FC920258
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC920258 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 3.685e-15 Identity = 55/148 (37.16%), Postives = 71/148 (47.97%), Query Frame = 2 Query: 257 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVR 697 PSYL G PGD+G+D+ GL P + +E E+IH RWAML G + PE L G W KA GG YLG P + ++ I A + + + FVE R AFDPLG + DP +F ELKV+ Sbjct: 56 PSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEAL-------GLGNWVKAQEWAAIPGGQATYLGQP--VPWGTLPTILAIEFLAIAFVEHQR---SMEKDSEKKKYPGGAFDPLGYSKDPAKFEELKVK 191
BLAST of FC920258 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 4.813e-15 Identity = 55/181 (30.39%), Postives = 86/181 (47.51%), Query Frame = 2 Query: 65 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSTPQS-------IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 586 A+S I AF+ ++ R + GGR +TP + + PDRP + P +L G PGD+G+D GL++DPE+ N++ E++H RWAMLGA G PE+L+K G+ W+ AG Q +Y + ++ ++VL+G+ EG R Sbjct: 6 ASSTIAAVAFSSPSSRRNGSIVGTTKASFLGGRRLRVSKYSTTPTARSATTVCVAADPDRPLWFP--GSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGI-LNTPSWYTAGEQ-------EYFTDTT--------TLFIVELVLIGWAEGRR 168
BLAST of FC920258 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 6.285e-15 Identity = 46/124 (37.10%), Postives = 65/124 (52.42%), Query Frame = 2 Query: 215 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 586 PDRP + P +L G PGD+G+D GL +DPE+ N + E++HSRWAMLGA G PE L+K GV W+ AG Q +Y + ++ ++VL+G+ EG R Sbjct: 63 PDRPLWFP--GSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGV-LNTPSWYTAGEQ-------EYFTDTT--------TLFVIELVLIGWAEGRR 168
BLAST of FC920258 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 1.072e-14 Identity = 62/193 (32.12%), Postives = 90/193 (46.63%), Query Frame = 2 Query: 158 GRITMRRTVKSTPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGA-QIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVRSSRMASGYVLML 733 GR+TM + W+ P +P+ P++L G PGD+G+D GL+ PE F + +E E+ H RWAML G + PE L G W KA +G YLGNP + ++ I A + + + F E R AFDPLG + DP +F ELK++ + +G + ML Sbjct: 40 GRVTM--------SAEWF-PGQPR---------PAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL-------GLGNWVKAQEWAALPDGQATYLGNP--VPWGNLPTILAIEFLAIAFAEQQR---TMEKDPEKKKYPGGAFDPLGFSKDPAKFEELKLK--EIKNGRLAML 200
BLAST of FC920258 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 2.388e-14 Identity = 39/63 (61.90%), Postives = 45/63 (71.43%), Query Frame = 2 Query: 509 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVR 697 +L+HAQSILAIWACQVVLMG VEGYRI +FDPLGLA+DP+ FAELKV+ Sbjct: 152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVK 214
BLAST of FC920258 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 2.388e-14 Identity = 39/63 (61.90%), Postives = 45/63 (71.43%), Query Frame = 2 Query: 509 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVR 697 +L+HAQSILAIWACQVVLMG VEGYRI +FDPLGLA+DP+ FAELKV+ Sbjct: 152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVK 214
BLAST of FC920258 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 2.388e-14 Identity = 39/63 (61.90%), Postives = 45/63 (71.43%), Query Frame = 2 Query: 509 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVR 697 +L+HAQSILAIWACQVVLMG VEGYRI +FDPLGLA+DP+ FAELKV+ Sbjct: 1 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVK 63
BLAST of FC920258 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 2.388e-14 Identity = 39/63 (61.90%), Postives = 45/63 (71.43%), Query Frame = 2 Query: 509 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVR 697 +L+HAQSILAIWACQVVLMG VEGYRI +FDPLGLA+DP+ FAELKV+ Sbjct: 150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVK 212
BLAST of FC920258 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 2.388e-14 Identity = 39/63 (61.90%), Postives = 45/63 (71.43%), Query Frame = 2 Query: 509 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVR 697 +L+HAQSILAIWACQVVLMG VEGYRI +FDPLGLA+DP+ FAELKV+ Sbjct: 150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVK 212
BLAST of FC920258 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 6.949e-14 Identity = 40/71 (56.34%), Postives = 47/71 (66.20%), Query Frame = 2 Query: 488 LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRI-XXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVR 697 LDYLGNP+L+HAQSILAIWA QV+LMG VEGYR+ +FDPL DP+ FAELKV+ Sbjct: 1 LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLASLTDPEAFAELKVK 71 The following BLAST results are available for this feature:
BLAST of FC920258 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 72
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920258 ID=FC920258; Name=FC920258; organism=Citrus clementina; type=EST; length=746bpback to top |