FC920262

Overview
NameFC920262
Unique NameFC920262
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length654
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920262 vs. ExPASy Swiss-Prot
Match: SAR1B_DICDI (GTP-binding protein Sar1B OS=Dictyostelium discoideum GN=sarB PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.195e-22
Identity = 55/136 (40.44%), Postives = 89/136 (65.44%), Query Frame = 3
Query:  219 FFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCR-AVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLK 623
            FFK+E ++ +IGL NAGKT+L++++ TG      IPT+  N    T GNV  K +DLGGQ   R +W++Y   + + IV++VD++D +++  S+SE+HD+L    LS  PLL+LG+K D  G  +++ L D + ++
Sbjct:   16 FFKKEAKIVIIGLGNAGKTTLLHLLVTGSLKSH-IPTLRPNAESFTYGNVNFKAYDLGGQQNLRFLWKQYVPDSKTIIVFMVDSSDYNSIIESKSEIHDILGDEHLSQSPLLILGSKCDAKGHHNRENLIDLLDIR 150          
BLAST of FC920262 vs. ExPASy Swiss-Prot
Match: ARF3_DROME (ADP-ribosylation factor 3 OS=Drosophila melanogaster GN=Arf51F PE=2 SV=3)

HSP 1 Score: 104.76 bits (260), Expect = 4.195e-22
Identity = 51/140 (36.43%), Postives = 80/140 (57.14%), Query Frame = 3
Query:  219 FFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITGR 638
            F  +EM + ++GL  AGKT+++  +  G  S   IPTVGFN+  VT  NV   +WD+GGQ + R +W  Y      +++VVD AD D +  +R+ELH ++N   +    +L+  NK D P A+    + +++GL  I  R
Sbjct:    9 FGNKEMRILMLGLDAAGKTTILYKLKLG-QSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARTELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDR 147          
BLAST of FC920262 vs. ExPASy Swiss-Prot
Match: ARL1_DROME (ADP-ribosylation factor-like protein 1 OS=Drosophila melanogaster GN=Arf72A PE=1 SV=5)

HSP 1 Score: 104.375 bits (259), Expect = 5.478e-22
Identity = 56/151 (37.09%), Postives = 88/151 (58.28%), Query Frame = 3
Query:  201 IGSAASFFK-----QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITGR 638
            +G   S+F+     +EM + ++GL  AGKT+++  +  G      IPT+GFN+ +VT  N+  ++WDLGGQ   R  W  Y     AI+YVVD+AD D + IS+ EL  +L +  L+G  L+VL NK D  G ++   +   +GL+++  R
Sbjct:    1 MGGVLSYFRGLLGSREMRILILGLDGAGKTTILYRLQVGEVVTT-IPTIGFNVEQVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSADRDRIGISKDELLYMLREEELAGAILVVLANKQDMDGCMTVAEVHHALGLENLKNR 150          
BLAST of FC920262 vs. ExPASy Swiss-Prot
Match: ARF_DUGJA (ADP-ribosylation factor OS=Dugesia japonica PE=2 SV=3)

HSP 1 Score: 104.375 bits (259), Expect = 5.478e-22
Identity = 51/140 (36.43%), Postives = 84/140 (60.00%), Query Frame = 3
Query:  219 FFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITGR 638
            F K+EM + ++GL  AGKT+++  +  G      IPT+GFN+  V   N++  +WD+GGQ + R +W  Y +    +++VVD+ D + ++ +R EL  +LN+  L    LLV  NK D P A++   +TD++GL S+  R
Sbjct:   13 FGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELRDAVLLVFANKQDLPNAMNPAEITDKLGLHSLRNR 151          
BLAST of FC920262 vs. ExPASy Swiss-Prot
Match: ARF6_RAT (ADP-ribosylation factor 6 OS=Rattus norvegicus GN=Arf6 PE=1 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 5.478e-22
Identity = 51/140 (36.43%), Postives = 79/140 (56.43%), Query Frame = 3
Query:  219 FFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITGR 638
            F  +EM + ++GL  AGKT+++  +  G  S   IPTVGFN+  VT  NV   +WD+GGQ + R +W  Y      +++VVD AD D +  +R ELH ++N   +    +L+  NK D P A+    + +++GL  I  R
Sbjct:    9 FGNKEMRILMLGLDAAGKTTILYKLKLG-QSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDR 147          
BLAST of FC920262 vs. ExPASy Swiss-Prot
Match: ARF6_PIG (ADP-ribosylation factor 6 OS=Sus scrofa GN=ARF6 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.478e-22
Identity = 51/140 (36.43%), Postives = 79/140 (56.43%), Query Frame = 3
Query:  219 FFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITGR 638
            F  +EM + ++GL  AGKT+++  +  G  S   IPTVGFN+  VT  NV   +WD+GGQ + R +W  Y      +++VVD AD D +  +R ELH ++N   +    +L+  NK D P A+    + +++GL  I  R
Sbjct:    9 FGNKEMRILMLGLDAAGKTTILYKLKLG-QSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDR 147          
BLAST of FC920262 vs. ExPASy Swiss-Prot
Match: ARF6_MOUSE (ADP-ribosylation factor 6 OS=Mus musculus GN=Arf6 PE=1 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 5.478e-22
Identity = 51/140 (36.43%), Postives = 79/140 (56.43%), Query Frame = 3
Query:  219 FFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITGR 638
            F  +EM + ++GL  AGKT+++  +  G  S   IPTVGFN+  VT  NV   +WD+GGQ + R +W  Y      +++VVD AD D +  +R ELH ++N   +    +L+  NK D P A+    + +++GL  I  R
Sbjct:    9 FGNKEMRILMLGLDAAGKTTILYKLKLG-QSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDR 147          
BLAST of FC920262 vs. ExPASy Swiss-Prot
Match: ARF6_HUMAN (ADP-ribosylation factor 6 OS=Homo sapiens GN=ARF6 PE=1 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 5.478e-22
Identity = 51/140 (36.43%), Postives = 79/140 (56.43%), Query Frame = 3
Query:  219 FFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITGR 638
            F  +EM + ++GL  AGKT+++  +  G  S   IPTVGFN+  VT  NV   +WD+GGQ + R +W  Y      +++VVD AD D +  +R ELH ++N   +    +L+  NK D P A+    + +++GL  I  R
Sbjct:    9 FGNKEMRILMLGLDAAGKTTILYKLKLG-QSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDR 147          
BLAST of FC920262 vs. ExPASy Swiss-Prot
Match: ARF6_CHICK (ADP-ribosylation factor 6 OS=Gallus gallus GN=ARF6 PE=2 SV=3)

HSP 1 Score: 104.375 bits (259), Expect = 5.478e-22
Identity = 51/140 (36.43%), Postives = 79/140 (56.43%), Query Frame = 3
Query:  219 FFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITGR 638
            F  +EM + ++GL  AGKT+++  +  G  S   IPTVGFN+  VT  NV   +WD+GGQ + R +W  Y      +++VVD AD D +  +R ELH ++N   +    +L+  NK D P A+    + +++GL  I  R
Sbjct:    9 FGNKEMRILMLGLDAAGKTTILYKLKLG-QSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDR 147          
BLAST of FC920262 vs. ExPASy Swiss-Prot
Match: ARF_GIALA (ADP-ribosylation factor OS=Giardia lamblia PE=3 SV=3)

HSP 1 Score: 103.99 bits (258), Expect = 7.155e-22
Identity = 52/143 (36.36%), Postives = 84/143 (58.74%), Query Frame = 3
Query:  219 FFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAAD--PDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITGRE 641
            F K+E+ + ++GL  AGKT+++  +  G      +PT+GFN+  V   N+   +WD+GGQ   R +W  Y +   A++YV+D+AD  P  +  +++ELH LL +  L    LLV  NK D P A+S   LT+ +GL+ +  R+
Sbjct:   13 FSKKEVRILMVGLDAAGKTTILYKLMLGEVVTT-VPTIGFNVETVEYKNINFTVWDVGGQDSIRPLWRHYYQNTDALIYVIDSADLEPKRIEDAKNELHTLLGEDELRDAALLVFANKQDLPKAMSTTDLTERLGLQELKKRD 154          
The following BLAST results are available for this feature:
BLAST of FC920262 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
SAR1B_DICDI4.195e-2240.44GTP-binding protein Sar1B OS=Dictyostelium discoid... [more]
ARF3_DROME4.195e-2236.43ADP-ribosylation factor 3 OS=Drosophila melanogast... [more]
ARL1_DROME5.478e-2237.09ADP-ribosylation factor-like protein 1 OS=Drosophi... [more]
ARF_DUGJA5.478e-2236.43ADP-ribosylation factor OS=Dugesia japonica PE=2 S... [more]
ARF6_RAT5.478e-2236.43ADP-ribosylation factor 6 OS=Rattus norvegicus GN=... [more]
ARF6_PIG5.478e-2236.43ADP-ribosylation factor 6 OS=Sus scrofa GN=ARF6 PE... [more]
ARF6_MOUSE5.478e-2236.43ADP-ribosylation factor 6 OS=Mus musculus GN=Arf6 ... [more]
ARF6_HUMAN5.478e-2236.43ADP-ribosylation factor 6 OS=Homo sapiens GN=ARF6 ... [more]
ARF6_CHICK5.478e-2236.43ADP-ribosylation factor 6 OS=Gallus gallus GN=ARF6... [more]
ARF_GIALA7.155e-2236.36ADP-ribosylation factor OS=Giardia lamblia PE=3 SV... [more]

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Properties
Property NameValue
Genbank descriptionC32006A09EF RVDevelop1 Citrus clementina cDNA clone C32006A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920262 ID=FC920262; Name=FC920262; organism=Citrus clementina; type=EST; length=654bp
GATACCATATTCATTCAAGTTACGTATATTTGGTCAGTTTGTGGGAACGT
ACGAATACGGTAAATCAGTAGACGCAAGCGAAGGAGGAAGCTTCATCAGT
GGGGGGTCAATTCAAGGCTTAGACCTCAATTGGTTTCTGATTCTGTGATC
ATCGTCATCACCATCATCATTATCAATGGGATTGTGGGAAGCTTTTCTGA
ATTGGCTCCGCAGCCTCTTTTTTTAAACAGGAAATGGAGCTGTCCCTGAT
TGGACTTCAGAATGCTGGAAAGACCTCACTTGTAAATGTTGTTGCTACTG
GTGGATATAGCGAGGACATGATCCCTACGGTCGGATTCAACATGAGGAAA
GTGACAAAAGGAAATGTTACAATTAAGCTTTGGGATCTTGGAGGTCAACC
TAGATTCCGCAGTATGTGGGAGCGGTATTGCCGGGCAGTTTCTGCTATTG
TTTATGTGGTTGATGCTGCTGATCCTGACAACCTGAGCATTTCAAGAAGT
GAACTTCATGATTTGCTGAACAAACCCTCACTTAGTGGTATCCCTTTACT
GGTGCTAGGGAACAAGATTGACAAACCCGGAGCTCTATCTAAACAGGCTT
TAACTGATGAAATGGGACTAAAATCCATCACCGGCAGAGAAGTTTGCTGC
TTTA
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