FC920285

Overview
NameFC920285
Unique NameFC920285
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15209 contig Ccv1_Contig15209:90..789. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920285 vs. ExPASy Swiss-Prot
Match: RL10_PYRCJ (50S ribosomal protein L10e OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 9.517e-31
Identity = 73/161 (45.34%), Postives = 94/161 (58.39%), Query Frame = 3
Query:   60 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDE-FPFCVHLASWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFP 539
            M  RPARCYR+IK  PY +  +  G P  +I  +D+G         F     L + E+  +  +ALEAAR   +KY+ K+ G   ++LR+ V P HVLR N+ML+ AGADRLQ GMR AFG P G  ARV  GQV+  V  K  +  H +EALRRA  K P
Sbjct:    1 MPARPARCYRRIKGPPYTREEYIHGAPMIQIPKFDMGTTSAAARAAFTMVAKLVAEERGQIRMQALEAARQISSKYLTKYVGDANYYLRLNVVPHHVLRENRMLAMAGADRLQEGMRLAFGSPAGRAARVEPGQVIFYVEFKPEHLAHVKEALRRAASKLP 161          
BLAST of FC920285 vs. ExPASy Swiss-Prot
Match: RL10_PYRAR (50S ribosomal protein L10e OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.616e-30
Identity = 71/158 (44.94%), Postives = 91/158 (57.59%), Query Frame = 3
Query:   69 RPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDE-FPFCVHLASWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFP 539
            RPARCYR+IK  PY +  +  G P  +I  +D+G         FP    L   E+  +  +ALEAAR   +KY+ K+ G   ++LR+ V P HVLR N+ML+ AGADRLQ GMR AFG P G  ARV  GQ+L     K  +  H +EA RRA  K P
Sbjct:    4 RPARCYRRIKGPPYTREEYIHGAPMIQIPKFDMGTTSAAARATFPMVAKLIVEERGQIRMQALEAARQMASKYLTKYVGDANYYLRLNVIPHHVLRENRMLAMAGADRLQEGMRLAFGSPAGRAARVEPGQILFYAEFKPEHLAHIKEAFRRAASKLP 161          
BLAST of FC920285 vs. ExPASy Swiss-Prot
Match: RL10_THENV (50S ribosomal protein L10e OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.723e-30
Identity = 70/158 (44.30%), Postives = 91/158 (57.59%), Query Frame = 3
Query:   69 RPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDE-FPFCVHLASWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFP 539
            RPARCY++IK  PY +  +  G P  +I  +D+G         FP    L   E+  +  +ALEAAR    KY++K+ G   ++LR+   P HVLR N+ML+ AGADRLQ GMR AFG P G  ARV  GQV+     K  +  H +EALRRA  K P
Sbjct:    4 RPARCYKRIKGPPYTREEYIHGAPMIQIPKFDMGTTSAAARAAFPLVAKLVVQERGQIRMQALEAARQMAYKYLSKYVGDANYYLRLEAVPHHVLRENRMLAMAGADRLQEGMRLAFGSPAGRAARVEAGQVIFYAEFKPEHVAHMKEALRRASTKLP 161          
BLAST of FC920285 vs. ExPASy Swiss-Prot
Match: RL10_METJA (50S ribosomal protein L10e OS=Methanocaldococcus jannaschii GN=rpl10e PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.169e-30
Identity = 69/157 (43.95%), Postives = 93/157 (59.24%), Query Frame = 3
Query:   69 RPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLASWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFP 539
            RP RCYR +   PY +  + +GVP PK+  + +G       EFP  V+L +     +   ALEAAR+A NKY+ K  G+  +  ++RV+P  +LR +KM + AGADR+  GMR AFGKP GT ARV  GQ +L+V         A+EALRRA  K P
Sbjct:    5 RPNRCYRDVDKPPYTRKEYVKGVPQPKVVHFIMGNLSA---EFPVKVNLVATRPIQIRHNALEAARVAANKYLTKMCGRMGYKFQIRVYPHQILREHKMATGAGADRISDGMRLAFGKPIGTAARVKEGQAILTVWVNPDKFPAAKEALRRAAMKLP 158          
BLAST of FC920285 vs. ExPASy Swiss-Prot
Match: RL10_META3 (50S ribosomal protein L10e OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.374e-29
Identity = 72/164 (43.90%), Postives = 96/164 (58.54%), Query Frame = 3
Query:   60 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLASWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQK 551
            M  RP++CYR+I    Y + ++ R VP PK+  Y  G   KG D FP  VHL   +   +   ALE+ARI  NKY     G+  +  ++RV+P  VLR NKM S AGADR+  GMR +FGK  GT ARV  GQ ++++     N +HA+EALRR   K P + K
Sbjct:    1 MALRPSKCYREINKPAYTRKKYIRAVPQPKVVHYVNG--NKGGD-FPVEVHLVVKDDIQIRHNALESARIVGNKYTQNKCGRLGYKFQIRVYPHQVLRENKMASGAGADRISDGMRLSFGKAVGTAARVRKGQKIITISTTPENVIHAKEALRRCNMKMPVKCK 161          
BLAST of FC920285 vs. ExPASy Swiss-Prot
Match: RL10_PYRAE (50S ribosomal protein L10e OS=Pyrobaculum aerophilum GN=rpl10e PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.795e-29
Identity = 71/158 (44.94%), Postives = 91/158 (57.59%), Query Frame = 3
Query:   69 RPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGV-DEFPFCVHLASWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFP 539
            RPARCY++IK  PY +  +  G P  +I  +D+G         F     L   E+  +  +ALEAAR   +KY+ K+ G   ++LR+ V P HVLR N+ML+ AGADRLQ GMR AFG P G  ARV  GQVL     K  +  H +EALRRA  K P
Sbjct:    4 RPARCYKRIKGPPYTREEYIHGAPMIQIPKFDMGTTSAAARTAFTMTAKLVVEERGQIRMQALEAARQMASKYLTKYVGDANYYLRLNVVPHHVLRENRMLAMAGADRLQEGMRLAFGSPAGRAARVEPGQVLFYAEFKPEHLPHIKEALRRAASKLP 161          
BLAST of FC920285 vs. ExPASy Swiss-Prot
Match: RL10_PYRIL (50S ribosomal protein L10e OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.344e-29
Identity = 70/158 (44.30%), Postives = 92/158 (58.23%), Query Frame = 3
Query:   69 RPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDE-FPFCVHLASWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFP 539
            RPARCYR+IK  PY +  +  G P  +I  +D+G+        F     L   E+  +  +ALEAAR    KY++K+ G   ++LR+ V P HVLR N+ML+ AGADRLQ GMR AFG P G  ARV  GQV+     +  +  H +EALRRA  K P
Sbjct:    4 RPARCYRRIKGPPYTREEYIHGAPMIQIPKFDMGVTSAAARAAFSMVAKLVVEERGQIRMQALEAARQMAYKYLSKYVGDANYYLRLNVVPHHVLRENRMLAMAGADRLQEGMRLAFGSPAGRAARVEPGQVIFYAEFRPEHIAHIKEALRRAASKLP 161          
BLAST of FC920285 vs. ExPASy Swiss-Prot
Match: RL10_ARCFU (50S ribosomal protein L10e OS=Archaeoglobus fulgidus GN=rpl10e PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.222e-29
Identity = 67/160 (41.88%), Postives = 100/160 (62.50%), Query Frame = 3
Query:   60 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLASWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFP 539
            M R+PAR +R+++ +PY ++ +  G P  ++R++D+G K     +FP  + L + E   +   ALEAAR+  NKY+++ AG   + L++R+ P H+LR +KM   AGADR+  GMR AFGKP G  ARV  G  ++SV  K  +   A+EALRRA  K P
Sbjct:    1 MARKPARMWRRLE-RPYTRTEYIDGAPGTRVRMFDMGNKSA---DFPVMLTLVAKEAVQIRENALEAARVVANKYVSRRAGASNYKLKLRIFPHHILREHKMAVGAGADRISQGMRAAFGKPVGRAARVKPGTKIMSVWVKPEHFEIAKEALRRAAMKMP 156          
BLAST of FC920285 vs. ExPASy Swiss-Prot
Match: RL10_CALMQ (50S ribosomal protein L10e OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.888e-27
Identity = 69/161 (42.86%), Postives = 96/161 (59.63%), Query Frame = 3
Query:   60 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKK-KGVDEFPFCVHLASWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFP 539
            M  RPARCY++IK +PY + ++  G P  +I  +++G  K K  + F     L   E   +   ALEAAR    KY++K      F+L++  +P HV+R NKML+ AGADRLQ GMR AFG P G   ++  G+VL+ V  +D N  HA+EAL RA+ K P
Sbjct:    1 MPLRPARCYKRIK-RPYTRLKYIHGAPYVQIPRFEMGATKAKDRERFTSVAVLRVLEGGQIRVNALEAARQMAYKYLSKVLTDQNFYLKIIKYPHHVIRENKMLAMAGADRLQEGMRLAFGVPTGRAIQIEPGEVLMIVEVEDRNITHAKEALNRARAKLP 160          
BLAST of FC920285 vs. ExPASy Swiss-Prot
Match: RL10_THEAC (50S ribosomal protein L10e OS=Thermoplasma acidophilum GN=rpl10e PE=3 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 6.384e-27
Identity = 67/160 (41.88%), Postives = 96/160 (60.00%), Query Frame = 3
Query:   60 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLASWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFP 539
            M  +PAR Y +I    Y +  F  GVP PKI  +  G +KK   +FP  + L + E   +   ALEAAR++ N+ M + AG D F+L+V  +P HVLR +KM + AGADR+ +GMR AFG+P GT ARV    V++  R  ++++   + ALR+A  K P
Sbjct:    1 MVTKPARMYSRITGPAYTRKEFMGGVPYPKITTFVQGNQKK---DFPIEMRLVAEEPCQIRHTALEAARVSVNRRMTEAAGLDYFYLKVVPYPHHVLREHKMATGAGADRISSGMRAAFGRPVGTAARVYPDDVIMIARTDEAHAKELKTALRKAAIKLP 157          
The following BLAST results are available for this feature:
BLAST of FC920285 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
RL10_PYRCJ9.517e-3145.3450S ribosomal protein L10e OS=Pyrobaculum calidifo... [more]
RL10_PYRAR3.616e-3044.9450S ribosomal protein L10e OS=Pyrobaculum arsenati... [more]
RL10_THENV4.723e-3044.3050S ribosomal protein L10e OS=Thermoproteus neutro... [more]
RL10_METJA6.169e-3043.9550S ribosomal protein L10e OS=Methanocaldococcus j... [more]
RL10_META31.374e-2943.9050S ribosomal protein L10e OS=Methanococcus aeolic... [more]
RL10_PYRAE1.795e-2944.9450S ribosomal protein L10e OS=Pyrobaculum aerophil... [more]
RL10_PYRIL2.344e-2944.3050S ribosomal protein L10e OS=Pyrobaculum islandic... [more]
RL10_ARCFU5.222e-2941.8850S ribosomal protein L10e OS=Archaeoglobus fulgid... [more]
RL10_CALMQ4.888e-2742.8650S ribosomal protein L10e OS=Caldivirga maquiling... [more]
RL10_THEAC6.384e-2741.8850S ribosomal protein L10e OS=Thermoplasma acidoph... [more]

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Properties
Property NameValue
Genbank descriptionC32006C11EF RVDevelop1 Citrus clementina cDNA clone C32006C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920285 ID=FC920285; Name=FC920285; organism=Citrus clementina; type=EST; length=700bp
GCCGGGGACTTTTCTTGGGTTTCTGGTTTAGTTGCTGAATACCTACCAGG
GCTTTCGCCATGGGAAGAAGACCTGCTAGGTGTTATCGCCAGATAAAAAA
TAAGCCGTATCCGAAATCACGCTTTTGTCGTGGTGTGCCTGATCCCAAGA
TCAGGATCTATGATGTTGGAATGAAGAAGAAAGGGGTTGATGAATTCCCT
TTCTGTGTGCACTTGGCGTCTTGGGAAAAGGAGAACGTATCTAGTGAAGC
TCTTGAGGCTGCTCGAATTGCTTGCAACAAATATATGGCCAAGTTTGCCG
GGAAAGATGCTTTCCATTTGCGAGTCCGTGTTCACCCATTCCATGTCTTG
CGTATCAACAAAATGCTTTCATGTGCTGGAGCTGATAGGCTTCAAACTGG
TATGAGGGGTGCTTTCGGTAAACCACAGGGCACTTGTGCTAGAGTTGCCA
TTGGACAGGTCCTCCTGTCAGTTCGCTGCAAGGATAGCAATAGTCTTCAT
GCTCAAGAGGCTCTTCGTCGTGCAAAGTTCAAGTTTCCTGGTCGCCAAAA
AAATCATTGTCAGCAGAAAGTGGGGTTTCACCAAGTTTAGCCGCAGTGAT
TATTTGAGGTTCAAGTCAGAGAACCGTATTGTGCCCGATGGTGTTATGCA
AAGCTTCTTGGATGTCATGGACCTTTGGCGAGTCGCAACCAGGAAGAGCT
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