FC920264

Overview
NameFC920264
Unique NameFC920264
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length672
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920264 vs. ExPASy Swiss-Prot
Match: SAHH_CORGB (Adenosylhomocysteinase OS=Corynebacterium glutamicum (strain R) GN=ahcY PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.468e-41
Identity = 88/170 (51.76%), Postives = 108/170 (63.53%), Query Frame = 3
Query:  165 EFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDH--------XXXXXXXXXXXXXXWKGETLQEYWWCTEKALDWGPGGGPDLIVDDGGDATLLIHEGVKAEEIYEKTGKLPDPASTDNAEF 650
            +FKV DLS A+ GR +I LAE EMPGLM  R EF   QP KGA+I GS+HMT+QTAVLIETLTALGAEVRW SCNIFSTQD                       WKGE+L+EYWWC  +   WG    P++I+DDGGDAT+ +  G +    YE+ G +P   + D+ E+
Sbjct:    6 DFKVADLSLAEAGRHQIRLAEYEMPGLMQLRKEFADEQPLKGARIAGSIHMTVQTAVLIETLTALGAEVRWASCNIFSTQDEAAAAIVVGSGTVEEPAGVPVFAWKGESLEEYWWCINQIFSWG-DELPNMILDDGGDATMAVIRGRE----YEQAGLVPPAEANDSDEY 170          
BLAST of FC920264 vs. ExPASy Swiss-Prot
Match: SAHH_BORPE (Adenosylhomocysteinase OS=Bordetella pertussis GN=ahcY PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.468e-41
Identity = 83/143 (58.04%), Postives = 100/143 (69.93%), Query Frame = 3
Query:  165 EFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWKGETLQEYWWCTEKALDWGPGGGPDLIVDDGGDATLLIHEGVKAEE 593
            ++ V D++ A +GR E+ +AE EMPGLMA R E+  SQP KGA+I GSLHMTIQT VLIETL ALGAEVRW SCNIFSTQDH               KGETL+EYW  T K  +W  G   ++I+DDGGDATLL+H G +AE+
Sbjct:   11 DYIVADMALAGWGRRELAIAETEMPGLMAIRDEYAASQPLKGARIAGSLHMTIQTGVLIETLVALGAEVRWASCNIFSTQDHAAAAIAATGTPVFAIKGETLEEYWQYTHKIFEWPEGRHANMILDDGGDATLLLHLGARAEQ 153          
BLAST of FC920264 vs. ExPASy Swiss-Prot
Match: SAHH_BORPA (Adenosylhomocysteinase OS=Bordetella parapertussis GN=ahcY PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.468e-41
Identity = 83/143 (58.04%), Postives = 100/143 (69.93%), Query Frame = 3
Query:  165 EFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWKGETLQEYWWCTEKALDWGPGGGPDLIVDDGGDATLLIHEGVKAEE 593
            ++ V D++ A +GR E+ +AE EMPGLMA R E+  SQP KGA+I GSLHMTIQT VLIETL ALGAEVRW SCNIFSTQDH               KGETL+EYW  T K  +W  G   ++I+DDGGDATLL+H G +AE+
Sbjct:   11 DYIVADMALAGWGRRELAIAETEMPGLMAIRDEYAASQPLKGARIAGSLHMTIQTGVLIETLVALGAEVRWASCNIFSTQDHAAAAIAATGTPVFAIKGETLEEYWQYTHKIFEWPEGRHANMILDDGGDATLLLHLGARAEQ 153          
BLAST of FC920264 vs. ExPASy Swiss-Prot
Match: SAHH_BORBR (Adenosylhomocysteinase OS=Bordetella bronchiseptica GN=ahcY PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.468e-41
Identity = 83/143 (58.04%), Postives = 100/143 (69.93%), Query Frame = 3
Query:  165 EFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWKGETLQEYWWCTEKALDWGPGGGPDLIVDDGGDATLLIHEGVKAEE 593
            ++ V D++ A +GR E+ +AE EMPGLMA R E+  SQP KGA+I GSLHMTIQT VLIETL ALGAEVRW SCNIFSTQDH               KGETL+EYW  T K  +W  G   ++I+DDGGDATLL+H G +AE+
Sbjct:   11 DYIVADMALAGWGRRELAIAETEMPGLMAIRDEYAASQPLKGARIAGSLHMTIQTGVLIETLVALGAEVRWASCNIFSTQDHAAAAIAATGTPVFAIKGETLEEYWQYTHKIFEWPEGRHANMILDDGGDATLLLHLGARAEQ 153          
BLAST of FC920264 vs. ExPASy Swiss-Prot
Match: SAHH_AGRT5 (Adenosylhomocysteinase OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=ahcY PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.468e-41
Identity = 82/143 (57.34%), Postives = 101/143 (70.63%), Query Frame = 3
Query:  162 REFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWKGETLQEYWWCTEKALDWGPGGGPDLIVDDGGDATLLIHEGVKAE 590
            +++ V D++ A FGR E+++AE EMPGLM+CR EFG S+P KGA+ITGSLHMTIQT VLIETL  LGAE+RW SCNIFSTQDH               KGE+L EYW  T+K   W  GG  ++I+DDGGDAT+ I  G +AE
Sbjct:    5 KDYIVADINLAAFGRKELDIAETEMPGLMSCRKEFGESKPLKGARITGSLHMTIQTGVLIETLKELGAEIRWASCNIFSTQDHAAAAIAAAGIPVFAVKGESLTEYWEYTDKIFQWTDGGLSNMILDDGGDATMYILLGARAE 147          
BLAST of FC920264 vs. ExPASy Swiss-Prot
Match: SAHH_HALHL (Adenosylhomocysteinase OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=ahcY PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.223e-41
Identity = 80/140 (57.14%), Postives = 98/140 (70.00%), Query Frame = 3
Query:  156 SGREFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWKGETLQEYWWCTEKALDWGPGGGPDLIVDDGGDATLLIHE 575
            S +++KV D+S AD+GR EI++AE EMPGLM  R EF   +P KGA+I G LHMTIQTAVLIETL  LGAEVRW SCNIFSTQD               WKGET +EYWWC E+ ++   G  P++++DDGGD T +IHE
Sbjct:    2 SNQDYKVADISLADWGRKEIKIAESEMPGLMETRREFAAQKPLKGARIAGCLHMTIQTAVLIETLQELGAEVRWSSCNIFSTQDQAAAAVAANGTPVFAWKGETEEEYWWCIEQTINGPDGWKPNMLLDDGGDLTAVIHE 141          
BLAST of FC920264 vs. ExPASy Swiss-Prot
Match: SAHH_GEOSL (Adenosylhomocysteinase OS=Geobacter sulfurreducens GN=ahcY PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.223e-41
Identity = 81/156 (51.92%), Postives = 109/156 (69.87%), Query Frame = 3
Query:  126 TMALSVEKSASGREFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWKGETLQEYWWCTEKALDWGPGGGPDLIVDDGGDATLLIHEGVKAEE 593
            T  ++ + + +  ++ + D+S A +GR E+ +AE EMPGLMA R E+  ++P +GA+I GSLHMTIQTA+LIETL ALGAEVRW SCNIFSTQDH              +KGE+L+EYW  T +  +W  GG P++I+DDGGDATLL+H G  AE+
Sbjct:    2 TQPVARDTAGTFSDYCISDISLAAWGRKEMIIAETEMPGLMAIREEYAATRPLQGARIAGSLHMTIQTAMLIETLVALGAEVRWASCNIFSTQDHAAAAIAAAGIPVFAYKGESLEEYWEFTHRIFEWHDGGTPNMILDDGGDATLLLHLGSDAEK 157          
BLAST of FC920264 vs. ExPASy Swiss-Prot
Match: SAHH_GRABC (Adenosylhomocysteinase OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=ahcY PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.209e-41
Identity = 81/149 (54.36%), Postives = 103/149 (69.13%), Query Frame = 3
Query:  129 MALSVEKSASGREFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWKGETLQEYWWCTEKALDWGPGGGPDLIVDDGGDATLLIHE 575
            M  S+  +A   ++KV+D+  AD+GR EI +AE EMPGLMA R E+G S+P  GA+I G LHMTIQTAVLIETLTALGA VRW SCNIFSTQDH              WKG + +E+WWC E+ +    G  P++I+DDGGD T+L+H+
Sbjct:    1 MESSMPDTAVAEDYKVRDIGLADWGRKEIRMAEDEMPGLMALREEYGNSKPLAGARIAGCLHMTIQTAVLIETLTALGATVRWSSCNIFSTQDHAAAGIAAAGIPVFAWKGLSEEEFWWCIEQTVRGPDGWTPNMILDDGGDLTVLMHD 149          
BLAST of FC920264 vs. ExPASy Swiss-Prot
Match: SAHH_CAEEL (Adenosylhomocysteinase OS=Caenorhabditis elegans GN=ahcy-1 PE=1 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.209e-41
Identity = 83/135 (61.48%), Postives = 98/135 (72.59%), Query Frame = 3
Query:  168 FKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWKGETLQEYWWCTEKALDWGPGGGPDLIVDDGGDATLLIH 572
            +KV D+  ADFGR EI LAE EMPGLMA R+++GPSQP KGA+I G LHMTIQTAVLIETLTALGAEV+W SCNIFSTQDH              WKGET +EY WC E+ + +  G   ++I+DDGGD T L+H
Sbjct:    8 YKVADIKLADFGRKEIILAENEMPGLMAMRSKYGPSQPLKGARIAGCLHMTIQTAVLIETLTALGAEVQWSSCNIFSTQDHAAAAIAQTGVPVYAWKGETDEEYEWCIEQTIVFKDGQPLNMILDDGGDLTNLVH 142          
BLAST of FC920264 vs. ExPASy Swiss-Prot
Match: SAHH_XANCP (Adenosylhomocysteinase OS=Xanthomonas campestris pv. campestris GN=ahcY PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 5.497e-41
Identity = 84/155 (54.19%), Postives = 106/155 (68.39%), Query Frame = 3
Query:  138 SVEKSASGREFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWKGETLQEYWWCTEKALDW----GPGGGPDLIVDDGGDATLLIHEGVKAE 590
            +V K+    ++K+ D+S AD+GR E+++AE EMPGLM+ R +   ++P K  +ITGSLHMTIQTAVLIETL  +GA VRW SCNIFSTQDH              WKGETL+EYW CT  AL +    G   GP+L+VDDGGD TLLIH+G + E
Sbjct:    3 AVAKTVPHTDYKIADISLADWGRKELDIAEHEMPGLMSIRRKHAQTKPLKDVRITGSLHMTIQTAVLIETLKDIGANVRWASCNIFSTQDHAAAAIAATGTPVFAWKGETLEEYWDCTLDALTFTLPDGTLTGPELVVDDGGDVTLLIHKGYELE 157          
The following BLAST results are available for this feature:
BLAST of FC920264 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 235
Match NameE-valueIdentityDescription
SAHH_CORGB2.468e-4151.76Adenosylhomocysteinase OS=Corynebacterium glutamic... [more]
SAHH_BORPE2.468e-4158.04Adenosylhomocysteinase OS=Bordetella pertussis GN=... [more]
SAHH_BORPA2.468e-4158.04Adenosylhomocysteinase OS=Bordetella parapertussis... [more]
SAHH_BORBR2.468e-4158.04Adenosylhomocysteinase OS=Bordetella bronchiseptic... [more]
SAHH_AGRT52.468e-4157.34Adenosylhomocysteinase OS=Agrobacterium tumefacien... [more]
SAHH_HALHL3.223e-4157.14Adenosylhomocysteinase OS=Halorhodospira halophila... [more]
SAHH_GEOSL3.223e-4151.92Adenosylhomocysteinase OS=Geobacter sulfurreducens... [more]
SAHH_GRABC4.209e-4154.36Adenosylhomocysteinase OS=Granulibacter bethesdens... [more]
SAHH_CAEEL4.209e-4161.48Adenosylhomocysteinase OS=Caenorhabditis elegans G... [more]
SAHH_XANCP5.497e-4154.19Adenosylhomocysteinase OS=Xanthomonas campestris p... [more]

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Properties
Property NameValue
Genbank descriptionC32006A11EF RVDevelop1 Citrus clementina cDNA clone C32006A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920264 ID=FC920264; Name=FC920264; organism=Citrus clementina; type=EST; length=672bp
GGCTCACACCCACTCTCTCTCTCTCTCGCTTGTACAATCATTCACTTTGT
TTGGTTAGTTTCCAAAGAGAGAGTAGATTGCCCTCTCTTCCTTCTTTCTT
TTAGATCCATCAATTCTATTAATCAACCATGGCTTTGTCCGTCGAGAAAT
CCGCTAGCGGTCGTGAATTCAAGGTGAAGGATCTGTCCCAGGCTGACTTC
GGCCGCCTCGAAATCGAGTTGGCCGAAGTCGAAATGCCGGGGCTCATGGC
TTGCCGCGCCGAGTTCGGCCCTTCACAGCCTTTCAAAGGAGCCAAGATCA
CCGGTTCACTCCACATGACCATCCAGACGGCCGTCCTCATCGAGACACTC
ACCGCTCTCGGCGCCGAAGTCCGCTGGTGCTCCTGCAACATCTTCTCAAC
CCAAGACCACGCGGCCGCCGCCATCGCACGTGACTCCGCCTCCGTCTTTG
CCTGGAAGGGTGAGACCCTCCAGGAGTACTGGTGGTGCACGGAGAAAGCC
CTGGACTGGGGTCCCGGCGGCGGCCCAGATCTCATCGTCGATGACGGTGG
TGACGCCACGTTGTTGATCCACGAGGGAGTCAAAGCTGAGGAGATCTACG
AGAAGACCGGGAAGTTGCCCGACCCGGCCTCCACCGACAACGCCGAGTTT
CAGATTGTTTTGACTATCATTA
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