FC920278

Overview
NameFC920278
Unique NameFC920278
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length731
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920278_ssr20 microsatellite FC920278_ssr20:20..29. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14203 contig Ccv1_Contig14203:66..797. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920278 vs. ExPASy Swiss-Prot
Match: ADH6_YEAST (NADP-dependent alcohol dehydrogenase 6 OS=Saccharomyces cerevisiae GN=ADH6 PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.613e-34
Identity = 76/183 (41.53%), Postives = 101/183 (55.19%), Query Frame = 2
Query:  149 DVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVG-NNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPXXXXXXXXXXXXXXXXXXIGKAFGLKVTVISTSPKKR 694
            D+ IKI  CG+C SD+HCA   WG    P+V GHEIVG V K+G  + S  K G +VGVG  V SC +C+ C+   E YC   + TY+    DG  + GGY++ + V +H+V+  P+N+P    APLLC G+TVYSP+   G   P                  I KA G +  VIS S +KR
Sbjct:   35 DIDIKIEACGVCGSDIHCAAGHWGNMKMPLVVGHEIVGKVVKLGPKSNSGLKVGQRVGVGAQVFSCLECDRCKNDNEPYCTKFVTTYSQPYEDGYVSQGGYANYVRVHEHFVVPIPENIPSHLAAPLLCGGLTVYSPLVRNG-CGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKR 216          
BLAST of FC920278 vs. ExPASy Swiss-Prot
Match: YL498_MIMIV (Probable zinc-type alcohol dehydrogenase-like protein L498 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L498 PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 6.023e-31
Identity = 79/232 (34.05%), Postives = 117/232 (50.43%), Query Frame = 2
Query:   41 KSPETEQPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILT-YNSIDR-------DGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPXXXXXXXXXXXXXXXXXXIGKAFGLKVTVISTSPKKRVKRSAN 712
            KSP+      A+G+   D         F R++   ++V+I+I + GICHSD H    EW   ++P++PGHE++G V  +G NV K+  GD V V  ++ SC  C+ C   +E +C N     YN   R        G  TYGGYS+++++ QH+V +FP N+ ++  APL+CAG T YSP++      P                  I KA G  V  I T  + + K S N
Sbjct:   64 KSPDK---MTALGFGVTDVGKPVELLVFDRKKPTNNEVSIEIYYTGICHSDWHFIVGEWKA-DFPLIPGHELIGRVIDIGPNVDKYSIGDIVCVSPVIDSCGHCKMCTHHIEQHCMNGATEIYNQKTRLPGDIKPSGPITYGGYSNIVIIKQHFVYKFPKNLDIERCAPLMCAGATTYSPLR-QAKVGPGMKVGIVGIGGLGHIAVKIAKAMGAHVVAI-TRTEWKFKDSVN 289          
BLAST of FC920278 vs. ExPASy Swiss-Prot
Match: ADH7_YEAST (NADP-dependent alcohol dehydrogenase 7 OS=Saccharomyces cerevisiae GN=ADH7 PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.891e-27
Identity = 69/193 (35.75%), Postives = 98/193 (50.78%), Query Frame = 2
Query:  122 FSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNV-SKFKEGDKVGVGVLVASCQKCESCQQGLENYCPN-MILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPXXXXXXXXXXXXXXXXXXIGKAFGLKVTVISTSPKKR 694
            F  +  G  DV ++I  CGIC SD H A   WG      + GHEI+G V KVG+   +  K GD+VGVG    +C +CE C+   E YC N  +LT  +  +DG  + GG++  + + +H+ ++ P+N+P    APLLC GITV+SP+   G   P                  + KA G +V   S    KR
Sbjct:   26 FDPKPFGDHDVDVEIEACGICGSDFHIAVGNWGPVPENQILGHEIIGRVVKVGSKCHTGVKIGDRVGVGAQALACFECERCKSDNEQYCTNDHVLTMWTPYKDGYISQGGFASHVRLHEHFAIQIPENIPSPLAAPLLCGGITVFSPLLRNG-CGPGKRVGIVGIGGIGHMGILLAKAMGAEVYAFSRGHSKR 217          
BLAST of FC920278 vs. ExPASy Swiss-Prot
Match: ADH2_BACST (Alcohol dehydrogenase OS=Bacillus stearothermophilus GN=adh PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 9.000e-27
Identity = 64/182 (35.16%), Postives = 90/182 (49.45%), Query Frame = 2
Query:  149 DVTIKILFCGICHSDLHCARNEWGVT-NYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPXXXXXXXXXXXXXXXXXXIGKAFGLKVTVISTSPKK 691
            +V +KI  CG+CH+DLH A  +W +    P++PGHE VG V +V   V   K GD+VG+  L ++C +CE C  G E  CP+ +    S+D       GGY++       YV + PDN+     AP+LCAG+T Y  +K  G   P                    KA GL V  +  S +K
Sbjct:   27 EVLVKIEACGVCHTDLHAAHGDWPIKPKLPLIPGHEGVGIVVEVAKGVKSIKVGDRVGIPWLYSACGECEYCLTGQETLCPHQLNGGYSVD-------GGYAEYCKAPADYVAKIPDNLDPVEVAPILCAGVTTYKALKVSG-ARPGEWVAIYGIGGLGHIALQYAKAMGLNVVAVDISDEK 200          
BLAST of FC920278 vs. ExPASy Swiss-Prot
Match: ADH3_BACST (Alcohol dehydrogenase OS=Bacillus stearothermophilus PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.951e-26
Identity = 61/182 (33.52%), Postives = 90/182 (49.45%), Query Frame = 2
Query:  149 DVTIKILFCGICHSDLHCARNEWGVT-NYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPXXXXXXXXXXXXXXXXXXIGKAFGLKVTVISTSPKK 691
            +V ++I  CG+CH+DLH A  +W V    P++PGHE VG V +VG  V+  K GD+VG+  L ++C  C+ C  G E  C +      S+D       GGY++       YV++ PDN+  +  AP+ CAG+T Y  +K  G  +P                    KA GL V  +    +K
Sbjct:   27 EVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGHEGVGIVEEVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLCEHQKNAGYSVD-------GGYAEYCRAAADYVVKIPDNLSFEEAAPIFCAGVTTYKALKVTG-AKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEK 200          
BLAST of FC920278 vs. ExPASy Swiss-Prot
Match: ADH1_BACST (Alcohol dehydrogenase OS=Bacillus stearothermophilus GN=adhT PE=1 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 1.300e-25
Identity = 60/182 (32.97%), Postives = 89/182 (48.90%), Query Frame = 2
Query:  149 DVTIKILFCGICHSDLHCARNEWGVT-NYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPXXXXXXXXXXXXXXXXXXIGKAFGLKVTVISTSPKK 691
            +V ++I  CG+CH+DLH A  +W V    P++PGHE VG + +VG  V+  K GD+VG+  L ++C  C+ C  G E  C        S+D       GGY++       YV++ PDN+  +  AP+ CAG+T Y  +K  G  +P                    KA GL V  +    +K
Sbjct:   27 EVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGHEGVGVIEEVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLCERQQNAGYSVD-------GGYAEYCRAAADYVVKIPDNLSFEEAAPIFCAGVTTYKALKVTG-AKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDLGDEK 200          
BLAST of FC920278 vs. ExPASy Swiss-Prot
Match: YJGB_ECOLI (Uncharacterized zinc-type alcohol dehydrogenase-like protein yjgB OS=Escherichia coli (strain K12) GN=yjgB PE=3 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 6.450e-25
Identity = 60/206 (29.13%), Postives = 101/206 (49.03%), Query Frame = 2
Query:   80 WAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSK--FKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPXXXXXXXXXXXXXXXXXXIGKAFGLKVTVISTSPKK 691
            +AA++  G    + +   E    DV +++ +CGICHSDL    NEWG + YP+V GHE++G V  +G+       + G +VG+G    SC  C++C  G +  C    +             GG+++ +  D  +V+  P+N+ +++  PLLC GITV+ P+  + +T                    +  A G +VT  S++P K
Sbjct:    7 YAAKEAGGELEVYEYDPGELRPQDVEVQVDYCGICHSDLSMIDNEWGFSQYPLVAGHEVIGRVVALGSAAQDKGLQVGQRVGIGWTARSCGHCDACISGNQINCEQGAV-------PTIMNRGGFAEKLRADWQWVIPLPENIDIESAGPLLCGGITVFKPLLMHHITATSRVGVIGIGGLGHIAIKLL-HAMGCEVTAFSSNPAK 204          
BLAST of FC920278 vs. ExPASy Swiss-Prot
Match: ADH1_ASPFN (Alcohol dehydrogenase 1 OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC 167) GN=adh1 PE=2 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 1.437e-24
Identity = 61/186 (32.80%), Postives = 93/186 (50.00%), Query Frame = 2
Query:  140 GADDVTIKILFCGICHSDLHCARNEWGV-TNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPXXXXXXXXXXXXXXXXXXIGKAFGLKVTVISTSPKKR 694
            G D++ +K+ + G+CH+DLH  + +W +    P+V GHE  G V   G+ V++F+ GD  G+  L  SC  CE C+Q  E  CPN  L+  ++D       G +    +    +  + P N+PLDA AP+LCAGITVY  +K  G+                       KA G++V  I    +K+
Sbjct:   30 GPDEILVKVRYSGVCHTDLHALKGDWPLPVKMPLVGGHEGAGVVVARGDLVTEFEIGDHAGLKWLNGSCLACEFCKQADEPLCPNASLSGYTVD-------GTFQQYAIGKATHASKLPKNVPLDAVAPVLCAGITVYKGLKESGVRPGQTVAIVGAGGGLGSLALQYAKAMGIRVVAIDGGEEKQ 208          
BLAST of FC920278 vs. ExPASy Swiss-Prot
Match: ADH3_EMENI (Alcohol dehydrogenase 3 OS=Emericella nidulans GN=alcC PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.131e-24
Identity = 61/188 (32.45%), Postives = 90/188 (47.87%), Query Frame = 2
Query:  140 GADDVTIKILFCGICHSDLHCARNEWGV-TNYPIVPGHEIVGTVTKVGNNVSK--FKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPXXXXXXXXXXXXXXXXXXIGKAFGLKVTVISTSPKKR 694
            G D++ +K+ + G+CH+DLH  + +W + +  P++ GHE  G V   G  V    FK GD+ G+  L  SC  CE C Q  E  CP+  L+  ++D       G +    +       + PDN+PLDA AP+LCAGITVY  +K  G                        KA GL+   I +  +K+
Sbjct:   30 GPDEILVKMRYSGVCHTDLHAMKGDWPLPSKMPLIGGHEGAGVVVAKGELVKDEDFKIGDRAGIKWLNGSCLSCEMCMQADEPLCPHASLSGYTVD-------GTFQQYTIGKAALASKIPDNVPLDAAAPILCAGITVYKGLKESGARPGQTVAIVGAGGGLGSLAQQYAKAMGLRTIAIDSGDEKK 210          
BLAST of FC920278 vs. ExPASy Swiss-Prot
Match: ADH_SCHPO (Alcohol dehydrogenase OS=Schizosaccharomyces pombe GN=adh1 PE=1 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.589e-23
Identity = 51/144 (35.42%), Postives = 83/144 (57.64%), Query Frame = 2
Query:  134 ETGADDVTIKILFCGICHSDLHCARNEWGV-TNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMK 562
            E G D+V + I + G+CH+DLH  + +W +    P++ GHE  G V KVG  V++ K GD+VGV  + +SC  CE C +  E  CP++ L+  ++D       G +    + +  +    P+++PL+  AP++CAGIT Y  +K
Sbjct:   30 EPGQDEVLVNIKYTGVCHTDLHALQGDWPLPAKMPLIGGHEGAGVVVKVGAGVTRLKIGDRVGVKWMNSSCGNCEYCMKAEETICPHIQLSGYTVD-------GTFQHYCIANATHATIIPESVPLEVAAPIMCAGITCYRALK 166          
The following BLAST results are available for this feature:
BLAST of FC920278 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 120
Match NameE-valueIdentityDescription
ADH6_YEAST2.613e-3441.53NADP-dependent alcohol dehydrogenase 6 OS=Saccharo... [more]
YL498_MIMIV6.023e-3134.05Probable zinc-type alcohol dehydrogenase-like prot... [more]
ADH7_YEAST6.891e-2735.75NADP-dependent alcohol dehydrogenase 7 OS=Saccharo... [more]
ADH2_BACST9.000e-2735.16Alcohol dehydrogenase OS=Bacillus stearothermophil... [more]
ADH3_BACST9.951e-2633.52Alcohol dehydrogenase OS=Bacillus stearothermophil... [more]
ADH1_BACST1.300e-2532.97Alcohol dehydrogenase OS=Bacillus stearothermophil... [more]
YJGB_ECOLI6.450e-2529.13Uncharacterized zinc-type alcohol dehydrogenase-li... [more]
ADH1_ASPFN1.437e-2432.80Alcohol dehydrogenase 1 OS=Aspergillus flavus (str... [more]
ADH3_EMENI7.131e-2432.45Alcohol dehydrogenase 3 OS=Emericella nidulans GN=... [more]
ADH_SCHPO1.589e-2335.42Alcohol dehydrogenase OS=Schizosaccharomyces pombe... [more]

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Properties
Property NameValue
Genbank descriptionC32006C02EF RVDevelop1 Citrus clementina cDNA clone C32006C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920278 ID=FC920278; Name=FC920278; organism=Citrus clementina; type=EST; length=731bp
GGAGTGAAGGATAAAGGCCAGAGAGAGAGAAAGCATGGCAAAATCACCAG
AAACAGAGCAGCCTCAAAAGGCCATTGGTTGGGCTGCCAGAGACAACACT
GGAACCTTCTCCCCATTCCATTTCTCCAGAAGAGAAACTGGTGCTGATGA
TGTAACTATTAAGATCCTCTTTTGTGGGATTTGCCACTCGGACTTGCATT
GTGCCAGAAATGAATGGGGTGTCACCAATTACCCAATTGTTCCCGGGCAT
GAAATTGTTGGTACTGTGACAAAAGTTGGAAATAACGTGTCAAAATTCAA
AGAGGGTGACAAGGTTGGAGTTGGGGTCTTGGTAGCCTCCTGCCAAAAAT
GTGAAAGCTGTCAGCAGGGCTTGGAGAATTACTGTCCTAATATGATACTT
ACATATAACTCCATTGATCGTGATGGAACAAAAACTTATGGTGGTTACTC
AGATCTGATTGTTGTTGATCAGCATTATGTGCTCCGCTTTCCTGACAACA
TGCCTCTTGATGCGGGTGCACCACTTTTGTGTGCGGGGATCACAGTGTAC
AGCCCAATGAAATATTATGGAATGACTGAGCCAGGCAAGCATTTGGGTGT
AGCAGGACTTGGTGGGCTTGGCCATGTTGCTGTGAAAATTGGCAAGGCCT
TTGGGTTGAAAGTCACCGTCATCAGTACTTCTCCGAAAAAGAGAGTGAAG
CGATCAGCAAACTGGTGCTGATGCATTCCTT
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