2 OS=Bacillus anthracis (strain A0248) GN=hemL2 PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 4.817e-31
Identity = 68/112 (60.71%), Postives = 84/112 (75.00%), Query Frame = 2
Query:  164 AFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            AF  A++LMPGGVNSPVRAFKSVG  P+  +  KGS ++DIDGNEYIDYV SWGP I G  +D+V+ AL    ++GTSFGAP  +EN LA++VI  VPS E+   VNSGT+A
Sbjct:   10 AFEEAQDLMPGGVNSPVRAFKSVGMNPLFMERGKGSKVYDIDGNEYIDYVLSWGPLIHGHANDRVVEALKAVAERGTSFGAPTEIENKLAKLVIERVPSIEIVRMVNSGTEA 121          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA2_GEOKA (Glutamate-1-semialdehyde 2,1-aminomutase 2 OS=Geobacillus kaustophilus GN=hemL2 PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 6.291e-31
Identity = 69/117 (58.97%), Postives = 86/117 (73.50%), Query Frame = 2
Query:  149 KNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            + S+ A+  A +LMPGGVNSPVRAFKSVG  PI     +G+ ++DIDGNEYIDYV SWGP I+G  + QV+ AL    ++GTSFGAP LLEN LA++VI  VPS E+   VNSGT+A
Sbjct:    5 ERSKTAYEEAVKLMPGGVNSPVRAFKSVGMTPIFMARGQGAKIYDIDGNEYIDYVLSWGPLILGHANPQVVEALKRVAEQGTSFGAPTLLENELAKLVIERVPSVEIVRMVNSGTEA 121          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA2_STAHJ (Glutamate-1-semialdehyde 2,1-aminomutase 2 OS=Staphylococcus haemolyticus (strain JCSC1435) GN=hemL2 PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 8.217e-31
Identity = 69/117 (58.97%), Postives = 83/117 (70.94%), Query Frame = 2
Query:  149 KNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            + S EA  +A+ LMPGGVNSPVRAFKSV    I  D  KGS ++DIDGNEYIDYV SWGP I+G  ++QV+  L E + +GTSFGA  L EN LAE+VI  VPS E    V+SGT+A
Sbjct:    4 EKSIEAMKIAENLMPGGVNSPVRAFKSVDTPAIFMDHAKGSRIYDIDGNEYIDYVLSWGPLILGHKNEQVIKKLHEAVNRGTSFGASTLEENKLAELVIERVPSIEKVRMVSSGTEA 120          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA2_BACC1 (Glutamate-1-semialdehyde 2,1-aminomutase 2 OS=Bacillus cereus (strain ATCC 10987) GN=hemL2 PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 8.217e-31
Identity = 68/112 (60.71%), Postives = 84/112 (75.00%), Query Frame = 2
Query:  164 AFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            AF  A++LMPGGVNSPVRAFKSVG  P+  +  KGS ++DIDGNEYIDYV SWGP I G  +++V+ AL    +KGTSFGAP  +EN LA++VI  VPS E+   VNSGT+A
Sbjct:   10 AFEEAQDLMPGGVNSPVRAFKSVGMNPLFMERGKGSKVYDIDGNEYIDYVLSWGPLIHGHANNRVVEALKAVAEKGTSFGAPTEIENKLAKLVIERVPSIEIVRMVNSGTEA 121          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_CHLT3 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=hemL PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.073e-30
Identity = 69/121 (57.02%), Postives = 84/121 (69.42%), Query Frame = 2
Query:  140 ITLKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMK-KGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            + LK S   F  AK+++PGGVNSPVRAF SVGG P+     +G+ M D+DGN YIDYVGSWGP I+G    +V+ A+  TMK  GTSFGAP  LE  LAE++I  VPS EM   VNSGT+A
Sbjct:    2 LNLKTSAALFERAKKVIPGGVNSPVRAFNSVGGTPVFVTKGEGARMIDVDGNSYIDYVGSWGPFILGHSHPRVIEAIERTMKAHGTSFGAPTELEIELAELIIKVVPSVEMVRMVNSGTEA 122          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_GEOUR (Glutamate-1-semialdehyde 2,1-aminomutase OS=Geobacter uraniireducens (strain Rf4) GN=hemL PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.402e-30
Identity = 67/115 (58.26%), Postives = 82/115 (71.30%), Query Frame = 2
Query:  155 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            SE  F  A++ +PGGVNSPVRAFKSVG  P+  +   GS ++D+DGNE+IDYVGSWGP I+G    QV+AA+   +  G SFGAP  LE  LAEMVI AVPS EM   V+SGT+A
Sbjct:    6 SELLFQEAQKAIPGGVNSPVRAFKSVGTDPLFIEKASGSRIYDVDGNEFIDYVGSWGPMILGHCHPQVVAAVKSAVDNGCSFGAPTELEITLAEMVIEAVPSIEMVRMVSSGTEA 120          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA2_STAS1 (Glutamate-1-semialdehyde 2,1-aminomutase 2 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=hemL2 PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.402e-30
Identity = 70/116 (60.34%), Postives = 83/116 (71.55%), Query Frame = 2
Query:  152 NSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            NSE+A   A+ELMPGGVNSPVRAFKSV    I  D  +GS ++DIDGNEYIDYV SWGP I+G  + QV+  + E + KGTSFGA  L EN LAE+VI  VPS E    V+SGT+A
Sbjct:    5 NSEKAMAKAEELMPGGVNSPVRAFKSVDTPAIFMDHGEGSRIYDIDGNEYIDYVLSWGPLILGHKNKQVIEKIHEAVDKGTSFGASTLQENKLAELVIERVPSIEKVRMVSSGTEA 120          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_PERMH (Glutamate-1-semialdehyde 2,1-aminomutase OS=Persephonella marina (strain DSM 14350 / EX-H1) GN=hemL PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.831e-30
Identity = 65/118 (55.08%), Postives = 83/118 (70.34%), Query Frame = 2
Query:  146 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            ++ S   F  A+  + GGVNSPVRAFKSVG +P+     KGS +WD+DGNEYIDYV SWGP I+G  +DQ++ A+ +    GTSFGAP  LE  +A+ V+ AVPS EM  FVNSGT+A
Sbjct:    3 MERSLNLFEEAQRYLVGGVNSPVRAFKSVGMEPLFIQKGKGSRVWDVDGNEYIDYVLSWGPLILGHANDQIVNAIKQVANYGTSFGAPTELEIEMAKAVVDAVPSIEMVRFVNSGTEA 120          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_DESRM (Glutamate-1-semialdehyde 2,1-aminomutase OS=Desulfotomaculum reducens (strain MI-1) GN=hemL PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.831e-30
Identity = 65/117 (55.56%), Postives = 82/117 (70.09%), Query Frame = 2
Query:  149 KNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            + SEE F  A+ ++PGGVNSPVRAFKSVG  P       GS MWD+DGNEYIDY+ SWGP I+G     V+ AL + ++KGT++GAP  LE  LA+M+  A+PS EM   VNSGT+A
Sbjct:    6 QKSEEMFEQAQRIIPGGVNSPVRAFKSVGMNPPFIARANGSRMWDVDGNEYIDYICSWGPQILGHRHPAVIHALQDCLEKGTTYGAPTDLEVTLAQMLTEALPSVEMVRMVNSGTEA 122          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA2_EXISA (Glutamate-1-semialdehyde 2,1-aminomutase 2 OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=hemL2 PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 3.122e-30
Identity = 68/115 (59.13%), Postives = 82/115 (71.30%), Query Frame = 2
Query:  155 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            S+EAF  A+ LMPGGVNSPVRA+KSVG  PI  +  +GS ++DIDGNEYIDYV SWGP I+G  D  V  A+ E  +KG +FG P  LE  +AE+VI  VPS EM   VNSGT+A
Sbjct:    8 SQEAFEQARPLMPGGVNSPVRAYKSVGMTPIFAERGEGSRVYDIDGNEYIDYVLSWGPLILGHRDPVVTKAIQEQAEKGWTFGTPTELETKMAELVIDRVPSIEMVRMVNSGTEA 122          
The following BLAST results are available for this feature:
BLAST of FC920257 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GSA2_BACAA4.817e-3160.71Glutamate-1-semialdehyde 2,1-aminomutase 2 OS=Baci... [more]
GSA2_GEOKA6.291e-3158.97Glutamate-1-semialdehyde 2,1-aminomutase 2 OS=Geob... [more]
GSA2_STAHJ8.217e-3158.97Glutamate-1-semialdehyde 2,1-aminomutase 2 OS=Stap... [more]
GSA2_BACC18.217e-3160.71Glutamate-1-semialdehyde 2,1-aminomutase 2 OS=Baci... [more]
GSA_CHLT31.073e-3057.02Glutamate-1-semialdehyde 2,1-aminomutase OS=Chloro... [more]
GSA_GEOUR1.402e-3058.26Glutamate-1-semialdehyde 2,1-aminomutase OS=Geobac... [more]
GSA2_STAS11.402e-3060.34Glutamate-1-semialdehyde 2,1-aminomutase 2 OS=Stap... [more]
GSA_PERMH1.831e-3055.08Glutamate-1-semialdehyde 2,1-aminomutase OS=Persep... [more]
GSA_DESRM1.831e-3055.56Glutamate-1-semialdehyde 2,1-aminomutase OS=Desulf... [more]
GSA2_EXISA3.122e-3059.13Glutamate-1-semialdehyde 2,1-aminomutase 2 OS=Exig... [more]

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Properties
Property NameValue
Genbank descriptionC32006A03EF RVDevelop1 Citrus clementina cDNA clone C32006A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920257 ID=FC920257; Name=FC920257; organism=Citrus clementina; type=EST; length=502bp
GGCAGCTACAATTACAGGGGTAGGAGTTGGGTTAGGGTTTTCATGTTCAT
CAAAGCTCACCAAGAGAATTTCTTCTTCTACTGGATCCTCTCGCTGTAGT
GTTAAAATGTCGGTCTCTGTTGAGGAGCAGAAGAAAAATATCACTTTAAA
AAACTCTGAAGAAGCTTTCAATGTCGCCAAGGAATTGATGCCTGGAGGTG
TAAATTCACCTGTACGTGCCTTCAAATCTGTTGGTGGTCAACCTATTGAG
TTTGATTCCGTCAAGGGCTCACACATGTGGGATATCGATGGCAACGAGTA
CATTGACTATGTAGGTTCTTGGGGGCCGGCAATTATTGGTCAGCCAGATG
ATCAGGTACTAGCAGCCTTGGGTGAAACAATGAAGAAAGGAACCAGCTTT
GGTGCTCCTTGTCTTCTAGAGAATGTTCTTGCAGAAATGGTAATCTCAGC
TGTTCCAAGCAGAGAAATGCGTTGTTTTGTTAACTCAGGCACACAAGCAT
GC
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