FC920278

Overview
NameFC920278
Unique NameFC920278
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length731
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920278_ssr20 microsatellite FC920278_ssr20:20..29. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14203 contig Ccv1_Contig14203:66..797. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920278 vs. ExPASy Swiss-Prot
Match: ADH2_YEAST (Alcohol dehydrogenase 2 OS=Saccharomyces cerevisiae GN=ADH2 PE=1 SV=3)

HSP 1 Score: 97.0561 bits (240), Expect = 1.066e-19
Identity = 57/183 (31.15%), Postives = 79/183 (43.17%), Query Frame = 2
Query:  146 DDVTIKILFCGICHSDLHCARNEWGV-TNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPXXXXXXXXXXXXXXXXXXIGKAFGLKVTVISTSPKK 691
            +++ I + + G+CH+DLH    +W + T  P+V GHE  G V  +G NV  +K GD  G+  L  SC  CE C+ G E+ CP+        D  G    G + +    D       P    L   AP+LCAGITVY  +K   +                       KA G +V  I   P K
Sbjct:   32 NELLINVKYSGVCHTDLHAWHGDWPLPTKLPLVGGHEGAGVVVGMGENVKGWKIGDYAGIKWLNGSCMACEYCELGNESNCPH-------ADLSGYTHDGSFQEYATADAVQAAHIPQGTDLAEVAPILCAGITVYKALKSANLRAGHWAAISGAAGGLGSLAVQYAKAMGYRVLGIDGGPGK 207          
BLAST of FC920278 vs. ExPASy Swiss-Prot
Match: ADH2_CANAL (Alcohol dehydrogenase 2 OS=Candida albicans GN=ADH2 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.392e-19
Identity = 52/141 (36.88%), Postives = 69/141 (48.94%), Query Frame = 2
Query:  143 ADDVTIKILFCGICHSDLHCARNEWGV-TNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMK 562
            A+++ I + + G+CH+DLH  + +W + T  P+V GHE  G V  +G NV  +K GD  GV  L  SC  CE CQ G E  C          D  G    G +      D     R P    L   AP+LCAG+TVY  +K
Sbjct:   31 ANELLINVKYSGVCHTDLHAWKGDWPLATKLPLVGGHEGAGVVVALGENVKGWKVGDYAGVKWLNGSCLNCEYCQSGAEPNCA-------EADLSGYTHDGSFQQYATADAVQAARIPAGTDLANVAPILCAGVTVYKALK 164          
BLAST of FC920278 vs. ExPASy Swiss-Prot
Match: ADH2_KLULA (Alcohol dehydrogenase 2 OS=Kluyveromyces lactis GN=ADH2 PE=3 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.818e-19
Identity = 56/184 (30.43%), Postives = 80/184 (43.48%), Query Frame = 2
Query:  143 ADDVTIKILFCGICHSDLHCARNEWGV-TNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPXXXXXXXXXXXXXXXXXXIGKAFGLKVTVISTSPKK 691
            A+++ I + + G+CH+DLH  + +W + T  P+V GHE  G V  +G NV  +  GD  G+  L  SC  CE C+   E+ CP+        D  G    G +      D     R P    L   AP+LCAG+TVY  +K   +                       KA G +V  I T  +K
Sbjct:   31 ANELLINVKYSGVCHTDLHAWKGDWPLPTKLPLVGGHEGAGVVVAMGENVKGWNIGDFAGIKWLNGSCMSCEYCELSNESNCPD-------ADLSGYTHDGSFQQYATADAVQAARIPKGTDLAEVAPILCAGVTVYKALKSADLKAGDWVAISGACGGLGSLAIQYAKAMGYRVLGIDTGAEK 207          
BLAST of FC920278 vs. ExPASy Swiss-Prot
Match: ADH1_KLUMA (Alcohol dehydrogenase 1 OS=Kluyveromyces marxianus GN=ADH1 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.374e-19
Identity = 49/140 (35.00%), Postives = 71/140 (50.71%), Query Frame = 2
Query:  146 DDVTIKILFCGICHSDLHCARNEWGV-TNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMK 562
            +++ I + + G+CH+DLH  + +W + T  P+V GHE  G V  +G NV+ ++ GD  G+  L  SC  CE C+   E  CP         D  G    G +      D     R P N+ L   AP+LCAG+TVY  +K
Sbjct:   32 NELLINVKYSGVCHTDLHAWQGDWPLDTKLPLVGGHEGAGIVVAMGENVTGWEIGDYAGIKWLNGSCMSCEECELSNEPNCP-------KADLSGYTHDGSFQQYATADAVQAARIPKNVDLAEVAPILCAGVTVYKALK 164          
BLAST of FC920278 vs. ExPASy Swiss-Prot
Match: ADH4_KLULA (Alcohol dehydrogenase 4, mitochondrial OS=Kluyveromyces lactis GN=ADH4 PE=3 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 4.049e-19
Identity = 49/141 (34.75%), Postives = 69/141 (48.94%), Query Frame = 2
Query:  143 ADDVTIKILFCGICHSDLHCARNEWGV-TNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMK 562
            A+++ I + + G+CH+DLH  + +W +    P+V GHE  G V   G NV  F+ GD  G+  L  SC  CE C+QG E+ C          D  G    G +      D     + P    L   AP+LCAG+TVY  +K
Sbjct:   58 ANEILINVKYSGVCHTDLHAWKGDWPLPVKLPLVGGHEGAGIVVAKGENVKNFEIGDYAGIKWLNGSCMSCELCEQGYESNC-------LQADLSGYTHDGSFQQYATADAVQAAQIPKGTDLAEIAPILCAGVTVYKALK 191          
BLAST of FC920278 vs. ExPASy Swiss-Prot
Match: ADH2_KLUMA (Alcohol dehydrogenase 2 OS=Kluyveromyces marxianus GN=ADH2 PE=3 SV=3)

HSP 1 Score: 94.7449 bits (234), Expect = 5.289e-19
Identity = 48/141 (34.04%), Postives = 71/141 (50.35%), Query Frame = 2
Query:  143 ADDVTIKILFCGICHSDLHCARNEWGV-TNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMK 562
            ++++ I + + G+CH+DLH  + +W + T  P+V GHE  G V  +G+NV  +K GD  G+  L  SC  CE C+   E+ CP+        D  G    G +      D       P    L   AP+LCAG+TVY  +K
Sbjct:   31 SNELLINVKYSGVCHTDLHAWKGDWPLDTKLPLVGGHEGAGVVVAMGDNVKGWKIGDLAGIKWLNGSCMNCEECELSNESNCPD-------ADLSGYTHDGSFQQYATADAVQAAHIPAGTDLAQVAPILCAGVTVYKALK 164          
BLAST of FC920278 vs. ExPASy Swiss-Prot
Match: ADH1_YEAST (Alcohol dehydrogenase 1 OS=Saccharomyces cerevisiae GN=ADH1 PE=1 SV=4)

HSP 1 Score: 94.7449 bits (234), Expect = 5.289e-19
Identity = 50/141 (35.46%), Postives = 69/141 (48.94%), Query Frame = 2
Query:  143 ADDVTIKILFCGICHSDLHCARNEWGV-TNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMK 562
            A+++ I + + G+CH+DLH    +W +    P+V GHE  G V  +G NV  +K GD  G+  L  SC  CE C+ G E+ CP+        D  G    G +      D       P    L   AP+LCAGITVY  +K
Sbjct:   31 ANELLINVKYSGVCHTDLHAWHGDWPLPVKLPLVGGHEGAGVVVGMGENVKGWKIGDYAGIKWLNGSCMACEYCELGNESNCPH-------ADLSGYTHDGSFQQYATADAVQAAHIPQGTDLAQVAPILCAGITVYKALK 164          
BLAST of FC920278 vs. ExPASy Swiss-Prot
Match: ADH3_KLULA (Alcohol dehydrogenase 3, mitochondrial OS=Kluyveromyces lactis GN=ADH3 PE=3 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 9.021e-19
Identity = 48/140 (34.29%), Postives = 69/140 (49.29%), Query Frame = 2
Query:  146 DDVTIKILFCGICHSDLHCARNEWGV-TNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMK 562
            +++ I + + G+CH+DLH  + +W + T  P+V GHE  G V  +G NV  +  GD  G+  L  SC  CE C+   E+ CP+        D  G    G +      D     R P    L   AP+LCAG+TVY  +K
Sbjct:   58 NEILINVKYSGVCHTDLHAWKGDWPLPTKLPLVGGHEGAGVVVAMGENVKGWNIGDFAGIKWLNGSCMSCEYCELSNESNCPD-------ADLSGYTHDGSFQQYATADAVQAARIPKGTDLAEVAPILCAGVTVYKALK 190          
BLAST of FC920278 vs. ExPASy Swiss-Prot
Match: ADH1_KLULA (Alcohol dehydrogenase 1 OS=Kluyveromyces lactis GN=ADH1 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.021e-19
Identity = 49/141 (34.75%), Postives = 70/141 (49.65%), Query Frame = 2
Query:  143 ADDVTIKILFCGICHSDLHCARNEWGV-TNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMK 562
            A+++ I + + G+CH+DLH  + +W + T  P+V GHE  G V  +G NV  +K GD  G+  L  SC  CE C+   E+ CP         D  G    G +      D     + P    L   AP+LCAG+TVY  +K
Sbjct:   33 ANELLINVKYSGVCHTDLHAWKGDWPLPTKLPLVGGHEGAGVVVAMGENVKGWKIGDFAGIKWLNGSCMSCEYCELSNESNCP-------EADLSGYTHDGSFQQYATADAVQAAKIPVGTDLAEVAPVLCAGVTVYKALK 166          
BLAST of FC920278 vs. ExPASy Swiss-Prot
Match: ADH1_PICST (Alcohol dehydrogenase 1 OS=Pichia stipitis GN=ADH1 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.178e-18
Identity = 49/140 (35.00%), Postives = 69/140 (49.29%), Query Frame = 2
Query:  146 DDVTIKILFCGICHSDLHCARNEWGV-TNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMK 562
            +++ I + + G+CH+DLH  + +W + T  P+V GHE  G V  +G+NV+ ++ GD  G+  L  SC  CE CQ   E  C          D  G    G +      D     R P    L   AP+LCAGITVY  +K
Sbjct:   32 NEILINVKYSGVCHTDLHAWKGDWPLDTKLPLVGGHEGAGVVVGIGSNVTGWELGDYAGIKWLNGSCLNCEFCQHSDEPNCA-------KADLSGYTHDGSFQQYATADAVQAARLPKGTDLAQAAPILCAGITVYKALK 164          
The following BLAST results are available for this feature:
BLAST of FC920278 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 120
Match NameE-valueIdentityDescription
ADH2_YEAST1.066e-1931.15Alcohol dehydrogenase 2 OS=Saccharomyces cerevisia... [more]
ADH2_CANAL1.392e-1936.88Alcohol dehydrogenase 2 OS=Candida albicans GN=ADH... [more]
ADH2_KLULA1.818e-1930.43Alcohol dehydrogenase 2 OS=Kluyveromyces lactis GN... [more]
ADH1_KLUMA2.374e-1935.00Alcohol dehydrogenase 1 OS=Kluyveromyces marxianus... [more]
ADH4_KLULA4.049e-1934.75Alcohol dehydrogenase 4, mitochondrial OS=Kluyvero... [more]
ADH2_KLUMA5.289e-1934.04Alcohol dehydrogenase 2 OS=Kluyveromyces marxianus... [more]
ADH1_YEAST5.289e-1935.46Alcohol dehydrogenase 1 OS=Saccharomyces cerevisia... [more]
ADH3_KLULA9.021e-1934.29Alcohol dehydrogenase 3, mitochondrial OS=Kluyvero... [more]
ADH1_KLULA9.021e-1934.75Alcohol dehydrogenase 1 OS=Kluyveromyces lactis GN... [more]
ADH1_PICST1.178e-1835.00Alcohol dehydrogenase 1 OS=Pichia stipitis GN=ADH1... [more]

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Properties
Property NameValue
Genbank descriptionC32006C02EF RVDevelop1 Citrus clementina cDNA clone C32006C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920278 ID=FC920278; Name=FC920278; organism=Citrus clementina; type=EST; length=731bp
GGAGTGAAGGATAAAGGCCAGAGAGAGAGAAAGCATGGCAAAATCACCAG
AAACAGAGCAGCCTCAAAAGGCCATTGGTTGGGCTGCCAGAGACAACACT
GGAACCTTCTCCCCATTCCATTTCTCCAGAAGAGAAACTGGTGCTGATGA
TGTAACTATTAAGATCCTCTTTTGTGGGATTTGCCACTCGGACTTGCATT
GTGCCAGAAATGAATGGGGTGTCACCAATTACCCAATTGTTCCCGGGCAT
GAAATTGTTGGTACTGTGACAAAAGTTGGAAATAACGTGTCAAAATTCAA
AGAGGGTGACAAGGTTGGAGTTGGGGTCTTGGTAGCCTCCTGCCAAAAAT
GTGAAAGCTGTCAGCAGGGCTTGGAGAATTACTGTCCTAATATGATACTT
ACATATAACTCCATTGATCGTGATGGAACAAAAACTTATGGTGGTTACTC
AGATCTGATTGTTGTTGATCAGCATTATGTGCTCCGCTTTCCTGACAACA
TGCCTCTTGATGCGGGTGCACCACTTTTGTGTGCGGGGATCACAGTGTAC
AGCCCAATGAAATATTATGGAATGACTGAGCCAGGCAAGCATTTGGGTGT
AGCAGGACTTGGTGGGCTTGGCCATGTTGCTGTGAAAATTGGCAAGGCCT
TTGGGTTGAAAGTCACCGTCATCAGTACTTCTCCGAAAAAGAGAGTGAAG
CGATCAGCAAACTGGTGCTGATGCATTCCTT
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