FC920259

Overview
NameFC920259
Unique NameFC920259
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10260 contig Ccv1_Contig10260:6..726. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920259 vs. ExPASy Swiss-Prot
Match: THS2_ARAHY (Putative stilbene synthase 2 (Fragment) OS=Arachis hypogaea PE=5 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 2.795e-65
Identity = 119/147 (80.95%), Postives = 134/147 (91.16%), Query Frame = 2
Query:  281 LKENPNMCAYMAPSLDARQDIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFGDGAAAVI 721
            LKENPNMCAY APSLDAR+D+++ EVP++GKEAATKAIKEWGQP SKITHLIFCTTSGV +PG DY+L  L+GL PSVKR+MMY QGCFAGGTVLRLAKDLAENNK ARVL+VCSE TAVTFRGP++T +DSLVGQALF DGAAA+I
Sbjct:    1 LKENPNMCAYKAPSLDAREDMMIREVPRVGKEAATKAIKEWGQPMSKITHLIFCTTSGVALPGVDYELIVLLGLDPSVKRYMMYHQGCFAGGTVLRLAKDLAENNKDARVLIVCSENTAVTFRGPSETDMDSLVGQALFADGAAAII 147          
BLAST of FC920259 vs. ExPASy Swiss-Prot
Match: CHS6_MEDSA (Chalcone synthase 6-4 (Fragment) OS=Medicago sativa GN=CHS6-4 PE=2 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 4.618e-60
Identity = 112/119 (94.12%), Postives = 117/119 (98.32%), Query Frame = 2
Query:  365 LGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFGDGAAAVI 721
            LGKEAA KAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKL+GLRP VKR+MMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSE+TAVTFRGP+DTHLDSLVGQALFGDGAAA+I
Sbjct:    1 LGKEAAVKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALI 119          
BLAST of FC920259 vs. ExPASy Swiss-Prot
Match: CHS7_MEDSA (Chalcone synthase (Fragment) OS=Medicago sativa GN=CHSII PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.906e-46
Identity = 92/100 (92.00%), Postives = 97/100 (97.00%), Query Frame = 2
Query:  422 ITHLIFCTTSGVDMPGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFGDGAAAVI 721
            ITHLI CTTS VDMPGADYQLTKL+GLRP VKR+MMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSE+TAVTFRGP+DTHLDSLVGQALFGDGAAA+I
Sbjct:    1 ITHLIVCTTS-VDMPGADYQLTKLLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALI 99          
BLAST of FC920259 vs. ExPASy Swiss-Prot
Match: CHSY_MALDO (Chalcone synthase (Fragment) OS=Malus domestica GN=CHS PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.920e-30
Identity = 65/66 (98.48%), Postives = 66/66 (100.00%), Query Frame = 2
Query:  524 MMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFGDGAAAVI 721
            MMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGP+DTHLDSLVGQALFGDGAAAVI
Sbjct:    1 MMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPSDTHLDSLVGQALFGDGAAAVI 66          
BLAST of FC920259 vs. ExPASy Swiss-Prot
Match: PKS1_DICDI (Probable polyketide synthase 1 OS=Dictyostelium discoideum GN=stlA PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.006e-22
Identity = 69/237 (29.11%), Postives = 122/237 (51.48%), Query Frame = 2
Query:   11 KHEPQTYSLRVQLEMATVQEIRNAQRADGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFGDGAAAVI 721
            +H+ Q   ++V ++       R + +++  + VL IG + P   ++Q    D        +   E  EK KR+ ++S IK R++ + +    EN     ++    D       V VP L ++A  +A+K+WG  K  ITH++  T++G+ +P  +++L  L+GL   V+R  +   GC AG + LR A  LA+ +   R+LVVC+E+ ++ F        D +V  ++F DG+AA I
Sbjct: 2758 QHQKQQQKVQV-IQQQQQPLSRLSYKSNNNSFVLGIGISVPGEPISQQSLKDSISNDFSDK--AETNEKVKRIFEQSQIKTRHL-VRDYTKPENSIKFRHLETITDVNNQFKKV-VPDLAQQACLRALKDWGGDKGDITHIVSVTSTGIIIPDVNFKLIDLLGLNKDVERVSLNLMGCLAGLSSLRTAASLAKASPRNRILVVCTEVCSLHFSNTDGG--DQMVASSIFADGSAAYI 2987          
BLAST of FC920259 vs. ExPASy Swiss-Prot
Match: BCSA_BACSU (Putative chalcone synthase OS=Bacillus subtilis GN=bcsA PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.745e-12
Identity = 60/215 (27.91%), Postives = 102/215 (47.44%), Query Frame = 2
Query:  101 ATVLAIGTATPAHSVNQ---ADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIVVVEVPKLGKEAATKAIK--EWGQ---PKSKITHLIFCTTSGVDMPGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFGDGAAAVI 721
            A +L+IGT+ PA++VNQ   A++  Y F+ +  + +  L   FK       I  R      E  KE          S + +  I + E  K  + A  + +   E+ Q   P  K+  + F +++G+  P  + +L   +   P  KR  ++  GC  G + L  A +  +    A VLV+ +E+ ++TF+ P D    +L+G +LFGDG AA +
Sbjct:    2 AFILSIGTSLPAYNVNQEKAAEFARYMFQHSFKD-IDRLLSSFKN----GQIHSRQFVKPIEWYKEGH--------SFEEKNQIYIEETLKHSRAAVRECLSHPEFFQEAIPYEKVEAVFFVSSTGLSTPSIEARLMNELPFSPYTKRIPIWGLGCAGGASGLARAAEYCKAYPEAFVLVISAELCSLTFQ-PEDKTKSNLIGTSLFGDGIAAAL 202          
The following BLAST results are available for this feature:
BLAST of FC920259 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
THS2_ARAHY2.795e-6580.95Putative stilbene synthase 2 (Fragment) OS=Arachis... [more]
CHS6_MEDSA4.618e-6094.12Chalcone synthase 6-4 (Fragment) OS=Medicago sativ... [more]
CHS7_MEDSA2.906e-4692.00Chalcone synthase (Fragment) OS=Medicago sativa GN... [more]
CHSY_MALDO2.920e-3098.48Chalcone synthase (Fragment) OS=Malus domestica GN... [more]
PKS1_DICDI1.006e-2229.11Probable polyketide synthase 1 OS=Dictyostelium di... [more]
BCSA_BACSU2.745e-1227.91Putative chalcone synthase OS=Bacillus subtilis GN... [more]

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Properties
Property NameValue
Genbank descriptionC32006A05EF RVDevelop1 Citrus clementina cDNA clone C32006A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920259 ID=FC920259; Name=FC920259; organism=Citrus clementina; type=EST; length=721bp
GAAACTCACCAAGCACGAGCCACAAACATATTCATTAAGGGTTCAACTTG
AAATGGCAACCGTTCAAGAGATCAGAAACGCTCAGCGTGCCGACGGCCCG
GCCACCGTCCTCGCCATCGGTACGGCCACGCCTGCCCACAGTGTCAACCA
GGCTGATTATCCCGACTATTACTTCAGGATCACAAAGAGCGAGCATATGA
CGGAGCTTAAAGAGAAGTTCAAGCGCATGTGTGACAAGTCGATGATTAAG
AAGCGTTACATGTACTTAACGGAAGAGATTTTGAAGGAAAACCCCAACAT
GTGCGCTTACATGGCTCCATCACTCGACGCACGTCAAGACATTGTGGTGG
TCGAAGTGCCGAAGCTCGGGAAAGAAGCTGCTACAAAGGCCATCAAAGAA
TGGGGCCAGCCCAAGTCTAAGATCACCCACCTCATCTTCTGCACCACCTC
CGGCGTCGACATGCCCGGCGCCGACTACCAGCTCACCAAACTGATCGGCC
TGCGCCCCTCCGTCAAGCGCTTCATGATGTACCAACAAGGATGTTTCGCC
GGCGGCACTGTTCTTCGCCTCGCTAAAGACTTGGCTGAGAACAACAAGGG
CGCTCGCGTTCTTGTTGTCTGTTCGGAGATCACGGCAGTCACTTTCCGCG
GCCCTGCCGATACTCATCTTGATTCTCTTGTGGGCCAGGCTTTGTTCGGT
GATGGTGCTGCTGCTGTGATC
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