FC920257

Overview
NameFC920257
Unique NameFC920257
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length502
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10304 contig Ccv1_Contig10304:67..568. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_HELMI (Glutamate-1-semialdehyde 2,1-aminomutase OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=hemL PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 4.078e-30
Identity = 60/115 (52.17%), Postives = 85/115 (73.91%), Query Frame = 2
Query:  155 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            SE+ F  AK L+PGGVNSPVRAFKSVG  P+  +  +G++++D+DGN+Y+DYVGSWGP I+G    +V  AL   + +GTS+GAP  LE+ LA++++ A P+ +M   VNSGT+A
Sbjct:    8 SEQLFAEAKTLIPGGVNSPVRAFKSVGRNPVFIERAEGAYLYDVDGNKYVDYVGSWGPMIVGHAHPEVSEALKAAIDRGTSYGAPTELESRLAKLILEAFPAMDMVRMVNSGTEA 122          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_BACSU (Glutamate-1-semialdehyde 2,1-aminomutase OS=Bacillus subtilis GN=hemL PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 4.078e-30
Identity = 67/117 (57.26%), Postives = 87/117 (74.36%), Query Frame = 2
Query:  149 KNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            + S+ AF  A++LMPGGVNSPVRAFKSV   PI  +  KGS ++DIDGNEYIDYV SWGP I+G  +D+V+ +L +  + GTSFGAP  +EN LA++VI  VPS E+   V+SGT+A
Sbjct:    5 EKSKTAFKEAQKLMPGGVNSPVRAFKSVDMDPIFMERGKGSKIFDIDGNEYIDYVLSWGPLILGHTNDRVVESLKKVAEYGTSFGAPTEVENELAKLVIDRVPSVEIVRMVSSGTEA 121          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_ALCBS (Glutamate-1-semialdehyde 2,1-aminomutase OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=hemL PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 4.078e-30
Identity = 63/117 (53.85%), Postives = 84/117 (71.79%), Query Frame = 2
Query:  149 KNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            K+SE+ F  A++ +PGGVNSPVRAFKSVGG P+ F S +G+H++D D N+YIDYVGSWGP I+G     V+AA+   +++G SFGAP   E  +A+ V   VPS +M   VNSGT+A
Sbjct:    4 KHSEQLFRQAQKHIPGGVNSPVRAFKSVGGTPVFFHSARGAHLFDEDDNKYIDYVGSWGPMILGHNHPHVVAAVQAAVEQGLSFGAPTATEVAMADKVCELVPSMDMVRMVNSGTEA 120          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_LACRJ (Glutamate-1-semialdehyde 2,1-aminomutase OS=Lactobacillus reuteri (strain JCM 1112) GN=hemL PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 5.326e-30
Identity = 65/115 (56.52%), Postives = 84/115 (73.04%), Query Frame = 2
Query:  155 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            S+ AF  A++ MPGGVNSPVRAFK+VGG P+  D  K  +++DIDGN+YIDYV SWGP I+G  DD V+A L + + KGTS+GAP L E  LA++V   +PS EM   V+SGT+A
Sbjct:    9 SKIAFKEAQKYMPGGVNSPVRAFKNVGGDPLFIDHGKDEYIYDIDGNKYIDYVLSWGPLILGHADDHVVAELDKAVAKGTSYGAPTLQETELAKIVNKIMPSIEMIRMVSSGTEA 123          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_LACRD (Glutamate-1-semialdehyde 2,1-aminomutase OS=Lactobacillus reuteri (strain DSM 20016) GN=hemL PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 5.326e-30
Identity = 65/115 (56.52%), Postives = 84/115 (73.04%), Query Frame = 2
Query:  155 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            S+ AF  A++ MPGGVNSPVRAFK+VGG P+  D  K  +++DIDGN+YIDYV SWGP I+G  DD V+A L + + KGTS+GAP L E  LA++V   +PS EM   V+SGT+A
Sbjct:    9 SKIAFKEAQKYMPGGVNSPVRAFKNVGGDPLFIDHGKDEYIYDIDGNKYIDYVLSWGPLILGHADDHVVAELDKAVAKGTSYGAPTLQETELAKIVNKIMPSIEMIRMVSSGTEA 123          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_CHLAD (Glutamate-1-semialdehyde 2,1-aminomutase OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=hemL PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 5.326e-30
Identity = 62/115 (53.91%), Postives = 81/115 (70.43%), Query Frame = 2
Query:  155 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            S+  F  A+ ++PGGVNSPVRAF+ VGG PI F+  +G+H+WD+DGN YIDYV SWGP ++G     V+ A+    ++GTSFGAP  LE  LA +V+  VPS E   FVNSGT+A
Sbjct:   11 SQANFAAAQAVIPGGVNSPVRAFRGVGGSPIFFERGQGAHIWDVDGNRYIDYVLSWGPLLLGHAHPAVVNAIATQAQRGTSFGAPTELETDLARLVLDLVPSIEQIRFVNSGTEA 125          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA2_BACP2 (Glutamate-1-semialdehyde 2,1-aminomutase 2 OS=Bacillus pumilus (strain SAFR-032) GN=hemL2 PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 5.326e-30
Identity = 65/117 (55.56%), Postives = 86/117 (73.50%), Query Frame = 2
Query:  149 KNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            + S++AF  A+ LMPGGVNSPVRAFKSV   PI  +  KG+ ++DIDGNEYIDYV SWGP I+G  +D+V+ ++    +KGTSFGA  L+EN LA++V   VPS E+   V+SGT+A
Sbjct:    6 EKSKQAFEEAQHLMPGGVNSPVRAFKSVNTDPIFMERGKGAKIYDIDGNEYIDYVLSWGPLILGHTNDRVVESIQRVAEKGTSFGASTLVENELAKLVSERVPSIEVIRMVSSGTEA 122          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_SULAA (Glutamate-1-semialdehyde 2,1-aminomutase OS=Sulfurihydrogenibium azorense (strain Az-Fu1 / DSM 15241 / OCM 825) GN=hemL PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 6.956e-30
Identity = 66/120 (55.00%), Postives = 82/120 (68.33%), Query Frame = 2
Query:  140 ITLKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            + +  S+E F  A+  + GGVNSPVRAFK+VG  PI     KGS +WD+DGNEYIDYV SWGP I+G   DQV+ A+ +    GTSFGAP  LE  +A+ V+ AV S EM  FVNSGT+A
Sbjct:    1 MNILKSKELFKEAQNYLVGGVNSPVRAFKAVGTDPIFIQRGKGSRIWDVDGNEYIDYVLSWGPLILGHAHDQVVNAIKQVANYGTSFGAPTELEIEMAKAVVDAVKSVEMVRFVNSGTEA 120          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_SYNAS (Glutamate-1-semialdehyde 2,1-aminomutase OS=Syntrophus aciditrophicus (strain SB) GN=hemL PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.187e-29
Identity = 64/120 (53.33%), Postives = 84/120 (70.00%), Query Frame = 2
Query:  140 ITLKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            +T   SE+ F  A+ L+PGGVNSPVRAF++VGG P   D  +GS ++DIDG EYIDYVGSWGP I+G    QV+ A+ + +++GTS+GAP   E  LA  +I A PS EM   V+SGT+A
Sbjct:    1 MTKSLSEQLFETAEGLLPGGVNSPVRAFRAVGGVPRFIDRAEGSRIYDIDGREYIDYVGSWGPMILGHSHPQVVEAIRKAVERGTSYGAPTPGEIALARTIIEAFPSMEMIRMVSSGTEA 120          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_HERA2 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) GN=hemL PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.550e-29
Identity = 66/115 (57.39%), Postives = 84/115 (73.04%), Query Frame = 2
Query:  155 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            S  AF  A+ L+PGGVNSPVRAF+ VGG P   D   G++++DIDGN+YIDYV SWGP I+G     V+ A+    ++GTSFGAP  LE+ LAE+VI+AVPS EM  FV+SGT+A
Sbjct:    6 SSAAFERAQALLPGGVNSPVRAFRGVGGVPRFIDHGAGAYLYDIDGNQYIDYVLSWGPLILGHAYPAVVEAICAQAQRGTSFGAPTELESELAELVIAAVPSVEMVRFVSSGTEA 120          
The following BLAST results are available for this feature:
BLAST of FC920257 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GSA_HELMI4.078e-3052.17Glutamate-1-semialdehyde 2,1-aminomutase OS=Heliob... [more]
GSA_BACSU4.078e-3057.26Glutamate-1-semialdehyde 2,1-aminomutase OS=Bacill... [more]
GSA_ALCBS4.078e-3053.85Glutamate-1-semialdehyde 2,1-aminomutase OS=Alcani... [more]
GSA_LACRJ5.326e-3056.52Glutamate-1-semialdehyde 2,1-aminomutase OS=Lactob... [more]
GSA_LACRD5.326e-3056.52Glutamate-1-semialdehyde 2,1-aminomutase OS=Lactob... [more]
GSA_CHLAD5.326e-3053.91Glutamate-1-semialdehyde 2,1-aminomutase OS=Chloro... [more]
GSA2_BACP25.326e-3055.56Glutamate-1-semialdehyde 2,1-aminomutase 2 OS=Baci... [more]
GSA_SULAA6.956e-3055.00Glutamate-1-semialdehyde 2,1-aminomutase OS=Sulfur... [more]
GSA_SYNAS1.187e-2953.33Glutamate-1-semialdehyde 2,1-aminomutase OS=Syntro... [more]
GSA_HERA21.550e-2957.39Glutamate-1-semialdehyde 2,1-aminomutase OS=Herpet... [more]

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Properties
Property NameValue
Genbank descriptionC32006A03EF RVDevelop1 Citrus clementina cDNA clone C32006A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920257 ID=FC920257; Name=FC920257; organism=Citrus clementina; type=EST; length=502bp
GGCAGCTACAATTACAGGGGTAGGAGTTGGGTTAGGGTTTTCATGTTCAT
CAAAGCTCACCAAGAGAATTTCTTCTTCTACTGGATCCTCTCGCTGTAGT
GTTAAAATGTCGGTCTCTGTTGAGGAGCAGAAGAAAAATATCACTTTAAA
AAACTCTGAAGAAGCTTTCAATGTCGCCAAGGAATTGATGCCTGGAGGTG
TAAATTCACCTGTACGTGCCTTCAAATCTGTTGGTGGTCAACCTATTGAG
TTTGATTCCGTCAAGGGCTCACACATGTGGGATATCGATGGCAACGAGTA
CATTGACTATGTAGGTTCTTGGGGGCCGGCAATTATTGGTCAGCCAGATG
ATCAGGTACTAGCAGCCTTGGGTGAAACAATGAAGAAAGGAACCAGCTTT
GGTGCTCCTTGTCTTCTAGAGAATGTTCTTGCAGAAATGGTAATCTCAGC
TGTTCCAAGCAGAGAAATGCGTTGTTTTGTTAACTCAGGCACACAAGCAT
GC
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