FC920265

Overview
NameFC920265
Unique NameFC920265
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12558 contig Ccv1_Contig12558:133..826. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920265 vs. ExPASy Swiss-Prot
Match: KCAB1_MOUSE (Voltage-gated potassium channel subunit beta-1 OS=Mus musculus GN=Kcnab1 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.575e-16
Identity = 65/222 (29.28%), Postives = 106/222 (47.75%), Query Frame = 2
Query:   38 VKRIKLGSQGLEVSAQGLGCMGMSAFYGPPKPESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKAL--KGGMRERVELATKFGISYADGKREI-RG-DPAYARAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAVH------PITAVQLEWSLWSRD-VEAEIVPTCRELGIGIVAYSPLGRGFFS 670
            +K   LG  GL VS  GLG       +G    +     L+  A  SG+ L DT+++Y     E++LG  +  KG  R  + + TK    Y  GK E  RG    +     + SL+RL ++ +D+ + +R D+  P+E  +  +  ++ +G   Y G S  SA  I  A++V       P    Q E+ L+ R+ VE ++     ++G+G + +SPL  G  S
Sbjct:   71 MKYRNLGKSGLRVSCLGLGTW---VTFGGQISDEVAERLMTIAYESGVNLFDTAEVYAAGKAEVILGSIIKKKGWRRSSLVITTKL---YWGGKAETERGLSRKHIIEGLKGSLQRLQLEYVDVVFANRPDSNTPMEEIVRAMTHVINQGMAMYWGTSRWSAMEIMEAYSVARQFNMIPPVCEQAEYHLFQREKVEVQLPELYHKIGVGAMTWSPLACGIIS 286          
BLAST of FC920265 vs. ExPASy Swiss-Prot
Match: KCAB1_BOVIN (Voltage-gated potassium channel subunit beta-1 OS=Bos taurus GN=KCNAB1 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.575e-16
Identity = 65/222 (29.28%), Postives = 106/222 (47.75%), Query Frame = 2
Query:   38 VKRIKLGSQGLEVSAQGLGCMGMSAFYGPPKPESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKAL--KGGMRERVELATKFGISYADGKREI-RG-DPAYARAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAVH------PITAVQLEWSLWSRD-VEAEIVPTCRELGIGIVAYSPLGRGFFS 670
            +K   LG  GL VS  GLG       +G    +     L+  A  SG+ L DT+++Y     E++LG  +  KG  R  + + TK    Y  GK E  RG    +     + SL+RL ++ +D+ + +R D+  P+E  +  +  ++ +G   Y G S  SA  I  A++V       P    Q E+ L+ R+ VE ++     ++G+G + +SPL  G  S
Sbjct:   71 MKYRNLGKSGLRVSCLGLGTW---VTFGGQISDEVAERLMTIAYESGVNLFDTAEVYAAGKAEVILGSIIKKKGWRRSSLVITTKL---YWGGKAETERGLSRKHIIEGLKGSLQRLQLEYVDVVFANRPDSNTPMEEIVRAMTHVINQGMAMYWGTSRWSAMEIMEAYSVARQFNMIPPVCEQAEYHLFQREKVEVQLPELYHKIGVGAMTWSPLACGIIS 286          
BLAST of FC920265 vs. ExPASy Swiss-Prot
Match: YGHZ_ECOLI (Uncharacterized protein yghZ OS=Escherichia coli (strain K12) GN=yghZ PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.120e-15
Identity = 59/216 (27.31%), Postives = 103/216 (47.69%), Query Frame = 2
Query:   56 GSQGLEVSAQGLGCMGMSAFYGPPKPESDMIALIHHAINSGITLLDTSDIYGPHTN--EILLGKALK---GGMRERVELATKFGISYADGKREIRGDPAYARAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAV-----HPITAVQLEWSLWSRDVE-AEIVPTCRELGIGIVAYSPLGRGFFS 670
            G  GL + A  LG       +G         A++  A + GIT  D ++ YGP     E   G+ L+      R+ + ++TK G     G     G   Y  A+ + SLKR+ ++ +D++Y HR+D   P+E T   L   V+ GK  Y+G+S  S    ++   +      P+   Q  ++L +R V+ + ++ T +  G+G +A++PL +G  +
Sbjct:   19 GKSGLRLPALSLGLWHN---FGHVNALESQRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLREDFAAYRDELIISTKAGYDMWPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTPMEETASALAHAVQSGKALYVGISSYSPERTQKMVELLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAFTPLAQGLLT 231          
BLAST of FC920265 vs. ExPASy Swiss-Prot
Match: KCAB1_RABIT (Voltage-gated potassium channel subunit beta-1 OS=Oryctolagus cuniculus GN=KCNAB1 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.120e-15
Identity = 64/217 (29.49%), Postives = 104/217 (47.93%), Query Frame = 2
Query:   53 LGSQGLEVSAQGLGCMGMSAFYGPPKPESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKAL--KGGMRERVELATKFGISYADGKREI-RG-DPAYARAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAVH------PITAVQLEWSLWSRD-VEAEIVPTCRELGIGIVAYSPLGRGFFS 670
            LG  GL VS  GLG       +G    +     L+  A  SG+ L DT+++Y     E++LG  +  KG  R  + + TK    Y  GK E  RG    +     + SL+RL ++ +D+ + +R D+  P+E  +  +  ++ +G   Y G S  SA  I  A++V       P    Q E+ L+ R+ VE ++     ++G+G + +SPL  G  S
Sbjct:   94 LGKSGLRVSCLGLGTW---VTFGGQISDEVAERLMTIAYESGVNLFDTAEVYAAGKAEVILGSIIKKKGWRRSSLVITTKL---YWGGKAETERGLSRKHIIEGLKGSLQRLQLEYVDVVFANRPDSNTPMEEIVRAMTHVINQGMAMYWGTSRWSAMEIMEAYSVARQFNMIPPVCEQAEYHLFQREKVEVQLPELYHKIGVGAMTWSPLACGIIS 304          
BLAST of FC920265 vs. ExPASy Swiss-Prot
Match: KCAB1_MUSPU (Voltage-gated potassium channel subunit beta-1 OS=Mustela putorius GN=KCNAB1 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.120e-15
Identity = 64/217 (29.49%), Postives = 104/217 (47.93%), Query Frame = 2
Query:   53 LGSQGLEVSAQGLGCMGMSAFYGPPKPESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKAL--KGGMRERVELATKFGISYADGKREI-RG-DPAYARAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAVH------PITAVQLEWSLWSRD-VEAEIVPTCRELGIGIVAYSPLGRGFFS 670
            LG  GL VS  GLG       +G    +     L+  A  SG+ L DT+++Y     E++LG  +  KG  R  + + TK    Y  GK E  RG    +     + SL+RL ++ +D+ + +R D+  P+E  +  +  ++ +G   Y G S  SA  I  A++V       P    Q E+ L+ R+ VE ++     ++G+G + +SPL  G  S
Sbjct:   83 LGKSGLRVSCLGLGTW---VTFGGQISDEVAERLMTIAYESGVNLFDTAEVYAAGKAEVILGSIIKKKGWRRSSLVITTKL---YWGGKAETERGLSRKHIIEGLKGSLQRLQLEYVDVVFANRPDSNTPMEEIVRAMTHVINQGMAMYWGTSRWSAMEIMEAYSVARQFNMIPPVCEQAEYHLFQREKVEVQLPELYHKIGVGAMTWSPLACGIIS 293          
BLAST of FC920265 vs. ExPASy Swiss-Prot
Match: KCAB1_HUMAN (Voltage-gated potassium channel subunit beta-1 OS=Homo sapiens GN=KCNAB1 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.120e-15
Identity = 64/217 (29.49%), Postives = 104/217 (47.93%), Query Frame = 2
Query:   53 LGSQGLEVSAQGLGCMGMSAFYGPPKPESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKAL--KGGMRERVELATKFGISYADGKREI-RG-DPAYARAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAVH------PITAVQLEWSLWSRD-VEAEIVPTCRELGIGIVAYSPLGRGFFS 670
            LG  GL VS  GLG       +G    +     L+  A  SG+ L DT+++Y     E++LG  +  KG  R  + + TK    Y  GK E  RG    +     + SL+RL ++ +D+ + +R D+  P+E  +  +  ++ +G   Y G S  SA  I  A++V       P    Q E+ L+ R+ VE ++     ++G+G + +SPL  G  S
Sbjct:   94 LGKSGLRVSCLGLGTW---VTFGGQISDEVAERLMTIAYESGVNLFDTAEVYAAGKAEVILGSIIKKKGWRRSSLVITTKL---YWGGKAETERGLSRKHIIEGLKGSLQRLQLEYVDVVFANRPDSNTPMEEIVRAMTHVINQGMAMYWGTSRWSAMEIMEAYSVARQFNMIPPVCEQAEYHLFQREKVEVQLPELYHKIGVGAMTWSPLACGIIS 304          
BLAST of FC920265 vs. ExPASy Swiss-Prot
Match: KCAB2_XENLA (Voltage-gated potassium channel subunit beta-2 OS=Xenopus laevis GN=kcnab2 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.463e-15
Identity = 64/217 (29.49%), Postives = 106/217 (48.85%), Query Frame = 2
Query:   53 LGSQGLEVSAQGLGCMGMSAFYGPPKPESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALK--GGMRERVELATKFGISYADGKREI-RG-DPAYARAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAVH------PITAVQLEWSLWSRD-VEAEIVPTCRELGIGIVAYSPLGRGFFS 670
            LG  GL VS  GLG       +G    +     L+  A ++GI L DT+++Y     E++LG  +K  G  R  + + TK    +  GK E  RG    +     +ASL+RL +D +D+ + +R D   P+E T+  +  ++ +G   Y G S  S+  I  A++V       P    Q E+ ++ R+ VE ++     ++G+G + +SPL  G  S
Sbjct:   42 LGKSGLRVSCLGLGTW---VTFGGQITDEMAEQLMTLAYDNGINLFDTAEVYAAGKAEVVLGNIIKKKGWRRSSLVITTKI---FWGGKAETERGLSRKHIIEGLKASLERLQLDYVDVVFANRPDPNTPMEETVRAMTHVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELFHKIGVGAMTWSPLACGIVS 252          
BLAST of FC920265 vs. ExPASy Swiss-Prot
Match: AAD_PHACH (Aryl-alcohol dehydrogenase [NADP+] OS=Phanerochaete chrysosporium PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.910e-15
Identity = 60/219 (27.40%), Postives = 105/219 (47.95%), Query Frame = 2
Query:   65 GLEVSAQGLGCMGMSAFYGP----PKPESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKG-GMRERVELATKFGISYADGK--REIRGDPAYARAACEA-------SLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAH------AVHPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYSPLGRG 661
            GL VS   LG M +   + P       +     L+    N+G   +DT+++Y   T+E  +G+ ++  G R+++ +ATK+ + Y  G    EI     Y   + ++       SL++L    ID++Y H  D    IE  +  L  LV +GK+ Y+G+S+  A  + +A+         P    + EW++  RD+E +I+P C   G+ I  ++ L  G
Sbjct:   25 GLHVSPIQLGAMSIGDKWHPYGMGTMDKEASFKLLDAFYNAGGNFIDTANVYQDETSEEFIGEWMEARGNRDQMVVATKYSLVYKRGASFEEIPQKTQYVGNSLKSMHISVHDSLRKLRTSYIDIFYVHFWDYTCTIEEVMNGLHNLVAQGKVLYLGVSDTPAWVVSKANNYARMAGKTPFVIYEGEWNITMRDMERDIIPMCIHEGMAIAPWNVLCAG 243          
BLAST of FC920265 vs. ExPASy Swiss-Prot
Match: KCAB_ORYSJ (Probable voltage-gated potassium channel subunit beta OS=Oryza sativa subsp. japonica GN=KOB1 PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 3.259e-15
Identity = 64/213 (30.05%), Postives = 99/213 (46.48%), Query Frame = 2
Query:   53 LGSQGLEVSAQGLGCMGMSAFYGPPKPESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALK--GGMRERVELATKFGISYADGKREIRGDPAYARAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSEASA-------STIRRAHAVHPITAVQLEWSLWSR-DVEAEIVPTCRELGIGIVAYSPLGRG 661
            LG  GL VS    G       +G      +  AL+    ++G+   D +++Y     E ++G+A++  G  R  V ++TK       G  +      +       SLKRLD+D +D+ Y HR D   P+E T+  +  +++ G   Y G SE SA       S   R   V PI   Q E++L+SR  VE+E +P     G+G+  +SPL  G
Sbjct:    6 LGRSGLRVSQLSYGAW---VTFGNQLDVKEAKALLQACRDAGVNFFDNAEVYANGRAEEIMGQAMRDLGWRRSDVVVSTKLFWG-GQGPNDKGLSRKHIVEGLRGSLKRLDMDYVDVVYCHRPDATTPVEETVRAMNWVIDHGMAFYWGTSEWSAQQITEAWSVANRLDLVGPIVE-QPEYNLFSRHKVESEFLPLYSTYGLGLTTWSPLASG 213          
BLAST of FC920265 vs. ExPASy Swiss-Prot
Match: KCAB2_HUMAN (Voltage-gated potassium channel subunit beta-2 OS=Homo sapiens GN=KCNAB2 PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 4.256e-15
Identity = 63/217 (29.03%), Postives = 106/217 (48.85%), Query Frame = 2
Query:   53 LGSQGLEVSAQGLGCMGMSAFYGPPKPESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALK--GGMRERVELATKFGISYADGKREI-RG-DPAYARAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAV------HPITAVQLEWSLWSRD-VEAEIVPTCRELGIGIVAYSPLGRGFFS 670
            LG  GL VS  GLG       +G    +     L+  A ++GI L DT+++Y     E++LG  +K  G  R  + + TK    +  GK E  RG    +     +ASL+RL ++ +D+ + +R D   P+E T+  +  ++ +G   Y G S  S+  I  A++V       P    Q E+ ++ R+ VE ++     ++G+G + +SPL  G  S
Sbjct:   42 LGKSGLRVSCLGLGTW---VTFGGQITDEMAEQLMTLAYDNGINLFDTAEVYAAGKAEVVLGNIIKKKGWRRSSLVITTKI---FWGGKAETERGLSRKHIIEGLKASLERLQLEYVDVVFANRPDPNTPMEETVRAMTHVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLTPPICEQAEYHMFQREKVEVQLPELFHKIGVGAMTWSPLACGIVS 252          
The following BLAST results are available for this feature:
BLAST of FC920265 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
KCAB1_MOUSE8.575e-1629.28Voltage-gated potassium channel subunit beta-1 OS=... [more]
KCAB1_BOVIN8.575e-1629.28Voltage-gated potassium channel subunit beta-1 OS=... [more]
YGHZ_ECOLI1.120e-1527.31Uncharacterized protein yghZ OS=Escherichia coli (... [more]
KCAB1_RABIT1.120e-1529.49Voltage-gated potassium channel subunit beta-1 OS=... [more]
KCAB1_MUSPU1.120e-1529.49Voltage-gated potassium channel subunit beta-1 OS=... [more]
KCAB1_HUMAN1.120e-1529.49Voltage-gated potassium channel subunit beta-1 OS=... [more]
KCAB2_XENLA1.463e-1529.49Voltage-gated potassium channel subunit beta-2 OS=... [more]
AAD_PHACH1.910e-1527.40Aryl-alcohol dehydrogenase [NADP+] OS=Phanerochaet... [more]
KCAB_ORYSJ3.259e-1530.05Probable voltage-gated potassium channel subunit b... [more]
KCAB2_HUMAN4.256e-1529.03Voltage-gated potassium channel subunit beta-2 OS=... [more]

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Properties
Property NameValue
Genbank descriptionC32006A12EF RVDevelop1 Citrus clementina cDNA clone C32006A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920265 ID=FC920265; Name=FC920265; organism=Citrus clementina; type=EST; length=694bp
GGGGGGATATCAAAAAAAAAAAAAAACGGCGGGGGCAGTGAAGAGAATCA
AGCTTGGTTCACAAGGTCTAGAGGTTTCAGCACAAGGCTTAGGATGCATG
GGCATGTCCGCCTTCTACGGGCCCCCGAAGCCAGAATCCGACATGATCGC
CTTGATCCACCATGCCATTAACAGTGGCATCACTCTACTTGACACCTCCG
ATATTTACGGGCCCCACACCAATGAAATCCTTCTGGGAAAGGCTTTGAAG
GGAGGAATGAGGGAAAGAGTTGAATTGGCTACTAAATTTGGTATCAGCTA
TGCGGATGGTAAAAGGGAAATTCGCGGTGACCCGGCTTATGCGAGAGCTG
CATGTGAGGCCAGCTTGAAGCGTCTGGATATTGATTGTATTGATCTTTAT
TACCAACATCGCATTGATACACGAGTTCCCATTGAAGTCACGATTGGAGA
ACTCAAGAAACTAGTTGAAGAGGGTAAGATAAAGTATATAGGTCTGTCCG
AGGCTTCTGCCTCAACAATTAGACGAGCTCATGCTGTCCATCCAATAACA
GCTGTGCAGTTGGAATGGTCCTTGTGGTCACGAGATGTGGAGGCAGAGAT
TGTTCCTACTTGCAGGGAACTTGGCATTGGAATTGTTGCATACAGTCCTC
TAGGACGAGGATTTTTTTCCTCAGGGCCTAAGTTGGTTGAAAGC
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