FC920278

Overview
NameFC920278
Unique NameFC920278
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length731
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920278_ssr20 microsatellite FC920278_ssr20:20..29. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14203 contig Ccv1_Contig14203:66..797. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920278 vs. ExPASy Swiss-Prot
Match: ADH2_PICST (Alcohol dehydrogenase 2 OS=Pichia stipitis GN=ADH2 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.428e-18
Identity = 48/140 (34.29%), Postives = 71/140 (50.71%), Query Frame = 2
Query:  146 DDVTIKILFCGICHSDLHCARNEWGV-TNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMK 562
            +++ I + + G+CH+DLH  + +W + T  P+V GHE  G V  +G NV+ ++ GD  G+  +  SC +CE C    E+ CP+        D  G    G +      D     R P    L   AP+LCAGITVY  +K
Sbjct:   32 NELLINVKYSGVCHTDLHAWKGDWPLDTKLPLVGGHEGAGVVVALGENVTGWEIGDYAGIKWINGSCLQCEYCVTAHESNCPD-------ADLSGYTHDGSFQQYATADAIQAARIPKGTDLALIAPILCAGITVYKALK 164          
BLAST of FC920278 vs. ExPASy Swiss-Prot
Match: ADH1_CAEEL (Alcohol dehydrogenase 1 OS=Caenorhabditis elegans GN=sodh-1 PE=1 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 9.974e-18
Identity = 51/140 (36.43%), Postives = 80/140 (57.14%), Query Frame = 2
Query:  146 DDVTIKILFCGICHSDLHCARNEW-GVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMK 562
            D++ +KI + GICHSDLH    +   ++  P+V GHE  G+V ++G NV+ ++ GDK GV ++  +C  CE C++G E  C + I  Y   DR GT     + + + +      +   +  L A AP+LCAG+TVY  +K
Sbjct:   34 DEILVKIEYSGICHSDLHVWLGDLKDMSVCPLVGGHEGAGSVVQIGKNVTGWQLGDKAGVKLMNFNCLNCEFCKKGHEPLC-HHIQNY-GFDRSGT-----FQEYLTIRGVDAAKINKDTNLAAAAPILCAGVTVYKALK 166          
BLAST of FC920278 vs. ExPASy Swiss-Prot
Match: ADH2_CAEEL (Alcohol dehydrogenase 2 OS=Caenorhabditis elegans GN=sodh-2 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.902e-17
Identity = 52/183 (28.42%), Postives = 88/183 (48.09%), Query Frame = 2
Query:  146 DDVTIKILFCGICHSDLHCARNEWGVTNY-PIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPXXXXXXXXXXXXXXXXXXIGKAFGLKVTVISTSPKK 691
            +++ +KI + GICHSDLH    ++   +  P++ GHE  GTV  +G+ V  +  GD+ G+ ++ A+C  CE C+ G E  C + I  Y  IDR GT     + + + +     ++  ++  L A AP+LC G+T Y  +K   +                       KA G++V  +    K+
Sbjct:   35 NELLVKIEYSGICHSDLHTWEGDFEYASICPLIGGHEGAGTVVTIGSKVKGWNIGDRAGIKLINANCLNCEYCKTGHEPLCDH-IQNY-GIDRHGT-----FQEYLTIRDIDAIKVSNDTNLAAAAPVLCGGVTAYKSLKATNVKPGQIVVLTGAGGGLGSFGIQYAKAMGMRVVAVDHISKE 210          
BLAST of FC920278 vs. ExPASy Swiss-Prot
Match: ADHA_MYCTU (Probable alcohol dehydrogenase adhA OS=Mycobacterium tuberculosis GN=adhA PE=3 SV=3)

HSP 1 Score: 88.5817 bits (218), Expect = 3.790e-17
Identity = 48/139 (34.53%), Postives = 70/139 (50.36%), Query Frame = 2
Query:  149 DVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNV-----SKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVY 550
            ++ + +  CG+C +DLH    +  V    ++PGHE+VG V +VG+ V      +F  GD+VG+  L  +C  C+ C++G EN CP     Y   D D     GGY++   V   +    P        APLLCAGI  Y
Sbjct:   40 ELLVAVHACGVCRTDLHVTEGDLPVHRERVIPGHEVVGEVIEVGSAVGAAAGGEFDRGDRVGIAWLRHTCGVCKYCRRGSENLCPQS--RYTGWDAD-----GGYAEFTTVPAAFAHHLPSGYSDSELAPLLCAGIIGY 171          
BLAST of FC920278 vs. ExPASy Swiss-Prot
Match: ADHP_ECOLI (Alcohol dehydrogenase, propanol-preferring OS=Escherichia coli (strain K12) GN=adhP PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.443e-17
Identity = 43/138 (31.16%), Postives = 67/138 (48.55%), Query Frame = 2
Query:  149 DVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMK 562
            +  +K+  CG+CH+DLH    ++G     ++ GHE +G V +VG  V+  K GD+  V      C  CE C  G E  C        S+   G    GG ++  +V   Y ++ PD +   A + + CAG+T Y  +K
Sbjct:   26 EALLKMECCGVCHTDLHVKNGDFG-DKTGVILGHEGIGVVAEVGPGVTSLKPGDRASVAWFYEGCGHCEYCNSGNETLC-------RSVKNAGYSVDGGMAEECIVVADYAVKVPDGLDSAAASSITCAGVTTYKAVK 155          
BLAST of FC920278 vs. ExPASy Swiss-Prot
Match: ADH_STAAW (Alcohol dehydrogenase OS=Staphylococcus aureus (strain MW2) GN=adh PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.190e-16
Identity = 42/139 (30.22%), Postives = 71/139 (51.08%), Query Frame = 2
Query:  149 DVTIKILFCGICHSDLHCARNEWG-VTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMK 562
            +  ++  +CG+CH+DLH    ++G VT   +  GHE +G V +V  +V   K GD+V +  +  SC +CE C  G E  C        S+   G    G  ++ ++V   Y ++ P+ +   A + + CAG+T Y  +K
Sbjct:   26 EALVQTEYCGVCHTDLHVKNADFGDVTGVTL--GHEGIGKVIEVAEDVESLKIGDRVSIAWMFESCGRCEYCTTGRETLC-------RSVKNAGYTVDGAMAEQVIVTADYAVKVPEKLDPAAASSITCAGVTTYKAVK 155          
BLAST of FC920278 vs. ExPASy Swiss-Prot
Match: ADH_STAAS (Alcohol dehydrogenase OS=Staphylococcus aureus (strain MSSA476) GN=adh PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.190e-16
Identity = 42/139 (30.22%), Postives = 71/139 (51.08%), Query Frame = 2
Query:  149 DVTIKILFCGICHSDLHCARNEWG-VTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMK 562
            +  ++  +CG+CH+DLH    ++G VT   +  GHE +G V +V  +V   K GD+V +  +  SC +CE C  G E  C        S+   G    G  ++ ++V   Y ++ P+ +   A + + CAG+T Y  +K
Sbjct:   26 EALVQTEYCGVCHTDLHVKNADFGDVTGVTL--GHEGIGKVIEVAEDVESLKIGDRVSIAWMFESCGRCEYCTTGRETLC-------RSVKNAGYTVDGAMAEQVIVTADYAVKVPEKLDPAAASSITCAGVTTYKAVK 155          
BLAST of FC920278 vs. ExPASy Swiss-Prot
Match: ADH_STAAR (Alcohol dehydrogenase OS=Staphylococcus aureus (strain MRSA252) GN=adh PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.190e-16
Identity = 42/139 (30.22%), Postives = 71/139 (51.08%), Query Frame = 2
Query:  149 DVTIKILFCGICHSDLHCARNEWG-VTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMK 562
            +  ++  +CG+CH+DLH    ++G VT   +  GHE +G V +V  +V   K GD+V +  +  SC +CE C  G E  C        S+   G    G  ++ ++V   Y ++ P+ +   A + + CAG+T Y  +K
Sbjct:   26 EALVQTEYCGVCHTDLHVKNADFGDVTGVTL--GHEGIGKVIEVAEDVESLKIGDRVSIAWMFESCGRCEYCTTGRETLC-------RSVKNAGYTVDGAMAEQVIVTADYAVKVPEKLDPAAASSITCAGVTTYKAVK 155          
BLAST of FC920278 vs. ExPASy Swiss-Prot
Match: ADH_STAAN (Alcohol dehydrogenase OS=Staphylococcus aureus (strain N315) GN=adh PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.190e-16
Identity = 42/139 (30.22%), Postives = 71/139 (51.08%), Query Frame = 2
Query:  149 DVTIKILFCGICHSDLHCARNEWG-VTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMK 562
            +  ++  +CG+CH+DLH    ++G VT   +  GHE +G V +V  +V   K GD+V +  +  SC +CE C  G E  C        S+   G    G  ++ ++V   Y ++ P+ +   A + + CAG+T Y  +K
Sbjct:   26 EALVQTEYCGVCHTDLHVKNADFGDVTGVTL--GHEGIGKVIEVAEDVESLKIGDRVSIAWMFESCGRCEYCTTGRETLC-------RSVKNAGYTVDGAMAEQVIVTADYAVKVPEKLDPAAASSITCAGVTTYKAVK 155          
BLAST of FC920278 vs. ExPASy Swiss-Prot
Match: ADH_STAAM (Alcohol dehydrogenase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=adh PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.190e-16
Identity = 42/139 (30.22%), Postives = 71/139 (51.08%), Query Frame = 2
Query:  149 DVTIKILFCGICHSDLHCARNEWG-VTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMK 562
            +  ++  +CG+CH+DLH    ++G VT   +  GHE +G V +V  +V   K GD+V +  +  SC +CE C  G E  C        S+   G    G  ++ ++V   Y ++ P+ +   A + + CAG+T Y  +K
Sbjct:   26 EALVQTEYCGVCHTDLHVKNADFGDVTGVTL--GHEGIGKVIEVAEDVESLKIGDRVSIAWMFESCGRCEYCTTGRETLC-------RSVKNAGYTVDGAMAEQVIVTADYAVKVPEKLDPAAASSITCAGVTTYKAVK 155          
The following BLAST results are available for this feature:
BLAST of FC920278 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 120
Match NameE-valueIdentityDescription
ADH2_PICST3.428e-1834.29Alcohol dehydrogenase 2 OS=Pichia stipitis GN=ADH2... [more]
ADH1_CAEEL9.974e-1836.43Alcohol dehydrogenase 1 OS=Caenorhabditis elegans ... [more]
ADH2_CAEEL2.902e-1728.42Alcohol dehydrogenase 2 OS=Caenorhabditis elegans ... [more]
ADHA_MYCTU3.790e-1734.53Probable alcohol dehydrogenase adhA OS=Mycobacteri... [more]
ADHP_ECOLI8.443e-1731.16Alcohol dehydrogenase, propanol-preferring OS=Esch... [more]
ADH_STAAW4.190e-1630.22Alcohol dehydrogenase OS=Staphylococcus aureus (st... [more]
ADH_STAAS4.190e-1630.22Alcohol dehydrogenase OS=Staphylococcus aureus (st... [more]
ADH_STAAR4.190e-1630.22Alcohol dehydrogenase OS=Staphylococcus aureus (st... [more]
ADH_STAAN4.190e-1630.22Alcohol dehydrogenase OS=Staphylococcus aureus (st... [more]
ADH_STAAM4.190e-1630.22Alcohol dehydrogenase OS=Staphylococcus aureus (st... [more]

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Properties
Property NameValue
Genbank descriptionC32006C02EF RVDevelop1 Citrus clementina cDNA clone C32006C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920278 ID=FC920278; Name=FC920278; organism=Citrus clementina; type=EST; length=731bp
GGAGTGAAGGATAAAGGCCAGAGAGAGAGAAAGCATGGCAAAATCACCAG
AAACAGAGCAGCCTCAAAAGGCCATTGGTTGGGCTGCCAGAGACAACACT
GGAACCTTCTCCCCATTCCATTTCTCCAGAAGAGAAACTGGTGCTGATGA
TGTAACTATTAAGATCCTCTTTTGTGGGATTTGCCACTCGGACTTGCATT
GTGCCAGAAATGAATGGGGTGTCACCAATTACCCAATTGTTCCCGGGCAT
GAAATTGTTGGTACTGTGACAAAAGTTGGAAATAACGTGTCAAAATTCAA
AGAGGGTGACAAGGTTGGAGTTGGGGTCTTGGTAGCCTCCTGCCAAAAAT
GTGAAAGCTGTCAGCAGGGCTTGGAGAATTACTGTCCTAATATGATACTT
ACATATAACTCCATTGATCGTGATGGAACAAAAACTTATGGTGGTTACTC
AGATCTGATTGTTGTTGATCAGCATTATGTGCTCCGCTTTCCTGACAACA
TGCCTCTTGATGCGGGTGCACCACTTTTGTGTGCGGGGATCACAGTGTAC
AGCCCAATGAAATATTATGGAATGACTGAGCCAGGCAAGCATTTGGGTGT
AGCAGGACTTGGTGGGCTTGGCCATGTTGCTGTGAAAATTGGCAAGGCCT
TTGGGTTGAAAGTCACCGTCATCAGTACTTCTCCGAAAAAGAGAGTGAAG
CGATCAGCAAACTGGTGCTGATGCATTCCTT
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