FC920262

Overview
NameFC920262
Unique NameFC920262
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length654
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920262 vs. ExPASy Swiss-Prot
Match: AR13B_HUMAN (ADP-ribosylation factor-like protein 13B OS=Homo sapiens GN=ARL13B PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.033e-20
Identity = 47/140 (33.57%), Postives = 83/140 (59.29%), Query Frame = 3
Query:  228 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITGREVC 647
            +++ L ++GL NAGKT+    +  G Y ED+ PTVGF+   + +G   + ++DLGG  R R +W+ Y      +++VVD++D + +  ++  + ++L  P +SG P+LVL NK DK GAL +  + + + L+ +     C
Sbjct:   20 RKVTLLMVGLDNAGKTATAKGIQ-GEYPEDVAPTVGFSKINLRQGKFEVTIFDLGGGIRIRGIWKNYYAESYGVIFVVDSSDEERMEETKEAMSEMLRHPRISGKPILVLANKQDKEGALGEADVIECLSLEKLVNEHKC 158          
BLAST of FC920262 vs. ExPASy Swiss-Prot
Match: SAR1_CAEEL (GTP-binding protein SAR1 OS=Caenorhabditis elegans GN=ZK180.4 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.349e-20
Identity = 54/157 (34.39%), Postives = 96/157 (61.15%), Query Frame = 3
Query:  171 YQWDCGKLF*IGSAASFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSI-TGR 638
            + W  G L  +G A     ++ +L  +GL NAGKT+L++++     ++  +PT+     +++ G ++   +DLGG  + R +W+ Y  AV A+V+++D AD + +  SR EL  LL    ++ +P+L+LGNKIDKPGALS+  L  ++ ++ + TG+
Sbjct:    5 WDWFNGVLNMLGLA----NKKGKLVFLGLDNAGKTTLLHMLKDDRIAQH-VPTLHPTSEQMSLGGISFTTYDLGGHAQARRVWKDYFPAVDAVVFLIDVADAERMQESRVELESLLQDEQIASVPVLILGNKIDKPGALSEDQLKWQLNIQHMCTGK 156          
BLAST of FC920262 vs. ExPASy Swiss-Prot
Match: ARF12_CAEEL (ADP-ribosylation factor 1-like 2 OS=Caenorhabditis elegans GN=arf-1.2 PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.349e-20
Identity = 50/140 (35.71%), Postives = 82/140 (58.57%), Query Frame = 3
Query:  219 FFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITGR 638
            F K+EM + ++GL  AGKT+++  +  G      IPT+GFN+  V   N++  +WD+GGQ + R +W  Y +    +++VVD+ D + +  +R EL  +L +  L    LLV  NK D P A++   +TD++GL S+  R
Sbjct:   13 FGKREMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVGEAREELMRMLAEDELRDAVLLVFANKQDLPQAMNAAEVTDKLGLHSLRNR 151          
BLAST of FC920262 vs. ExPASy Swiss-Prot
Match: ARF12_CAEBR (ADP-ribosylation factor 1-like 2 OS=Caenorhabditis briggsae GN=arf-1.2 PE=3 SV=3)

HSP 1 Score: 99.7525 bits (247), Expect = 1.349e-20
Identity = 50/140 (35.71%), Postives = 82/140 (58.57%), Query Frame = 3
Query:  219 FFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITGR 638
            F K+EM + ++GL  AGKT+++  +  G      IPT+GFN+  V   N++  +WD+GGQ + R +W  Y +    +++VVD+ D + +  +R EL  +L +  L    LLV  NK D P A++   +TD++GL S+  R
Sbjct:   13 FGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVGEAREELMRMLAEDELRDAVLLVFANKQDLPQAMNAAEVTDKLGLHSLRNR 151          
BLAST of FC920262 vs. ExPASy Swiss-Prot
Match: ARF5_CHICK (ADP-ribosylation factor 5 OS=Gallus gallus GN=ARF5 PE=2 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 1.762e-20
Identity = 49/140 (35.00%), Postives = 80/140 (57.14%), Query Frame = 3
Query:  219 FFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITGR 638
            F K++M + ++GL  AGKT+++  +  G      IPT+GFN+  V   N+   +WD+GGQ + R +W  Y +    +++VVD+ D + +  S  EL  +L +  L    LLV  NK D P A+    LTD++GL+++  R
Sbjct:   13 FGKKQMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESAEELQKMLQEDELRDAVLLVFANKQDMPNAMVVSELTDKLGLQALRSR 151          
BLAST of FC920262 vs. ExPASy Swiss-Prot
Match: ARF3_TAKRU (ADP-ribosylation factor 3 OS=Takifugu rubripes GN=arf3 PE=3 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 1.762e-20
Identity = 49/138 (35.51%), Postives = 82/138 (59.42%), Query Frame = 3
Query:  225 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITGR 638
            K+EM + ++GL  AGKT+++  +  G      IPT+GFN+  V   N++  +WD+GGQ + R +W  Y +    +++VVD+ D + ++ +R EL  +L +  L    LLV  NK D P A++   +TD++GL S+  R
Sbjct:   15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHR 151          
BLAST of FC920262 vs. ExPASy Swiss-Prot
Match: ARF3_RAT (ADP-ribosylation factor 3 OS=Rattus norvegicus GN=Arf3 PE=2 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 1.762e-20
Identity = 49/138 (35.51%), Postives = 82/138 (59.42%), Query Frame = 3
Query:  225 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITGR 638
            K+EM + ++GL  AGKT+++  +  G      IPT+GFN+  V   N++  +WD+GGQ + R +W  Y +    +++VVD+ D + ++ +R EL  +L +  L    LLV  NK D P A++   +TD++GL S+  R
Sbjct:   15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHR 151          
BLAST of FC920262 vs. ExPASy Swiss-Prot
Match: ARF3_PONAB (ADP-ribosylation factor 3 OS=Pongo abelii GN=ARF3 PE=2 SV=3)

HSP 1 Score: 99.3673 bits (246), Expect = 1.762e-20
Identity = 49/138 (35.51%), Postives = 82/138 (59.42%), Query Frame = 3
Query:  225 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITGR 638
            K+EM + ++GL  AGKT+++  +  G      IPT+GFN+  V   N++  +WD+GGQ + R +W  Y +    +++VVD+ D + ++ +R EL  +L +  L    LLV  NK D P A++   +TD++GL S+  R
Sbjct:   15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHR 151          
BLAST of FC920262 vs. ExPASy Swiss-Prot
Match: ARF3_MOUSE (ADP-ribosylation factor 3 OS=Mus musculus GN=Arf3 PE=2 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 1.762e-20
Identity = 49/138 (35.51%), Postives = 82/138 (59.42%), Query Frame = 3
Query:  225 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITGR 638
            K+EM + ++GL  AGKT+++  +  G      IPT+GFN+  V   N++  +WD+GGQ + R +W  Y +    +++VVD+ D + ++ +R EL  +L +  L    LLV  NK D P A++   +TD++GL S+  R
Sbjct:   15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHR 151          
BLAST of FC920262 vs. ExPASy Swiss-Prot
Match: ARF3_HUMAN (ADP-ribosylation factor 3 OS=Homo sapiens GN=ARF3 PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 1.762e-20
Identity = 49/138 (35.51%), Postives = 82/138 (59.42%), Query Frame = 3
Query:  225 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITGR 638
            K+EM + ++GL  AGKT+++  +  G      IPT+GFN+  V   N++  +WD+GGQ + R +W  Y +    +++VVD+ D + ++ +R EL  +L +  L    LLV  NK D P A++   +TD++GL S+  R
Sbjct:   15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHR 151          
The following BLAST results are available for this feature:
BLAST of FC920262 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
AR13B_HUMAN1.033e-2033.57ADP-ribosylation factor-like protein 13B OS=Homo s... [more]
SAR1_CAEEL1.349e-2034.39GTP-binding protein SAR1 OS=Caenorhabditis elegans... [more]
ARF12_CAEEL1.349e-2035.71ADP-ribosylation factor 1-like 2 OS=Caenorhabditis... [more]
ARF12_CAEBR1.349e-2035.71ADP-ribosylation factor 1-like 2 OS=Caenorhabditis... [more]
ARF5_CHICK1.762e-2035.00ADP-ribosylation factor 5 OS=Gallus gallus GN=ARF5... [more]
ARF3_TAKRU1.762e-2035.51ADP-ribosylation factor 3 OS=Takifugu rubripes GN=... [more]
ARF3_RAT1.762e-2035.51ADP-ribosylation factor 3 OS=Rattus norvegicus GN=... [more]
ARF3_PONAB1.762e-2035.51ADP-ribosylation factor 3 OS=Pongo abelii GN=ARF3 ... [more]
ARF3_MOUSE1.762e-2035.51ADP-ribosylation factor 3 OS=Mus musculus GN=Arf3 ... [more]
ARF3_HUMAN1.762e-2035.51ADP-ribosylation factor 3 OS=Homo sapiens GN=ARF3 ... [more]

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Properties
Property NameValue
Genbank descriptionC32006A09EF RVDevelop1 Citrus clementina cDNA clone C32006A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920262 ID=FC920262; Name=FC920262; organism=Citrus clementina; type=EST; length=654bp
GATACCATATTCATTCAAGTTACGTATATTTGGTCAGTTTGTGGGAACGT
ACGAATACGGTAAATCAGTAGACGCAAGCGAAGGAGGAAGCTTCATCAGT
GGGGGGTCAATTCAAGGCTTAGACCTCAATTGGTTTCTGATTCTGTGATC
ATCGTCATCACCATCATCATTATCAATGGGATTGTGGGAAGCTTTTCTGA
ATTGGCTCCGCAGCCTCTTTTTTTAAACAGGAAATGGAGCTGTCCCTGAT
TGGACTTCAGAATGCTGGAAAGACCTCACTTGTAAATGTTGTTGCTACTG
GTGGATATAGCGAGGACATGATCCCTACGGTCGGATTCAACATGAGGAAA
GTGACAAAAGGAAATGTTACAATTAAGCTTTGGGATCTTGGAGGTCAACC
TAGATTCCGCAGTATGTGGGAGCGGTATTGCCGGGCAGTTTCTGCTATTG
TTTATGTGGTTGATGCTGCTGATCCTGACAACCTGAGCATTTCAAGAAGT
GAACTTCATGATTTGCTGAACAAACCCTCACTTAGTGGTATCCCTTTACT
GGTGCTAGGGAACAAGATTGACAAACCCGGAGCTCTATCTAAACAGGCTT
TAACTGATGAAATGGGACTAAAATCCATCACCGGCAGAGAAGTTTGCTGC
TTTA
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