FC920266

Overview
NameFC920266
Unique NameFC920266
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length668
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14439 contig Ccv1_Contig14439:38..707. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920266 vs. ExPASy Swiss-Prot
Match: SAP10_ORYSJ (Zinc finger A20 and AN1 domain-containing stress-associated protein 10 OS=Oryza sativa subsp. japonica GN=SAP10 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.035e-15
Identity = 46/146 (31.51%), Postives = 69/146 (47.26%), Query Frame = 1
Query:  214 GPILCINNCGFFGSVATMNMCSKCYKDIMLKQDQAKLAASSIGSIVNETSSSNGSESVAAATVDVQASSVEPKIISVQPSCASELSESVEAKPKEGPSRCSSCKKRVGLTGFKCRCGNLYCVSHRYSEQHNCXFDYRTAARDAIIK 651
            G  +C   CGFFGS AT  +CSKCYK    +Q Q +    +     ++TS    ++       D      E   +   P+  ++             +RC +C+K+VGL GF CRCG ++C +H       C FDY+ A R+AI +
Sbjct:   14 GAAMCAAGCGFFGSAATDGLCSKCYKQ---QQPQPRHLIGTAAGDSDKTSLKVVADLSTLVIKDNSGVGGEGTTVMAPPATVTKAK-----------NRCKACRKKVGLLGFPCRCGGMFCGAHA------CAFDYKAAGREAIAR 139          
BLAST of FC920266 vs. ExPASy Swiss-Prot
Match: SAP15_ORYSJ (Zinc finger AN1 domain-containing stress-associated protein 15 OS=Oryza sativa subsp. japonica GN=SAP15 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.951e-14
Identity = 31/50 (62.00%), Postives = 40/50 (80.00%), Query Frame = 1
Query:  505 SRCSSCKKRVGLTGFKCRCGNLYCVSHRYSEQHNCXFDYRTAARDAIIKA 654
            +RC+ C+KRVGLTGF+CRCG L+C  HR+SE H C FDY+TA R+ I +A
Sbjct:  113 NRCNVCRKRVGLTGFRCRCGELFCPRHRHSETHECSFDYKTAGREEIARA 162          
BLAST of FC920266 vs. ExPASy Swiss-Prot
Match: SAP14_ORYSJ (Zinc finger AN1 domain-containing stress-associated protein 14 OS=Oryza sativa subsp. japonica GN=SAP14 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.652e-13
Identity = 30/65 (46.15%), Postives = 45/65 (69.23%), Query Frame = 1
Query:  457 ASELSESVEAKPKEGPSRCSSCKKRVGLTGFKCRCGNLYCVSHRYSEQHNCXFDYRTAARDAIIK 651
            AS  S S     +   +RC++C+++VGLTGFKCRCG  +C  HRY+++H C FDY+++ R+ I K
Sbjct:  159 ASYSSSSPATGEQPEANRCATCRRKVGLTGFKCRCGGTFCGGHRYADEHGCGFDYKSSGRELIAK 223          
BLAST of FC920266 vs. ExPASy Swiss-Prot
Match: ZFAN3_RAT (AN1-type zinc finger protein 3 OS=Rattus norvegicus GN=Zfand3 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.817e-13
Identity = 54/197 (27.41%), Postives = 77/197 (39.09%), Query Frame = 1
Query:  205 PPEGPILCINNCGFFGSVATMNMCSKCYKDIMLKQDQAKLAASSIGS----IVNETSSSNGSESVAAATVDVQASSVEPKIISVQPS----------------------CASELSESVEAKPKEGPS--------------------RCSSCKKRVGLTGFK---CRCGNLYCVSHRYSEQHNCXFDYRTAARDAII 648
            PP  P      CGF+GS  TMN+CSKC+ D   KQ       S+  S       ET+S N + SV   T+     S+  ++    PS                      C ++     EA P + P                     RC  C+ ++ L   +   CRCG ++C+ HR  EQH+C FD+    R+  I
Sbjct:   15 PPRCP------CGFWGSSKTMNLCSKCFADFQKKQPDDDSTPSTSNSQSDLFSEETTSDNNNTSVTTPTLSPSQQSLPTELNVTSPSEEECGPCTDTAHVSLITPTKRSCGADSQSESEASPVKRPRLVENPERPEESGRSKQKSRRRCFQCQTKLELVQQELGSCRCGYVFCMLHRLPEQHDCTFDHMGRGREEAI 205          
BLAST of FC920266 vs. ExPASy Swiss-Prot
Match: ZFAN3_MOUSE (AN1-type zinc finger protein 3 OS=Mus musculus GN=Zfand3 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.679e-13
Identity = 54/197 (27.41%), Postives = 77/197 (39.09%), Query Frame = 1
Query:  205 PPEGPILCINNCGFFGSVATMNMCSKCYKDIMLKQDQAKLAASSIGS----IVNETSSSNGSESVAAATVDVQASSVEPKIISVQPS----------------------CASELSESVEAKPKEGPS--------------------RCSSCKKRVGLTGFK---CRCGNLYCVSHRYSEQHNCXFDYRTAARDAII 648
            PP  P      CGF+GS  TMN+CSKC+ D   KQ       S+  S       ET+S N + SV   T+     S+  ++    PS                      C ++     EA P + P                     RC  C+ ++ L   +   CRCG ++C+ HR  EQH+C FD+    R+  I
Sbjct:   15 PPRCP------CGFWGSSKTMNLCSKCFADFQKKQPDDDSTPSTSNSQSDLFSEETTSDNNNTSVTTPTLSPSQQSLPTELNVTSPSTEECGPCTDTAHVSLITPTKRSCGADSQSENEASPVKRPRLVENPERPEESGRSKQKSRRRCFQCQTKLELVQQELGSCRCGYVFCMLHRLPEQHDCTFDHMGRGREEAI 205          
BLAST of FC920266 vs. ExPASy Swiss-Prot
Match: ZFAN3_HUMAN (AN1-type zinc finger protein 3 OS=Homo sapiens GN=ZFAND3 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.276e-13
Identity = 53/197 (26.90%), Postives = 77/197 (39.09%), Query Frame = 1
Query:  205 PPEGPILCINNCGFFGSVATMNMCSKCYKDIMLKQDQAKLAASSIGS----IVNETSSSNGSESVAAATVDVQASSVEPKIISVQP----------------------SCASELSESVEAKPKEGP--------------------SRCSSCKKRVGLTGFK---CRCGNLYCVSHRYSEQHNCXFDYRTAARDAII 648
            PP  P      CGF+GS  TMN+CSKC+ D   KQ     A S+  S       ET+S N + S+   T+      +  ++    P                      SC ++     EA P + P                     RC  C+ ++ L   +   CRCG ++C+ HR  EQH+C FD+    R+  I
Sbjct:   15 PPRCP------CGFWGSSKTMNLCSKCFADFQKKQPDDDSAPSTSNSQSDLFSEETTSDNNNTSITTPTLSPSQQPLPTELNVTSPSKEECGPCTDTAHVSLITPTKRSCGTDSQSENEASPVKRPRLLENTERSEETSRSKQKSRRRCFQCQTKLELVQQELGSCRCGYVFCMLHRLPEQHDCTFDHMGRGREEAI 205          
BLAST of FC920266 vs. ExPASy Swiss-Prot
Match: ZFAN3_XENLA (AN1-type zinc finger protein 3 homolog OS=Xenopus laevis GN=zfand3 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.398e-12
Identity = 56/196 (28.57%), Postives = 79/196 (40.31%), Query Frame = 1
Query:  205 PPEGPILCINNCGFFGSVATMNMCSKCYKDIMLKQDQAKLAASSIGS----IVNETSSSNGSESVAAATVD-VQASSVEPKIIS--------------------VQPSCASELSESVEAKPKEGP--------------------SRCSSCKKRVGLTGFK---CRCGNLYCVSHRYSEQHNCXFDYRTAARDAII 648
            PP  P      CGF+GS  TMN+CSKC+ D   KQ     A S+  S      +ET S NG+ S+   TV+  Q    E  + S                     + SC S+     +  P + P                     RC  C+ ++ L   +   CRCG ++C+ HR  EQH+C FD+    R+  I
Sbjct:   15 PPRCP------CGFWGSSKTMNLCSKCFADFQKKQPDEDTAPSTSSSQSDLFPSETDSDNGNTSIPTPTVNPTQQLPTELNVDSPSKEDCGPCTDSAHVSLTTPSKRSCDSDSQSEDDTSPMKRPRLLDSGDRPDNSSRSKQKSRRRCFRCQIKLELVQQELGSCRCGYVFCMLHRLPEQHDCTFDHMGRGREEAI 204          
The following BLAST results are available for this feature:
BLAST of FC920266 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
SAP10_ORYSJ1.035e-1531.51Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP15_ORYSJ1.951e-1462.00Zinc finger AN1 domain-containing stress-associate... [more]
SAP14_ORYSJ1.652e-1346.15Zinc finger AN1 domain-containing stress-associate... [more]
ZFAN3_RAT2.817e-1327.41AN1-type zinc finger protein 3 OS=Rattus norvegicu... [more]
ZFAN3_MOUSE3.679e-1327.41AN1-type zinc finger protein 3 OS=Mus musculus GN=... [more]
ZFAN3_HUMAN6.276e-1326.90AN1-type zinc finger protein 3 OS=Homo sapiens GN=... [more]
ZFAN3_XENLA1.398e-1228.57AN1-type zinc finger protein 3 homolog OS=Xenopus ... [more]

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Properties
Property NameValue
Genbank descriptionC32006B01EF RVDevelop1 Citrus clementina cDNA clone C32006B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920266 ID=FC920266; Name=FC920266; organism=Citrus clementina; type=EST; length=668bp
GGACACCCGGAAAGGGAAACGAGGACGTCTCTAATCGGTTTTTGCCTGCT
CTCTCCCCGTAGGCCGATCTGGTCCATTTAATTTTAGGGGCTCATTGGAT
GCTGGTTTGAGCTCGGGGATCGGCTTAAGGGATTCATTGCTGTTTCTTCT
GTTGCTCGCAGGGGTGGTGAAAACATGGACCATGATGAGACTGGATGCCA
AGCTCCTCCTGAGGGCCCTATCTTGTGCATCAACAATTGTGGTTTCTTTG
GAAGTGTGGCTACTATGAATATGTGTTCCAAATGCTACAAGGATATAATG
CTGAAACAGGATCAAGCTAAGCTTGCTGCTTCATCTATTGGAAGCATTGT
GAATGAAACGTCAAGCAGCAATGGAAGTGAATCTGTTGCTGCTGCCACTG
TTGATGTGCAAGCTAGTTCAGTGGAGCCAAAAATCATCTCTGTGCAGCCA
TCATGTGCTTCAGAATTGAGCGAGAGTGTGGAGGCAAAGCCGAAGGAGGG
TCCCAGCCGGTGCAGCAGTTGCAAGAAGCGTGTTGGTTTAACAGGATTCA
AATGTCGCTGTGGTAACTTATACTGTGTGTCACATCGCTATTCGGAACAA
CATAACTGCNCCTTTGACTACCGCACTGCTGCTAGGGATGCTATAATTAA
AGCAACCCTGTGATCAGG
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