FC920262

Overview
NameFC920262
Unique NameFC920262
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length654
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920262 vs. ExPASy Swiss-Prot
Match: ARL11_HUMAN (ADP-ribosylation factor-like protein 11 OS=Homo sapiens GN=ARL11 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.128e-20
Identity = 50/134 (37.31%), Postives = 83/134 (61.94%), Query Frame = 3
Query:  225 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKV-TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLK 623
            K E ++ ++GL +AGKT+L+  +  G    + +PTVGFN+  +   G+V++ LWD+GGQ   R+ W+ Y      +VYV+D+ D   L  S +EL ++LN P+++G+P LVL NK + P AL    + + + L+
Sbjct:   10 KAEAQVVMMGLDSAGKTTLLYKLK-GHQLVETLPTVGFNVEPLKAPGHVSLTLWDVGGQAPLRASWKDYLEGTDILVYVLDSTDEARLPESAAELTEVLNDPNMAGVPFLVLANKQEAPDALPLLKIRNRLSLE 142          
BLAST of FC920262 vs. ExPASy Swiss-Prot
Match: ARF4_BOVIN (ADP-ribosylation factor 4 OS=Bos taurus GN=ARF4 PE=2 SV=3)

HSP 1 Score: 97.8265 bits (242), Expect = 5.128e-20
Identity = 47/140 (33.57%), Postives = 80/140 (57.14%), Query Frame = 3
Query:  219 FFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITGR 638
            F K++M + ++GL  AGKT+++  +  G      IPT+GFN+  V   N+   +WD+GGQ + R +W  Y +    +++VVD+ D + +     EL  +L +  L    LL+  NK D P A++   +TD++GL+S+  R
Sbjct:   13 FGKKQMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGAEELQKMLQEDELRDAVLLLFANKQDLPNAMAISEMTDKLGLQSLRNR 151          
BLAST of FC920262 vs. ExPASy Swiss-Prot
Match: SAR1_CRYNE (Small COPII coat GTPase SAR1 OS=Cryptococcus neoformans GN=SAR1 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.697e-20
Identity = 52/144 (36.11%), Postives = 86/144 (59.72%), Query Frame = 3
Query:  207 SAASFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITGR 638
            ++     +  +L  +GL NAGKT+L++++     +  + PT+     ++  GNV    +DLGG  + R +W  Y   V  IV++VD+AD +  + S++EL  LL+  SL+ +P L+LGNKID  GA+S++ L  E+GL   TG+
Sbjct:   12 ASLGLMNKSAKLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTLHPTSEELAIGNVKFTTYDLGGHIQARRLWRDYFPEVDGIVFLVDSADAERFAESKAELDSLLSIESLAQVPFLILGNKIDAYGAVSEEQLRHELGLYQTTGK 154          
BLAST of FC920262 vs. ExPASy Swiss-Prot
Match: ARL6_BOVIN (ADP-ribosylation factor-like protein 6 OS=Bos taurus GN=ARL6 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.697e-20
Identity = 45/138 (32.61%), Postives = 89/138 (64.49%), Query Frame = 3
Query:  225 KQEMELSLIGLQNAGKTSLVNVVA-TGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLS--GIPLLVLGNKIDKPGALSKQALTDEMGLKSI 629
            K+E+ +  +GL N+GKT+++N +  +   S+D++PT+GF+++K    +++  ++D+ GQ R+R++WE Y +   AI++V+D++D   + +++ EL  LLN P +    IP+L   NK+D   AL+   ++  + L+ I
Sbjct:   15 KKEVHVLCLGLDNSGKTTIINKLKPSNAQSQDIVPTIGFSIQKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDKLRMVVAKEELRTLLNHPDIKHRRIPILFFANKMDLRDALTSVKVSQLLCLEDI 152          
BLAST of FC920262 vs. ExPASy Swiss-Prot
Match: ARL4D_PONAB (ADP-ribosylation factor-like protein 4D OS=Pongo abelii GN=ARL4D PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.697e-20
Identity = 52/148 (35.14%), Postives = 85/148 (57.43%), Query Frame = 3
Query:  207 SAASFFK--QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT-----KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSI 629
            +A+SF    Q + + +IGL +AGKTSL+  +    + +  +PT GFN  K+         +T ++WD+GGQ + R +W  Y R    +V+VVDAA+ + L  ++ ELH +       G+P+LVL NK D+PGALS   +   + ++ +
Sbjct:   11 TASSFLPHFQALHVVVIGLDSAGKTSLLYRLKFKEFVQS-VPTKGFNTEKIRVPLGGSRGITFQVWDVGGQEKLRPLWRSYTRRTDGLVFVVDAAEAERLEEAKVELHRISRASDNQGVPVLVLANKQDQPGALSAAEVEKRLAVREL 157          
BLAST of FC920262 vs. ExPASy Swiss-Prot
Match: ARL4D_HUMAN (ADP-ribosylation factor-like protein 4D OS=Homo sapiens GN=ARL4D PE=2 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 6.697e-20
Identity = 52/148 (35.14%), Postives = 85/148 (57.43%), Query Frame = 3
Query:  207 SAASFFK--QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT-----KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSI 629
            +A+SF    Q + + +IGL +AGKTSL+  +    + +  +PT GFN  K+         +T ++WD+GGQ + R +W  Y R    +V+VVDAA+ + L  ++ ELH +       G+P+LVL NK D+PGALS   +   + ++ +
Sbjct:   11 TASSFLPHFQALHVVVIGLDSAGKTSLLYRLKFKEFVQS-VPTKGFNTEKIRVPLGGSRGITFQVWDVGGQEKLRPLWRSYTRRTDGLVFVVDAAEAERLEEAKVELHRISRASDNQGVPVLVLANKQDQPGALSAAEVEKRLAVREL 157          
BLAST of FC920262 vs. ExPASy Swiss-Prot
Match: ARL2_MOUSE (ADP-ribosylation factor-like protein 2 OS=Mus musculus GN=Arl2 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.697e-20
Identity = 49/135 (36.30%), Postives = 79/135 (58.52%), Query Frame = 3
Query:  225 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSI 629
            ++E+ L ++GL NAGKT+++     G   + + PT+GFN++ +      + +WD+GGQ   RS W  Y  +   +++VVD+AD   +   + EL  LL +  L+G  LL+  NK D PGALS  A+ + + L SI
Sbjct:   14 ERELRLLMLGLDNAGKTTILKKF-NGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSI 147          
BLAST of FC920262 vs. ExPASy Swiss-Prot
Match: ARL1_RAT (ADP-ribosylation factor-like protein 1 OS=Rattus norvegicus GN=Arl1 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.697e-20
Identity = 51/141 (36.17%), Postives = 80/141 (56.74%), Query Frame = 3
Query:  219 FFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITGRE 641
            F  +EM + ++GL  AGKT+++  +  G      IPT+GFN+  VT  N+  ++WDLGGQ   R  W  Y     A++YVVD+ D D + IS+SEL  +L +  L    L+V  NK D   A++   + + +GL ++  R+
Sbjct:   13 FGTREMRILILGLDGAGKTTILYRLQVGEVVTT-IPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTPSEMANALGLPALKDRK 152          
BLAST of FC920262 vs. ExPASy Swiss-Prot
Match: ARL1_MOUSE (ADP-ribosylation factor-like protein 1 OS=Mus musculus GN=Arl1 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.697e-20
Identity = 51/141 (36.17%), Postives = 80/141 (56.74%), Query Frame = 3
Query:  219 FFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITGRE 641
            F  +EM + ++GL  AGKT+++  +  G      IPT+GFN+  VT  N+  ++WDLGGQ   R  W  Y     A++YVVD+ D D + IS+SEL  +L +  L    L+V  NK D   A++   + + +GL ++  R+
Sbjct:   13 FGTREMRILILGLDGAGKTTILYRLQVGEVVTT-IPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTPSEMANALGLPALKDRK 152          
BLAST of FC920262 vs. ExPASy Swiss-Prot
Match: SAR1B_MOUSE (GTP-binding protein SAR1b OS=Mus musculus GN=Sar1b PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.746e-20
Identity = 47/133 (35.34%), Postives = 84/133 (63.16%), Query Frame = 3
Query:  222 FKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGL 620
            +K+  +L  +GL NAGKT+L++++      +  +PT+     ++T   +T   +DLGG  + R +W+ Y  A++ IV++VD AD + L  S+ EL  L+   +++ +P+L+LGNKID+P A+S++ L +  GL
Sbjct:   22 YKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQH-VPTLHPTSEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGL 153          
The following BLAST results are available for this feature:
BLAST of FC920262 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
ARL11_HUMAN5.128e-2037.31ADP-ribosylation factor-like protein 11 OS=Homo sa... [more]
ARF4_BOVIN5.128e-2033.57ADP-ribosylation factor 4 OS=Bos taurus GN=ARF4 PE... [more]
SAR1_CRYNE6.697e-2036.11Small COPII coat GTPase SAR1 OS=Cryptococcus neofo... [more]
ARL6_BOVIN6.697e-2032.61ADP-ribosylation factor-like protein 6 OS=Bos taur... [more]
ARL4D_PONAB6.697e-2035.14ADP-ribosylation factor-like protein 4D OS=Pongo a... [more]
ARL4D_HUMAN6.697e-2035.14ADP-ribosylation factor-like protein 4D OS=Homo sa... [more]
ARL2_MOUSE6.697e-2036.30ADP-ribosylation factor-like protein 2 OS=Mus musc... [more]
ARL1_RAT6.697e-2036.17ADP-ribosylation factor-like protein 1 OS=Rattus n... [more]
ARL1_MOUSE6.697e-2036.17ADP-ribosylation factor-like protein 1 OS=Mus musc... [more]
SAR1B_MOUSE8.746e-2035.34GTP-binding protein SAR1b OS=Mus musculus GN=Sar1b... [more]

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Properties
Property NameValue
Genbank descriptionC32006A09EF RVDevelop1 Citrus clementina cDNA clone C32006A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920262 ID=FC920262; Name=FC920262; organism=Citrus clementina; type=EST; length=654bp
GATACCATATTCATTCAAGTTACGTATATTTGGTCAGTTTGTGGGAACGT
ACGAATACGGTAAATCAGTAGACGCAAGCGAAGGAGGAAGCTTCATCAGT
GGGGGGTCAATTCAAGGCTTAGACCTCAATTGGTTTCTGATTCTGTGATC
ATCGTCATCACCATCATCATTATCAATGGGATTGTGGGAAGCTTTTCTGA
ATTGGCTCCGCAGCCTCTTTTTTTAAACAGGAAATGGAGCTGTCCCTGAT
TGGACTTCAGAATGCTGGAAAGACCTCACTTGTAAATGTTGTTGCTACTG
GTGGATATAGCGAGGACATGATCCCTACGGTCGGATTCAACATGAGGAAA
GTGACAAAAGGAAATGTTACAATTAAGCTTTGGGATCTTGGAGGTCAACC
TAGATTCCGCAGTATGTGGGAGCGGTATTGCCGGGCAGTTTCTGCTATTG
TTTATGTGGTTGATGCTGCTGATCCTGACAACCTGAGCATTTCAAGAAGT
GAACTTCATGATTTGCTGAACAAACCCTCACTTAGTGGTATCCCTTTACT
GGTGCTAGGGAACAAGATTGACAAACCCGGAGCTCTATCTAAACAGGCTT
TAACTGATGAAATGGGACTAAAATCCATCACCGGCAGAGAAGTTTGCTGC
TTTA
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