FC920271

Overview
NameFC920271
Unique NameFC920271
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length608
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11919 contig Ccv1_Contig11919:329..936. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920271 vs. ExPASy Swiss-Prot
Match: DFRA_SOLLC (Dihydroflavonol-4-reductase OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.172e-28
Identity = 80/191 (41.88%), Postives = 116/191 (60.73%), Query Frame = 2
Query:   53 P*KEVVCVTGAYGFIGTWVVRTLLEKGYTNIHPAIFPGTD---ASHLFSLPGATKLNVRVYEANILDNEAISRAIEGCKGVFHLASPNTLDDPKDPEKELLIPAVQGTLNVLEA-AKKFGVRRVVLTSSISSIVPNPNWPQGKVIDETSWTDLDFCKSHKI--W-YSMSKTLAEKAAWEFAEKNGTDVVAI 604
            P    V VTG  GFIG+W+V  LLE+GY N+H  +    +     HL  LP A   N+ +++A++    +   AI+GC+GVFH+A+P   +  KDPE E++ P V+G L+++E+ AK   V+R+V TSS  ++  +    Q    DETSW+DLDF  + K+  W Y +SK LAEKAA E A KN  D ++I
Sbjct:   15 PKTTTVWVTGGAGFIGSWLVMRLLERGY-NVHATVRDPENQKKVKHLLELPKA-DTNLTLWKADLAVEGSFDEAIQGCQGVFHVATPMDFES-KDPENEVIKPTVRGMLSIIESCAKANTVKRLVFTSSAGTL--DVQEDQKLFYDETSWSDLDFIYAKKMTGWMYFVSKILAEKAAMEEARKNNIDFISI 200          
BLAST of FC920271 vs. ExPASy Swiss-Prot
Match: DFRA_ANTMA (Dihydroflavonol-4-reductase OS=Antirrhinum majus GN=DFRA PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.167e-26
Identity = 75/190 (39.47%), Postives = 110/190 (57.89%), Query Frame = 2
Query:   53 P*KEVVCVTGAYGFIGTWVVRTLLEKGYTNIHPAIFPGT--DASHLFSLPGATKLNVRVYEANILDNEAISRAIEGCKGVFHLASPNTLDDPKDPEKELLIPAVQGTLNVLEA-AKKFGVRRVVLTSSISSIVPNPNWPQGKVIDETSWTDLDFCKSHKI--W-YSMSKTLAEKAAWEFAEKNGTDVVAI 604
            P    VCVTGA GFIG+W+V  LLE+GYT       PG      HL  LP A   N+ +++A++    +   AI+GC+GVFHLA+    D   DPE E++ P + G LN++++  +   V++ + T+S  ++  N    Q  V DET  +D+DF  S K+  W Y +SK LAEKA  E A++N  D ++I
Sbjct:   15 PSSTTVCVTGAAGFIGSWLVMRLLERGYTVRATVRDPGNMKKVKHLIELPKA-DTNLTLWKADMTVEGSFDEAIQGCEGVFHLATSMEFDS-VDPENEVIKPTIDGMLNIIKSCVQAKTVKKFIFTTSGGTV--NVEEHQKPVYDETDSSDMDFINSKKMTGWMYFVSKILAEKAGMEAAKENNIDFISI 200          
BLAST of FC920271 vs. ExPASy Swiss-Prot
Match: DFRA_MEDSA (Dihydroflavonol-4-reductase (Fragment) OS=Medicago sativa GN=DFR1 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 8.689e-24
Identity = 66/175 (37.71%), Postives = 107/175 (61.14%), Query Frame = 2
Query:   98 GTWVVRTLLEKGYTNIHPAIFPGT--DASHLFSLPGATKLNVRVYEANILDNEAISRAIEGCKGVFHLASPNTLDDPKDPEKELLIPAVQGTLNVLEAAKKFG-VRRVVLTSSISSIVPNPNWPQGKVIDETSWTDLDFCKSHKI--W-YSMSKTLAEKAAWEFAEKNGTDVVAI 604
            G+W+V  L+E GY        P      S L  LPGA K  + +++A++ +  +   AI+GC GVFH+A+P   +  KDPE E++ P ++G L++++A  K   VRR++ TSS  ++  N    Q  + DE+ W+D++FC+  K+  W Y +SKTLAE+ AW+FA+++  DV+ I
Sbjct:    1 GSWLVMRLMEPGYMVRATVRDPENLKKVSPLLELPGA-KSKLSIWKADLGEEGSFDEAIKGCTGVFHVATPMDFES-KDPENEMIKPTIKGVLDIMKACLKAKTVRRLIYTSSAGTL--NVTEDQKPLWDESCWSDVEFCRRVKMTGWMYFVSKTLAEQEAWKFAKEHKMDVITI 171          
BLAST of FC920271 vs. ExPASy Swiss-Prot
Match: BAN_ARATH (Leucoanthocyanidin reductase OS=Arabidopsis thaliana GN=BAN PE=1 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 3.302e-23
Identity = 59/183 (32.24%), Postives = 111/183 (60.66%), Query Frame = 2
Query:   71 CVTGAYGFIGTWVVRTLLEKGYTNIHPAIFPGTDASHLFSLPGATKL-NVRVYEANILDNEAISRAIEGCKGVFHLASPNTLDDPKDPEKELLIPAVQGTLNVLEAA-KKFGVRRVVLTSSISSIVPNPNWPQGKVIDETSWTDLDFCKSHKIW---YSMSKTLAEKAAWEFAEKNGTDVVAI 604
            CV G  G + + +++ LL+ GY  ++  +    +   +  L    +L ++++++A++ D ++   +  GC+ +FH+A+P      +DPEK+++ PA+QG +NVL++  K   V+RV+ TSS +++  N     G V++E +WTD++F    K +   Y +SK LAEK AWEFA++N  ++V +
Sbjct:   14 CVIGGTGNLASILIKHLLQSGY-KVNTTVRDPENEKKIAHLRKLQELGDLKIFKADLTDEDSFESSFSGCEYIFHVATPINFKS-EDPEKDMIKPAIQGVINVLKSCLKSKSVKRVIYTSSAAAVSINNLSGTGIVMNEENWTDVEFLTEEKPFNWGYPISKVLAEKTAWEFAKENKINLVTV 194          
BLAST of FC920271 vs. ExPASy Swiss-Prot
Match: ALD2_SPOSA (Aldehyde reductase 2 OS=Sporobolomyces salmonicolor PE=1 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 2.993e-16
Identity = 74/197 (37.56%), Postives = 102/197 (51.78%), Query Frame = 2
Query:   53 P*KEVVCVTGAYGFIGTWVVRTLLEKGYTNIHPAIFPGTDASHLFSL--------PGATKLNVRVYEANILDNEAISRAIEGCKGVFHLASPNTLDDPKDPEKELLIPAVQGTLNVLEAAKKF-GVRRVVLTSS-ISSIVPNPNWPQGKVIDETSWT--DLDFCKS-------HKIW-YSMSKTLAEKAAWEFAEKN 583
            P   +V VTGA GF+ + VV  LLE GY     A      AS L +L        PG  +    V E ++L   A    I+G  GV H+AS  +  +  D   E++ PA+ GTLN L AA     V+R VLTSS +S+++P PN  +G  +DE SW    +D  K+         +W Y+ SKT AE AAW+F ++N
Sbjct:   10 PEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTA----RSASKLANLQKRWDAKYPG--RFETAVVE-DMLKQGAYDEVIKGAAGVAHIASVVSFSNKYD---EVVTPAIGGTLNALRAAAATPSVKRFVLTSSTVSALIPKPN-VEGIYLDEKSWNLESIDKAKTLPESDPQKSLWVYAASKTEAELAAWKFMDEN 195          
BLAST of FC920271 vs. ExPASy Swiss-Prot
Match: YGP7_YEAST (Putative uncharacterized oxidoreductase YGL157W OS=Saccharomyces cerevisiae GN=YGL157W PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.309e-15
Identity = 65/186 (34.95%), Postives = 95/186 (51.08%), Query Frame = 2
Query:   68 VCVTGAYGFIGTWVVRTLLEKGYTNIHPAIFPGTDASHLFSLPGATKLNVRVYEANILDN---EAISRAIEGCKGVFHLASPNTLDDPKDPEKELLIPAVQGTLNVLEAAKKFG---VRRVVLTSSISSIVPNPNWPQGK-VIDETSWT--DLDFCKSHKI-WYSMSKTLAEKAAWEFAEKNGTDV 595
            V V+GA GFI   ++  LL+ GYT I        +   L       KL++ + E     N   E   +  +  K V H ASP   +     EK+LL PAV GT ++LEA KK+    V +V++TSS +++V   +  +G  VI E SW     D C+++ +  Y  SK  AEK AWEF ++N + V
Sbjct:    7 VFVSGATGFIALHIMNDLLKAGYTVIGSGRSQEKNDGLLKKFNNNPKLSMEIVEDIAAPNAFDEVFKKHGKEIKIVLHTASPFHFETTNF-EKDLLTPAVNGTKSILEAIKKYAADTVEKVIVTSSTAALVTPTDMNKGDLVITEESWNKDTWDSCQANAVAAYCGSKKFAEKTAWEFLKENKSSV 191          
BLAST of FC920271 vs. ExPASy Swiss-Prot
Match: YGD9_YEAST (Putative uncharacterized oxidoreductase YGL039W OS=Saccharomyces cerevisiae GN=YGL039W PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.322e-15
Identity = 64/189 (33.86%), Postives = 96/189 (50.79%), Query Frame = 2
Query:   59 KEVVCVTGAYGFIGTWVVRTLLEKGYTNIHPAIFPGTDASHLFSLPGATKLNVRVYEANILDN---EAISRAIEGCKGVFHLASPNTLDDPKDPEKELLIPAVQGTLNVLEAAKKFG---VRRVVLTSSISSIV-PNPNWPQGKVIDETSWT--DLDFCKSHKI-WYSMSKTLAEKAAWEFAEKNGTDV 595
            K VV V+GA GFI   VV  LL+ GY  I        +   L        L++ + E     N   +   +  +  K V H+ASP   +   D EK+LLIPAV GT ++LEA K +    V +VV+TSS++++  P        V++E SW     + C+++ +  Y  SK  AEK AW+F E+N + +
Sbjct:    5 KTVVFVSGATGFIALHVVDDLLKTGYKVIGSGRSQEKNDGLLKKFKSNPNLSMEIVEDIAAPNAFDKVFQKHGKEIKVVLHIASPVHFNTT-DFEKDLLIPAVNGTKSILEAIKNYAADTVEKVVITSSVAALASPGDMKDTSFVVNEESWNKDTWESCQANAVSAYCGSKKFAEKTAWDFLEENQSSI 192          
BLAST of FC920271 vs. ExPASy Swiss-Prot
Match: YD541_YEAST (Putative uncharacterized oxidoreductase YDR541C OS=Saccharomyces cerevisiae GN=YDR541C PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.901e-13
Identity = 63/183 (34.43%), Postives = 89/183 (48.63%), Query Frame = 2
Query:   68 VCVTGAYGFIGTWVVRTLLEKGYTNIHPAIFPGTDASHLFSLPGATKLNVRVY----EANILDNEAISRAIEGCKGVFHLASPNTLDDPKDPEKELLIPAVQGTLNVLEAAKKFG---VRRVVLTSSISSIVPNPNWPQGKVI-DETSWTDL--DFCKSHKI-WYSMSKTLAEKAAWEFAEKN 583
            V V+GA GFI   ++  LL++ Y  I        +A  L        L + +       N  D     R  E  + V H ASP   D   + EK+LLIPA++GT N+L + KK+    V RVV+TSS ++I+         V+  E SW +   + C+   I  Y  SK  AEKAAWEF ++N
Sbjct:    5 VLVSGASGFIALHILSQLLKQDYKVIGTVRSHEKEAKLLRQFQHNPNLTLEIVPDISHPNAFDKVLQKRGRE-IRYVLHTASPFHYDTT-EYEKDLLIPALEGTKNILNSIKKYAADTVERVVVTSSCTAIITLAKMDDPSVVFTEESWNEATWESCQIDGINAYFASKKFAEKAAWEFTKEN 185          
BLAST of FC920271 vs. ExPASy Swiss-Prot
Match: YKJ7_SCHPO (Putative uncharacterized oxidoreductase C513.07 OS=Schizosaccharomyces pombe GN=SPAC513.07 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.177e-12
Identity = 56/181 (30.94%), Postives = 92/181 (50.83%), Query Frame = 2
Query:   62 EVVCVTGAYGFIGTWVVRTLLEKGYTNIHPAIFPGTDASHLFSL-PGATKLNVRVYEANILDNEAISRAIEGCKGVFHLASPNTLDDPKDPEKELLIPAVQGTLNVLEAAKKF-GVRRVVLTSSISSIVPNPNWP-QGKVIDETSWTDLDF-----CKSHKIWYSMSKTLAEKAAWEFAEK 580
            ++V VTG  GFIG  V   LL+ GY  +   +     A  L  L PG       V   ++  + A    ++  + + H+ASP  +++  D + +LL PAV+GTL +LEAA+    ++R+V+TSS +++      P   KV  E  W  + +       +  + Y  SK LAE+AA E+ ++
Sbjct:    4 KLVLVTGVTGFIGAHVAEQLLQAGY-RVRGTVRSMEKADELIRLNPGLKDKIEFVIVKDVSASNAFDGVLKDVELICHIASPFFVENVTDNKSQLLDPAVKGTLGILEAAQGVKSIKRIVITSSFAAVGNFQIDPHNNKVYTEKDWNPITYEEALTTDNGIVAYCASKKLAEEAAREYVKE 183          
BLAST of FC920271 vs. ExPASy Swiss-Prot
Match: GRE2_YEAST (NADPH-dependent methylglyoxal reductase GRE2 OS=Saccharomyces cerevisiae GN=GRE2 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.301e-11
Identity = 64/187 (34.22%), Postives = 92/187 (49.20%), Query Frame = 2
Query:   68 VCVTGAYGFIGTWVVRTLLEKGYTNIHPAIFPGTDASHLFSLPGATKLNVRVY-EANILD--NEAISRAIEGCKGVFHLASPNTLDDPKDPEKELLIPAVQGTLNVLEAAKKF---GVRRVVLTSSISSI--VPNPNWPQGKVIDETSWTDL--DFCKSHKI-WYSMSKTLAEKAAWEFAEKNGTDV 595
            V V+GA GFI   +V  LL++ Y  I  A       +   +     K ++ V  + + LD  +    +  +  K V H ASP   D   D E++LLIPAV G   +L + KK+    V RVVLTSS +++  +   N  +    +E SW     + C+S  +  Y  SK  AEKAAWEF E+N   V
Sbjct:    3 VFVSGANGFIAQHIVDLLLKEDYKVIGSARSQEKAENLTEAFGNNPKFSMEVVPDISKLDAFDHVFQKHGKDIKIVLHTASPFCFDIT-DSERDLLIPAVNGVKGILHSIKKYAADSVERVVLTSSYAAVFDMAKEN-DKSLTFNEESWNPATWESCQSDPVNAYCGSKKFAEKAAWEFLEENRDSV 187          
The following BLAST results are available for this feature:
BLAST of FC920271 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
DFRA_SOLLC1.172e-2841.88Dihydroflavonol-4-reductase OS=Solanum lycopersicu... [more]
DFRA_ANTMA4.167e-2639.47Dihydroflavonol-4-reductase OS=Antirrhinum majus G... [more]
DFRA_MEDSA8.689e-2437.71Dihydroflavonol-4-reductase (Fragment) OS=Medicago... [more]
BAN_ARATH3.302e-2332.24Leucoanthocyanidin reductase OS=Arabidopsis thalia... [more]
ALD2_SPOSA2.993e-1637.56Aldehyde reductase 2 OS=Sporobolomyces salmonicolo... [more]
YGP7_YEAST3.309e-1534.95Putative uncharacterized oxidoreductase YGL157W OS... [more]
YGD9_YEAST4.322e-1533.86Putative uncharacterized oxidoreductase YGL039W OS... [more]
YD541_YEAST6.901e-1334.43Putative uncharacterized oxidoreductase YDR541C OS... [more]
YKJ7_SCHPO1.177e-1230.94Putative uncharacterized oxidoreductase C513.07 OS... [more]
GRE2_YEAST1.301e-1134.22NADPH-dependent methylglyoxal reductase GRE2 OS=Sa... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32006B06EF RVDevelop1 Citrus clementina cDNA clone C32006B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920271 ID=FC920271; Name=FC920271; organism=Citrus clementina; type=EST; length=608bp
CGGGACACTTCACAAAATCCTCACATACTTAAAGACAAAAAGGATGAACG
GGCCATAAAAGGAAGTAGTTTGCGTGACTGGAGCCTACGGGTTCATCGGA
ACATGGGTGGTCCGAACCCTTCTAGAAAAAGGCTACACCAACATTCACCC
TGCCATCTTTCCCGGCACTGACGCATCCCACTTGTTCAGCCTCCCAGGCG
CCACCAAGCTCAACGTCCGTGTTTACGAGGCCAATATCTTAGACAACGAA
GCAATTTCCAGGGCCATCGAGGGTTGCAAGGGGGTCTTCCATCTTGCCTC
TCCTAACACCCTGGATGATCCCAAGGACCCCGAAAAGGAGCTGCTCATTC
CTGCTGTTCAAGGCACCCTCAATGTCTTAGAGGCTGCCAAGAAGTTTGGT
GTCAGGCGTGTGGTGCTCACCAGCTCCATTTCTTCCATTGTGCCTAATCC
CAATTGGCCTCAAGGCAAGGTCATTGATGAAACTTCTTGGACCGACCTTG
ACTTTTGCAAGTCTCACAAGATATGGTATTCAATGTCAAAGACACTAGCA
GAAAAAGCAGCATGGGAATTTGCAGAGAAGAATGGAACGGATGTGGTGGC
AATCCATC
back to top