FC920278

Overview
NameFC920278
Unique NameFC920278
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length731
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920278_ssr20 microsatellite FC920278_ssr20:20..29. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14203 contig Ccv1_Contig14203:66..797. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920278 vs. ExPASy Swiss-Prot
Match: CADH2_TOBAC (Probable cinnamyl alcohol dehydrogenase 2 OS=Nicotiana tabacum GN=CAD19 PE=1 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.424e-56
Identity = 102/210 (48.57%), Postives = 140/210 (66.67%), Query Frame = 2
Query:   65 QKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPXXXXXXXXXXXXXXXXXXIGKAFGLKVTVISTSPKKR 694
            + AIGWAARD +G  SP+ ++ R TG +DV +K+L+CG+CHSDLH  +N+ G++NYP+VPGHE+VG V +VG +VSKFK GD VGVG+LV SC+ C  C++ +E YC   I   N +  DG  T GG+++ +VVDQ++V++ P+ M  +  APLLCAGITVYSP  ++G  +                   I KA G  VTVIS+S KKR
Sbjct:    8 KSAIGWAARDPSGLLSPYTYTLRNTGPEDVQVKVLYCGLCHSDLHQVKNDLGMSNYPLVPGHEVVGKVVEVGADVSKFKVGDTVGVGLLVGSCRNCGPCKREIEQYCNKKIWNCNDVYTDGKPTQGGFANSMVVDQNFVVKIPEGMAPEQAAPLLCAGITVYSPFNHFGFNQSGFRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKR 217          
BLAST of FC920278 vs. ExPASy Swiss-Prot
Match: CADH5_ARATH (Cinnamyl alcohol dehydrogenase 5 OS=Arabidopsis thaliana GN=CAD5 PE=1 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.428e-56
Identity = 102/213 (47.89%), Postives = 140/213 (65.73%), Query Frame = 2
Query:   56 EQPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPXXXXXXXXXXXXXXXXXXIGKAFGLKVTVISTSPKKR 694
            E  +K  GWAARD +G  SP+ ++ RETG +DV I+I+ CGICH+DLH  +N+ G++NYP+VPGHE+VG V +VG++VSKF  GD VGVG LV  C  C  C++ LE YCP  I +YN +  +G  T GG++   VV Q +V++ P+ M ++  APLLCAG+TVYSP+ ++G+ +P                  I KA G  VTVIS+S KKR
Sbjct:    5 EAERKTTGWAARDPSGILSPYTYTLRETGPEDVNIRIICCGICHTDLHQTKNDLGMSNYPMVPGHEVVGEVVEVGSDVSKFTVGDIVGVGCLVGCCGGCSPCERDLEQYCPKKIWSYNDVYINGQPTQGGFAKATVVHQKFVVKIPEGMAVEQAAPLLCAGVTVYSPLSHFGLKQPGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKR 217          
BLAST of FC920278 vs. ExPASy Swiss-Prot
Match: CADH1_ORYSJ (Probable cinnamyl alcohol dehydrogenase 1 OS=Oryza sativa subsp. japonica GN=CAD1 PE=2 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.428e-56
Identity = 105/205 (51.22%), Postives = 130/205 (63.41%), Query Frame = 2
Query:   80 WAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPXXXXXXXXXXXXXXXXXXIGKAFGLKVTVISTSPKKR 694
            WAARD +G  SP+ F+RR   +DDV+++I  CG+C++D+   RN    + YP+VPGHEI G VT+VG +V  FK GD VGVG  V SC+ CE+C   LENYC   + T+N +D DGT T GGYS  IVV + Y  + PD  PL+  APLLCAGITVYSPM  + M +P                   GKAFGLKVTVISTS  KR
Sbjct:   13 WAARDPSGILSPYKFNRRAVQSDDVSLRITHCGVCYADVAWTRNILNNSMYPLVPGHEIAGVVTEVGADVKSFKVGDHVGVGTYVNSCRDCENCNSSLENYCSQHVFTFNGVDTDGTVTKGGYSTHIVVHERYCFKIPDGYPLEKAAPLLCAGITVYSPMMRHNMNQPGKSLGVIGLGGLGHMAVKFGKAFGLKVTVISTSESKR 217          
BLAST of FC920278 vs. ExPASy Swiss-Prot
Match: CADH4_ORYSJ (Putative cinnamyl alcohol dehydrogenase 4 OS=Oryza sativa subsp. japonica GN=CAD4 PE=3 SV=2)

HSP 1 Score: 218.009 bits (554), Expect = 4.142e-56
Identity = 105/205 (51.22%), Postives = 133/205 (64.88%), Query Frame = 2
Query:   80 WAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPXXXXXXXXXXXXXXXXXXIGKAFGLKVTVISTSPKKR 694
            WAARD +G  SP+ F+RRE  ++DV+++I  CG+C++D+   RN +  + YP+VPGHEI G VT+VG +V  FK GD VGVGV V SCQ CE+C   LEN+C   ++TYNS+D DGT T GGYS  I+V Q Y  + P + PL   APLLCAGITVY+PM  + M +P                   GKAFGLKVTV STS  KR
Sbjct:   13 WAARDPSGILSPYKFNRREVQSEDVSLRITHCGVCYADVIWTRNMFNDSIYPLVPGHEIAGVVTEVGADVKGFKVGDHVGVGVYVNSCQDCENCNSSLENHCSKCVVTYNSVDSDGTVTKGGYSSHILVHQRYCFKIPADYPLSKAAPLLCAGITVYTPMIRHNMNQPGKSLGVIGLGGLGHMAVKFGKAFGLKVTVFSTSESKR 217          
BLAST of FC920278 vs. ExPASy Swiss-Prot
Match: CADH_SACOF (Probable cinnamyl alcohol dehydrogenase OS=Saccharum officinarum GN=CAD PE=2 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 9.228e-56
Identity = 97/212 (45.75%), Postives = 139/212 (65.57%), Query Frame = 2
Query:   65 QKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPXXXXXXXXXXXXXXXXXXIGKAFGLKVTVISTSPKKRVK 700
            +K +GWAARD TG  +P+ ++ R TG +DV +K+L+CGICH+D+H A+N  G + YP+VPGHE+VG V +VG  V+K+  GD VGVGV+V  C++C+ C+  +E YC   I +YN +  DG  T GG++  +VVDQ +V++ P  +  +  APLLCAG+TVYSP+K +G+T P                  + KA G  VTVIS+S KKR +
Sbjct:    8 RKVVGWAARDATGHLAPYTYTLRSTGPEDVVVKVLYCGICHTDIHQAKNHLGASKYPMVPGHEVVGEVVEVGPEVTKYGVGDVVGVGVIVGCCRECKPCKANVEQYCNKKIWSYNDVYTDGRPTQGGFASTMVVDQKFVMKIPAGLAPEQAAPLLCAGVTVYSPLKAFGLTTPGLRGAILGLGGVGHMGVKVAKAMGHHVTVISSSSKKRAE 219          
BLAST of FC920278 vs. ExPASy Swiss-Prot
Match: CADH1_TOBAC (Probable cinnamyl alcohol dehydrogenase 1 OS=Nicotiana tabacum GN=CAD14 PE=1 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 9.228e-56
Identity = 101/213 (47.42%), Postives = 139/213 (65.26%), Query Frame = 2
Query:   56 EQPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPXXXXXXXXXXXXXXXXXXIGKAFGLKVTVISTSPKKR 694
            E  +  IGWAARD +G  SP+ ++ R TG +DV +K+L+CG+CH+DLH  +N+ G++NYP+VPGHE+VG V +VG +VSKFK GD VGVG+LV SC+ C  C++ +E YC   I   N +  DG  T GG++  +VVDQ +V++ P+ M  +  APLLCAGITVYSP+ ++G  +                   I KA G  VTVIS+S KKR
Sbjct:    5 EVEKTTIGWAARDPSGVLSPYTYTLRNTGPEDVEVKVLYCGLCHTDLHQVKNDLGMSNYPLVPGHEVVGEVVEVGPDVSKFKVGDTVGVGLLVGSCRNCGPCKRDIEQYCNKKIWNCNDVYTDGKPTQGGFAKSMVVDQKFVVKIPEGMAPEQAAPLLCAGITVYSPLNHFGFKQSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKR 217          
BLAST of FC920278 vs. ExPASy Swiss-Prot
Match: CADH1_OCIBA (Cinnamyl alcohol dehydrogenase 1 OS=Ocimum basilicum GN=CAD1 PE=1 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.685e-55
Identity = 97/215 (45.12%), Postives = 138/215 (64.19%), Query Frame = 2
Query:   56 EQPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPXXXXXXXXXXXXXXXXXXIGKAFGLKVTVISTSPKKRVK 700
            E  +K +GWAARD +G  SP+ ++ R TG  DV ++++ CGICH+D+H  +N+ G++NYP+VPGHE+VG V +VG+ V+KF+ GD VGVG +V SC  C  C   +E YC   I +YN +  DG  T GG++  +VVDQ +V++ PD M  +  APLLCAG+TVYSP+ ++G+ +                   I KA G  VTVIS+S KKR +
Sbjct:    5 EVERKTVGWAARDPSGVLSPYEYTLRNTGPQDVYVEVMCCGICHTDVHQIKNDLGMSNYPMVPGHEVVGEVVEVGSEVTKFRAGDVVGVGCIVGSCGNCRPCNSDIEQYCNKKIWSYNDVYPDGKPTQGGFAGAMVVDQKFVVKIPDGMAPEQAAPLLCAGVTVYSPLNHFGLKQSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKRAE 219          
BLAST of FC920278 vs. ExPASy Swiss-Prot
Match: CADH_LOLPR (Probable cinnamyl alcohol dehydrogenase OS=Lolium perenne PE=2 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.332e-54
Identity = 97/208 (46.63%), Postives = 134/208 (64.42%), Query Frame = 2
Query:   77 GWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPXXXXXXXXXXXXXXXXXXIGKAFGLKVTVISTSPKKRVK 700
            GWAARD TG  SP+ ++ R TGA+DV +K+L+CGICH+DLH  +N  G + YP+VPGHE+VG V +VG  VSK+  GD VGVGV+V  C+ C  C+  +E YC   I +YN +  DG  T GG++  +VVDQ +V++ P  +  +  APLLCAG+TVYSP+K++G+  P                  + K+ G  VTVIS+S KKR +
Sbjct:   13 GWAARDATGHLSPYTYNLRRTGAEDVVLKVLYCGICHTDLHQTKNHLGASKYPMVPGHEVVGEVVEVGPEVSKYSVGDVVGVGVIVGCCRDCRPCKANVEQYCNKKIWSYNDVYTDGKPTQGGFAGSMVVDQKFVVKIPAGLAPEQAAPLLCAGVTVYSPLKHFGLMTPGLRGGILGLGGVGHMGVKVAKSMGHHVTVISSSDKKRAE 220          
BLAST of FC920278 vs. ExPASy Swiss-Prot
Match: CADH1_ARACO (Probable cinnamyl alcohol dehydrogenase 1 OS=Aralia cordata GN=CAD1 PE=2 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 2.968e-54
Identity = 100/214 (46.73%), Postives = 139/214 (64.95%), Query Frame = 2
Query:   56 EQPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTE-PXXXXXXXXXXXXXXXXXXIGKAFGLKVTVISTSPKKR 694
            E  +K  GWAARD +G  SP+ ++ RETG +DV IKI++CGICH+D+H  +N+ G +NYP+VPGHE+VG V +VG++V+KFK GD VG G +V  C+ C  C+  +E YC   I +YN +  DG  T GG+S  +VVDQ +V++ PD M  +  APLLCAG+TVYSP+ ++G+ E                    + KA G  VTVIS+S KK+
Sbjct:    5 EAERKTTGWAARDPSGVLSPYTYTLRETGPEDVFIKIIYCGICHTDIHQIKNDLGASNYPMVPGHEVVGEVVEVGSDVTKFKVGDCVGDGTIVGCCKTCRPCKADVEQYCNKKIWSYNDVYTDGKPTQGGFSGHMVVDQKFVVKIPDGMAPEQAAPLLCAGVTVYSPLTHFGLKEISGLRGGILGLGGVGHMGVKLAKAMGHHVTVISSSDKKK 218          
BLAST of FC920278 vs. ExPASy Swiss-Prot
Match: CADH2_ORYSJ (Cinnamyl alcohol dehydrogenase 2 OS=Oryza sativa subsp. japonica GN=CAD2 PE=1 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 8.637e-54
Identity = 92/206 (44.66%), Postives = 136/206 (66.02%), Query Frame = 2
Query:   77 GWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPXXXXXXXXXXXXXXXXXXIGKAFGLKVTVISTSPKKR 694
            GWAARD +G  +P++++ R+TG +DV +K+L+CGICH+D+H A+N  G + YP+VPGHE+VG V +VG  V+K+  GD VGVGV+V  C++C  C+  +E YC   I +YN +  DG  T GG++  +VVDQ +V++ P  +  +  APLLCAG+TVYSP+K++G+  P                  + K+ G  VTVIS+S +KR
Sbjct:   12 GWAARDASGHLTPYNYTLRKTGPEDVVVKVLYCGICHTDIHQAKNHLGASKYPMVPGHEVVGEVVEVGPEVTKYSAGDVVGVGVIVGCCRECHPCKANVEQYCNKRIWSYNDVYTDGRPTQGGFASAMVVDQKFVVKIPAGLAPEQAAPLLCAGLTVYSPLKHFGLMSPGLRGGVLGLGGVGHMGVKVAKSMGHHVTVISSSARKR 217          
The following BLAST results are available for this feature:
BLAST of FC920278 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 120
Match NameE-valueIdentityDescription
CADH2_TOBAC1.424e-5648.57Probable cinnamyl alcohol dehydrogenase 2 OS=Nicot... [more]
CADH5_ARATH2.428e-5647.89Cinnamyl alcohol dehydrogenase 5 OS=Arabidopsis th... [more]
CADH1_ORYSJ2.428e-5651.22Probable cinnamyl alcohol dehydrogenase 1 OS=Oryza... [more]
CADH4_ORYSJ4.142e-5651.22Putative cinnamyl alcohol dehydrogenase 4 OS=Oryza... [more]
CADH_SACOF9.228e-5645.75Probable cinnamyl alcohol dehydrogenase OS=Sacchar... [more]
CADH1_TOBAC9.228e-5647.42Probable cinnamyl alcohol dehydrogenase 1 OS=Nicot... [more]
CADH1_OCIBA2.685e-5545.12Cinnamyl alcohol dehydrogenase 1 OS=Ocimum basilic... [more]
CADH_LOLPR1.332e-5446.63Probable cinnamyl alcohol dehydrogenase OS=Lolium ... [more]
CADH1_ARACO2.968e-5446.73Probable cinnamyl alcohol dehydrogenase 1 OS=Arali... [more]
CADH2_ORYSJ8.637e-5444.66Cinnamyl alcohol dehydrogenase 2 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionC32006C02EF RVDevelop1 Citrus clementina cDNA clone C32006C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920278 ID=FC920278; Name=FC920278; organism=Citrus clementina; type=EST; length=731bp
GGAGTGAAGGATAAAGGCCAGAGAGAGAGAAAGCATGGCAAAATCACCAG
AAACAGAGCAGCCTCAAAAGGCCATTGGTTGGGCTGCCAGAGACAACACT
GGAACCTTCTCCCCATTCCATTTCTCCAGAAGAGAAACTGGTGCTGATGA
TGTAACTATTAAGATCCTCTTTTGTGGGATTTGCCACTCGGACTTGCATT
GTGCCAGAAATGAATGGGGTGTCACCAATTACCCAATTGTTCCCGGGCAT
GAAATTGTTGGTACTGTGACAAAAGTTGGAAATAACGTGTCAAAATTCAA
AGAGGGTGACAAGGTTGGAGTTGGGGTCTTGGTAGCCTCCTGCCAAAAAT
GTGAAAGCTGTCAGCAGGGCTTGGAGAATTACTGTCCTAATATGATACTT
ACATATAACTCCATTGATCGTGATGGAACAAAAACTTATGGTGGTTACTC
AGATCTGATTGTTGTTGATCAGCATTATGTGCTCCGCTTTCCTGACAACA
TGCCTCTTGATGCGGGTGCACCACTTTTGTGTGCGGGGATCACAGTGTAC
AGCCCAATGAAATATTATGGAATGACTGAGCCAGGCAAGCATTTGGGTGT
AGCAGGACTTGGTGGGCTTGGCCATGTTGCTGTGAAAATTGGCAAGGCCT
TTGGGTTGAAAGTCACCGTCATCAGTACTTCTCCGAAAAAGAGAGTGAAG
CGATCAGCAAACTGGTGCTGATGCATTCCTT
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