FC920258

Overview
NameFC920258
Unique NameFC920258
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length746
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14169 contig Ccv1_Contig14169:2..745. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920258 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.685e-15
Identity = 55/148 (37.16%), Postives = 71/148 (47.97%), Query Frame = 2
Query:  257 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVR 697
            PSYL G  PGD+G+D+ GL   P    + +E E+IH RWAML   G + PE L       G   W KA       GG   YLG P  +   ++  I A + + + FVE  R                 AFDPLG + DP +F ELKV+
Sbjct:   56 PSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEAL-------GLGNWVKAQEWAAIPGGQATYLGQP--VPWGTLPTILAIEFLAIAFVEHQR---SMEKDSEKKKYPGGAFDPLGYSKDPAKFEELKVK 191          
BLAST of FC920258 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.813e-15
Identity = 55/181 (30.39%), Postives = 86/181 (47.51%), Query Frame = 2
Query:   65 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSTPQS-------IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 586
            A+S I   AF+  ++ R  +          GGR        +TP +       +   PDRP +        P +L G  PGD+G+D  GL++DPE+   N++ E++H RWAMLGA G   PE+L+K G+      W+ AG Q       +Y  +           ++  ++VL+G+ EG R
Sbjct:    6 ASSTIAAVAFSSPSSRRNGSIVGTTKASFLGGRRLRVSKYSTTPTARSATTVCVAADPDRPLWFP--GSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGI-LNTPSWYTAGEQ-------EYFTDTT--------TLFIVELVLIGWAEGRR 168          
BLAST of FC920258 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.285e-15
Identity = 46/124 (37.10%), Postives = 65/124 (52.42%), Query Frame = 2
Query:  215 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 586
            PDRP +        P +L G  PGD+G+D  GL +DPE+   N + E++HSRWAMLGA G   PE L+K GV      W+ AG Q       +Y  +           ++  ++VL+G+ EG R
Sbjct:   63 PDRPLWFP--GSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGV-LNTPSWYTAGEQ-------EYFTDTT--------TLFVIELVLIGWAEGRR 168          
BLAST of FC920258 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.072e-14
Identity = 62/193 (32.12%), Postives = 90/193 (46.63%), Query Frame = 2
Query:  158 GRITMRRTVKSTPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGA-QIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVRSSRMASGYVLML 733
            GR+TM         + W+ P +P+         P++L G  PGD+G+D  GL+  PE F + +E E+ H RWAML   G + PE L       G   W KA       +G   YLGNP  +   ++  I A + + + F E  R                 AFDPLG + DP +F ELK++   + +G + ML
Sbjct:   40 GRVTM--------SAEWF-PGQPR---------PAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL-------GLGNWVKAQEWAALPDGQATYLGNP--VPWGNLPTILAIEFLAIAFAEQQR---TMEKDPEKKKYPGGAFDPLGFSKDPAKFEELKLK--EIKNGRLAML 200          
BLAST of FC920258 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.388e-14
Identity = 39/63 (61.90%), Postives = 45/63 (71.43%), Query Frame = 2
Query:  509 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVR 697
            +L+HAQSILAIWACQVVLMG VEGYRI                +FDPLGLA+DP+ FAELKV+
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVK 214          
BLAST of FC920258 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.388e-14
Identity = 39/63 (61.90%), Postives = 45/63 (71.43%), Query Frame = 2
Query:  509 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVR 697
            +L+HAQSILAIWACQVVLMG VEGYRI                +FDPLGLA+DP+ FAELKV+
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVK 214          
BLAST of FC920258 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.388e-14
Identity = 39/63 (61.90%), Postives = 45/63 (71.43%), Query Frame = 2
Query:  509 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVR 697
            +L+HAQSILAIWACQVVLMG VEGYRI                +FDPLGLA+DP+ FAELKV+
Sbjct:    1 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVK 63          
BLAST of FC920258 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.388e-14
Identity = 39/63 (61.90%), Postives = 45/63 (71.43%), Query Frame = 2
Query:  509 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVR 697
            +L+HAQSILAIWACQVVLMG VEGYRI                +FDPLGLA+DP+ FAELKV+
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVK 212          
BLAST of FC920258 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.388e-14
Identity = 39/63 (61.90%), Postives = 45/63 (71.43%), Query Frame = 2
Query:  509 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVR 697
            +L+HAQSILAIWACQVVLMG VEGYRI                +FDPLGLA+DP+ FAELKV+
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVK 212          
BLAST of FC920258 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.949e-14
Identity = 40/71 (56.34%), Postives = 47/71 (66.20%), Query Frame = 2
Query:  488 LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRI-XXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVR 697
            LDYLGNP+L+HAQSILAIWA QV+LMG VEGYR+                 +FDPL    DP+ FAELKV+
Sbjct:    1 LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLASLTDPEAFAELKVK 71          
The following BLAST results are available for this feature:
BLAST of FC920258 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
CB11_SOLLC3.685e-1537.16Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB12_SOLLC4.813e-1530.39Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB12_PETHY6.285e-1537.10Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB121_HORVU1.072e-1432.12Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB2F_SOLLC2.388e-1461.90Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC2.388e-1461.90Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB2D_SOLLC2.388e-1461.90Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB2C_SOLLC2.388e-1461.90Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2A_SOLLC2.388e-1461.90Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB21_RAPSA6.949e-1456.34Chlorophyll a-b binding of LHCII type 1 protein (F... [more]

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Properties
Property NameValue
Genbank descriptionC32006A04EF RVDevelop1 Citrus clementina cDNA clone C32006A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920258 ID=FC920258; Name=FC920258; organism=Citrus clementina; type=EST; length=746bp
GATATTCAGAGTGCGAAAAGAAGCTTCAGCAACACACGGAAAAGCTTTCG
CATAAGAACATATGGCAACCTCTGCTATCCAACAATCAGCATTTGCTGGC
CAGACCGCCTTGAGGCAATCCAATGAGTTTGTCCGCAAGGTTGGAGTTGC
TGACGGTGGCCGTATCACCATGAGGAGGACTGTCAAATCCACTCCCCAGA
GCATCTGGTACGGCCCAGACCGCCCAAAGTACTTGGGACCATTCTCTGAG
CAAACACCATCATACTTGACTGGTGAGTTCCCTGGTGACTATGGCTGGGA
TACCGCTGGTTTATCAGCAGACCCCGAGACATTTGCTAAGAACCGTGAGC
TAGAGGTGATCCACAGCAGATGGGCAATGCTTGGAGCTCTTGGCTGCGTC
TTCCCTGAAATCCTCTCCAAGAATGGAGTGAAGTTCGGCGAAGCAGTTTG
GTTCAAGGCTGGCGCTCAAATCTTCTCTGAAGGTGGCCTTGACTATCTTG
GCAACCCCAACCTCATTCATGCTCAGAGCATTTTGGCTATCTGGGCCTGC
CAGGTTGTGCTCATGGGTTTTGTTGAAGGATACAGAATTGGTGGCGGTCC
TCTTGGTGAAGGACTTGACCCACTTTACCCTGGTGGTGCTTTTGACCCAC
TTGGTTTGGCTGATGACCCCGATCAATTTGCTGAGTTGAAAGTCAGGAGC
TCAAGAATGGCGTCTGGCTATGTTCTCATGTTGGGATCTTGTTCAG
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