FC920278

Overview
NameFC920278
Unique NameFC920278
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length731
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920278 vs. ExPASy Swiss-Prot
Match: CADH5_ORYSJ (Putative cinnamyl alcohol dehydrogenase 5 OS=Oryza sativa subsp. japonica GN=CAD5 PE=3 SV=2)

HSP 1 Score: 272.707 bits (696), Expect = 1.417e-72
Identity = 128/211 (60.66%), Postives = 150/211 (71.09%), Query Frame = 2
Query:   62 PQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPXXXXXXXXXXXXXXXXXXIGKAFGLKVTVISTSPKKR 694
            P  A G AARD +G  SP   SRR TG DDV IKIL+CGICHSDLH  +NEW    YP+VPGHEI G VT+ G NV+KFK GDKVGVG +V SC  C+SC QGLEN+CP +I TYNS+D+DGT TYGGYS ++VV + +V+RFP+ MPLD GAPLLCAGITVYSPMKY+G+  P                    KAFG+ VTVIS+SP KR
Sbjct:    3 PTAAAGLAARDASGHLSPLTISRRSTGDDDVVIKILYCGICHSDLHSIKNEWKNATYPLVPGHEIAGVVTEAGKNVTKFKGGDKVGVGCMVNSCHSCDSCNQGLENHCPGVIFTYNSVDKDGTVTYGGYSSMVVVHERFVVRFPEAMPLDKGAPLLCAGITVYSPMKYHGLNVPSKHVGVLGLGGLGHVAVKFAKAFGMTVTVISSSPGKR 213          
BLAST of FC920278 vs. ExPASy Swiss-Prot
Match: CADH8_ARATH (Cinnamyl alcohol dehydrogenase 8 OS=Arabidopsis thaliana GN=CAD8 PE=1 SV=1)

HSP 1 Score: 265.774 bits (678), Expect = 1.732e-70
Identity = 125/210 (59.52%), Postives = 151/210 (71.90%), Query Frame = 2
Query:   65 QKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPXXXXXXXXXXXXXXXXXXIGKAFGLKVTVISTSPKKR 694
            ++A G AA+DN+G  SPF F+RRETG  DV  K+LFCGICHSDLH  +NEWG++ YP+VPGHEIVG VT+VG  V+KFK G+KVGVG LV+SC  C+SC +G+ENYCP  I TY     D T TYGGYSD +V ++ +V+R PDN+PLDA APLLCAGITVYSPMKY+G+ +P                    KA G KVTVISTS KKR
Sbjct:    7 KEAFGLAAKDNSGVLSPFSFTRRETGEKDVRFKVLFCGICHSDLHMVKNEWGMSTYPLVPGHEIVGVVTEVGAKVTKFKTGEKVGVGCLVSSCGSCDSCTEGMENYCPKSIQTYGFPYYDNTITYGGYSDHMVCEEGFVIRIPDNLPLDAAAPLLCAGITVYSPMKYHGLDKPGMHIGVVGLGGLGHVGVKFAKAMGTKVTVISTSEKKR 216          
BLAST of FC920278 vs. ExPASy Swiss-Prot
Match: CAD8B_ORYSJ (Probable cinnamyl alcohol dehydrogenase 8B OS=Oryza sativa subsp. japonica GN=CAD8B PE=3 SV=2)

HSP 1 Score: 263.077 bits (671), Expect = 1.123e-69
Identity = 124/225 (55.11%), Postives = 152/225 (67.56%), Query Frame = 2
Query:   20 RERESMAKSPETEQPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPXXXXXXXXXXXXXXXXXXIGKAFGLKVTVISTSPKKR 694
            R R S A+    E  + A+GWAARD++G  SP++FSRR    DDVTIK+L+CGICH+DLH  +N+WG   YP+VPGHEIVG VT VG  V+KFK GD VGVG  V SC+ C+SC +G ENYCP M++T N  D  G  T GG+SD IVV++HYVLR P  +PLD  APLLCAG+TVYSPM  +G+  P                    KAFG++VTVISTSP KR
Sbjct:   66 RARASAAEQGMEEHGKAAVGWAARDDSGVLSPYNFSRRAQKDDDVTIKVLYCGICHTDLHVVKNDWGNAMYPVVPGHEIVGVVTGVGAGVTKFKAGDTVGVGFFVGSCRTCDSCGKGYENYCPTMVITSNGKDYGGAATQGGFSDAIVVNEHYVLRVPAGLPLDGAAPLLCAGVTVYSPMVIHGLNAPGKHVGVVGLGGLGHVAVKFAKAFGMRVTVISTSPGKR 290          
BLAST of FC920278 vs. ExPASy Swiss-Prot
Match: CADH6_ARATH (Probable cinnamyl alcohol dehydrogenase 6 OS=Arabidopsis thaliana GN=CAD6 PE=2 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 1.241e-68
Identity = 119/216 (55.09%), Postives = 152/216 (70.37%), Query Frame = 2
Query:   44 SPETEQPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPXXXXXXXXXXXXXXXXXXIGKAFGLKVTVISTSPKK 691
            S E EQ  +A GWAARD++G  SPF FSRR+TG ++V +K+L+CGICHSDLHC +NEW  + YP+VPGHEI+G V+++GN VSKF  GDKVGVG +V SC+ CESC++  ENYC   I TYN +  DGT  YGGYSD IVVD+ Y ++ P  +PL + APLLCAGI++YSPMKY+G+T P                    KAFG KVTV+S++  K
Sbjct:    5 SGEKEQSVEAFGWAARDSSGHLSPFVFSRRKTGEEEVRVKVLYCGICHSDLHCLKNEWHSSIYPLVPGHEIIGEVSEIGNKVSKFNLGDKVGVGCIVDSCRTCESCREDQENYCTKAIATYNGVHHDGTINYGGYSDHIVVDERYAVKIPHTLPLVSAAPLLCAGISMYSPMKYFGLTGPDKHVGIVGLGGLGHIGVRFAKAFGTKVTVVSSTTGK 220          
BLAST of FC920278 vs. ExPASy Swiss-Prot
Match: CAD8C_ORYSJ (Probable cinnamyl alcohol dehydrogenase 8C OS=Oryza sativa subsp. japonica GN=CAD8C PE=2 SV=2)

HSP 1 Score: 259.61 bits (662), Expect = 1.241e-68
Identity = 125/228 (54.82%), Postives = 152/228 (66.67%), Query Frame = 2
Query:   20 RERESMAKSPETEQPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRD---GTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPXXXXXXXXXXXXXXXXXXIGKAFGLKVTVISTSPKKR 694
            R R S A+    E  + A+GWAARD++G  SP++FSRR    DDVTIK+L+CGICH+DLH  +N+WG   YP+VPGHEIVG VT VG  V+KFK GD VGVG  VASC+ CE C  G ENYC  M+ T N +D D   G  T GG+SD IVV++HYVLR P  +PLD+ APLLCAG+TVYSPM  +G+  P                    KAFG++VTVISTSP KR
Sbjct:   66 RARASAAEQGMEEHGKAAVGWAARDDSGVLSPYNFSRRAQKDDDVTIKVLYCGICHTDLHIVKNDWGNAMYPVVPGHEIVGVVTGVGAGVTKFKAGDTVGVGYFVASCRGCECCGNGYENYCAKMVTTCNGVDHDHGGGAATQGGFSDAIVVNEHYVLRVPAGLPLDSAAPLLCAGVTVYSPMVIHGLNAPGKHVGVVGLGGLGHVAVKFAKAFGMRVTVISTSPGKR 293          
BLAST of FC920278 vs. ExPASy Swiss-Prot
Match: CADH7_ORYSJ (Cinnamyl alcohol dehydrogenase 7 OS=Oryza sativa subsp. japonica GN=CAD7 PE=2 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 6.812e-67
Identity = 119/227 (52.42%), Postives = 157/227 (69.16%), Query Frame = 2
Query:   41 KSPETEQPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCP-NMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDN--------MPLDAGAPLLCAGITVYSPMKYYGMTEPXXXXXXXXXXXXXXXXXXIGKAFGLKVTVISTSPKKR 694
            ++P  +  +KA+G AA D++G  +P   SRR+TG DDV IK+L+CGICHSDLH  +NEW    YP+V GHEI G VT+VG NV++FK GD+VGVG +V +C  CESC+ G ENYC   ++ TYNS+DRDGT+TYGGYSD +VV Q +V+RFP +        +PLD+GAPLLCAG+TVY+PM+ +G+ E                     +AFG++VTVISTSP KR
Sbjct:   13 QAPPPQHTRKAVGLAAHDDSGHLTPIRISRRKTGDDDVAIKVLYCGICHSDLHTIKNEWRNAVYPVVAGHEITGVVTEVGKNVARFKAGDEVGVGCMVNTCGGCESCRDGCENYCSGGVVFTYNSVDRDGTRTYGGYSDAVVVSQRFVVRFPSSAGGGAGAALPLDSGAPLLCAGVTVYAPMRQHGLCEAGKHVGVVGLGGLGHVAVKFARAFGMRVTVISTSPVKR 239          
BLAST of FC920278 vs. ExPASy Swiss-Prot
Match: CADH7_ARATH (Cinnamyl alcohol dehydrogenase 7 OS=Arabidopsis thaliana GN=CAD7 PE=1 SV=2)

HSP 1 Score: 252.677 bits (644), Expect = 1.517e-66
Identity = 118/210 (56.19%), Postives = 145/210 (69.05%), Query Frame = 2
Query:   65 QKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPXXXXXXXXXXXXXXXXXXIGKAFGLKVTVISTSPKKR 694
            ++A G AA+D +G  SPF FSRR TG  DV  K+LFCGICH+DL  A+NEWG+T YP+VPGHEIVG VT+VG  V KF  GDKVGVG +  SC+ C+SC  G ENYCP MILT  + + D T T+GGYSD +V  + +++R PDN+PLD  APLLCAG+TVYSPMKY+G+ +P                    KA G KVTVISTS +KR
Sbjct:    7 KEAFGLAAKDESGILSPFSFSRRATGEKDVRFKVLFCGICHTDLSMAKNEWGLTTYPLVPGHEIVGVVTEVGAKVKKFNAGDKVGVGYMAGSCRSCDSCNDGDENYCPKMILTSGAKNFDDTMTHGGYSDHMVCAEDFIIRIPDNLPLDGAAPLLCAGVTVYSPMKYHGLDKPGMHIGVVGLGGLGHVAVKFAKAMGTKVTVISTSERKR 216          
BLAST of FC920278 vs. ExPASy Swiss-Prot
Match: CAD8D_ORYSJ (Probable cinnamyl alcohol dehydrogenase 8D OS=Oryza sativa subsp. japonica GN=CAD8D PE=2 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 1.982e-66
Identity = 119/208 (57.21%), Postives = 143/208 (68.75%), Query Frame = 2
Query:   71 AIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPXXXXXXXXXXXXXXXXXXIGKAFGLKVTVISTSPKKR 694
            A+GWAARD +G  SPF F+RR    DDVTIK+L+CGICH+DLH  +NEWG   YP+VPGHEIVG VT VG  V+KFK GD VGVG  V SC+ C+SC +G ENYCP M++T N  D  G  T GG+SD++VV Q YV+R P ++P D  APLLCAG+TVYSPM  YG+  P                   GKAFG+KVTVIS+SP KR
Sbjct:    8 ALGWAARDTSGHLSPFSFTRRVQQEDDVTIKVLYCGICHTDLHIIKNEWGNAMYPVVPGHEIVGVVTGVGAGVTKFKAGDTVGVGYFVDSCRACDSCGKGYENYCPTMVITSNGTDYGGATTQGGFSDVMVVRQDYVVRVPASLPPDGAAPLLCAGVTVYSPMVEYGLNGPGKHLGVVGLGGLGHLGVKFGKAFGMKVTVISSSPAKR 215          
BLAST of FC920278 vs. ExPASy Swiss-Prot
Match: CADH6_ORYSJ (Probable cinnamyl alcohol dehydrogenase 6 OS=Oryza sativa subsp. japonica GN=CAD6 PE=2 SV=2)

HSP 1 Score: 248.825 bits (634), Expect = 2.191e-65
Identity = 120/219 (54.79%), Postives = 144/219 (65.75%), Query Frame = 2
Query:   65 QKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTE---PXXXXXXXXXXXXXXXXXXIGKAFGLKVTVISTSPKKRVKRSAN 712
            Q   GWAA D +G   PF F RRE G DDVTIK+ +CG+CH+DLH   N+WG+T YP+VPGHEI G VTKVG NV+ FK GD+VGVG + ASC  CE C++  ENYC  + LTYN I  DG+ TYGGYS ++V  + +V+R PD +PLDA APLLCAGITVYSPMK +GM +                       GKAFGL VTVISTSP K  +   N
Sbjct:    9 QTVSGWAAMDESGKIVPFVFKRRENGVDDVTIKVKYCGMCHTDLHFIHNDWGITMYPVVPGHEITGVVTKVGTNVAGFKVGDRVGVGCIAASCLDCEHCRRSEENYCDKVALTYNGIFWDGSITYGGYSGMLVAHKRFVVRIPDTLPLDAAAPLLCAGITVYSPMKQHGMLQADAAGRRLGVVGLGGLGHVAVKFGKAFGLHVTVISTSPAKEREAREN 227          
BLAST of FC920278 vs. ExPASy Swiss-Prot
Match: CAD8A_ORYSJ (Probable cinnamyl alcohol dehydrogenase 8A OS=Oryza sativa subsp. japonica GN=CAD8A PE=2 SV=1)

HSP 1 Score: 248.825 bits (634), Expect = 2.191e-65
Identity = 118/208 (56.73%), Postives = 142/208 (68.27%), Query Frame = 2
Query:   71 AIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPXXXXXXXXXXXXXXXXXXIGKAFGLKVTVISTSPKKR 694
            A+GWAARD +G  SPF F+RR    DDVTIK+L+CGICH+DLH  +NEWG   YP+VPGHEIVG V  VG  V++FK GD VGVG  V SC+ C+SC +G ENYCP M++T N  D  G  T GG+SD++VV Q YVLR P ++P D  APLLCAG+TVYSPM  YG+  P                   GKAFG+KVTVIS+SP KR
Sbjct:    8 ALGWAARDASGHLSPFSFTRRVQEEDDVTIKVLYCGICHTDLHTIKNEWGNAMYPVVPGHEIVGVVAGVGAGVTRFKAGDTVGVGYFVDSCRACDSCGKGDENYCPTMVITSNGTDYGGATTQGGFSDVMVVRQDYVLRVPASLPPDGAAPLLCAGVTVYSPMVEYGLNAPGKHLGVVGLGGLGHLGVKFGKAFGMKVTVISSSPAKR 215          
The following BLAST results are available for this feature:
BLAST of FC920278 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 120
Match NameE-valueIdentityDescription
CADH5_ORYSJ1.417e-7260.66Putative cinnamyl alcohol dehydrogenase 5 OS=Oryza... [more]
CADH8_ARATH1.732e-7059.52Cinnamyl alcohol dehydrogenase 8 OS=Arabidopsis th... [more]
CAD8B_ORYSJ1.123e-6955.11Probable cinnamyl alcohol dehydrogenase 8B OS=Oryz... [more]
CADH6_ARATH1.241e-6855.09Probable cinnamyl alcohol dehydrogenase 6 OS=Arabi... [more]
CAD8C_ORYSJ1.241e-6854.82Probable cinnamyl alcohol dehydrogenase 8C OS=Oryz... [more]
CADH7_ORYSJ6.812e-6752.42Cinnamyl alcohol dehydrogenase 7 OS=Oryza sativa s... [more]
CADH7_ARATH1.517e-6656.19Cinnamyl alcohol dehydrogenase 7 OS=Arabidopsis th... [more]
CAD8D_ORYSJ1.982e-6657.21Probable cinnamyl alcohol dehydrogenase 8D OS=Oryz... [more]
CADH6_ORYSJ2.191e-6554.79Probable cinnamyl alcohol dehydrogenase 6 OS=Oryza... [more]
CAD8A_ORYSJ2.191e-6556.73Probable cinnamyl alcohol dehydrogenase 8A OS=Oryz... [more]

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Properties
Property NameValue
Genbank descriptionC32006C02EF RVDevelop1 Citrus clementina cDNA clone C32006C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920278 ID=FC920278; Name=FC920278; organism=Citrus clementina; type=EST; length=731bp
GGAGTGAAGGATAAAGGCCAGAGAGAGAGAAAGCATGGCAAAATCACCAG
AAACAGAGCAGCCTCAAAAGGCCATTGGTTGGGCTGCCAGAGACAACACT
GGAACCTTCTCCCCATTCCATTTCTCCAGAAGAGAAACTGGTGCTGATGA
TGTAACTATTAAGATCCTCTTTTGTGGGATTTGCCACTCGGACTTGCATT
GTGCCAGAAATGAATGGGGTGTCACCAATTACCCAATTGTTCCCGGGCAT
GAAATTGTTGGTACTGTGACAAAAGTTGGAAATAACGTGTCAAAATTCAA
AGAGGGTGACAAGGTTGGAGTTGGGGTCTTGGTAGCCTCCTGCCAAAAAT
GTGAAAGCTGTCAGCAGGGCTTGGAGAATTACTGTCCTAATATGATACTT
ACATATAACTCCATTGATCGTGATGGAACAAAAACTTATGGTGGTTACTC
AGATCTGATTGTTGTTGATCAGCATTATGTGCTCCGCTTTCCTGACAACA
TGCCTCTTGATGCGGGTGCACCACTTTTGTGTGCGGGGATCACAGTGTAC
AGCCCAATGAAATATTATGGAATGACTGAGCCAGGCAAGCATTTGGGTGT
AGCAGGACTTGGTGGGCTTGGCCATGTTGCTGTGAAAATTGGCAAGGCCT
TTGGGTTGAAAGTCACCGTCATCAGTACTTCTCCGAAAAAGAGAGTGAAG
CGATCAGCAAACTGGTGCTGATGCATTCCTT
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