FC920285

Overview
NameFC920285
Unique NameFC920285
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15209 contig Ccv1_Contig15209:90..789. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920285 vs. ExPASy Swiss-Prot
Match: RL10_THESM (50S ribosomal protein L10e OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.682e-25
Identity = 64/160 (40.00%), Postives = 88/160 (55.00%), Query Frame = 3
Query:   60 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLASWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFP 539
            M  RPA+  R +    Y +  + RG P P+I I+D+G       +F F V L + E   +   ALEAAR   N+Y++K  G+  FH ++RV+PF VLR N M +   ADR   GMR  FGKP G  AR+   Q +L+VR    +   A  A++RA  KFP
Sbjct:    1 MALRPAKIDRYVDKPAYTRREYIRGAPGPRITIFDMG---NPAGDFEFEVSLHTAEPVQIRQNALEAARTQLNRYLSKNVGRSNFHYKIRVYPFQVLRENPMATGRKADRYGNGMRRPFGKPIGLAARLKKDQKILTVRVNKQHLKFALAAMKRASMKFP 157          
BLAST of FC920285 vs. ExPASy Swiss-Prot
Match: RL10_METS5 (50S ribosomal protein L10e OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.503e-25
Identity = 66/162 (40.74%), Postives = 92/162 (56.79%), Query Frame = 3
Query:   60 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLASWEKENVSSEALEAARIACNKYMAKFAGKDA-FHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVA-IGQVLLSVRCKDSNSLHAQEALRRAKFKFP 539
            M  RP RCYR      Y +  +  GVP PKI  + +G  KK  D   F V L + +   +   ALEAAR+   K M    G +  F+L V  +P HV+R NKM++ AGADRLQ GMR +FGKP GT AR+  +G +++++R K  +   A++A + A  K P
Sbjct:    1 MPLRPGRCYRHFSGPAYTRKEYIPGVPQPKITKFTMGDHKKDYD---FEVRLLTKQIGQIRHNALEAARVIALKQMTSMVGNETDFYLYVTKYPHHVIRENKMMAFAGADRLQDGMRLSFGKPIGTAARITKLGDLIMAIRVKKEHLEFAKKAFKVASSKLP 159          
BLAST of FC920285 vs. ExPASy Swiss-Prot
Match: RL10_PYRFU (50S ribosomal protein L10e OS=Pyrococcus furiosus GN=rpl10e PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.575e-25
Identity = 65/160 (40.62%), Postives = 86/160 (53.75%), Query Frame = 3
Query:   60 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLASWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFP 539
            M  RPA+  R +    Y +  + RG P PKI I+D+G       +F F V L + E   +   ALEAAR   N+Y+ K  G+  +H ++RV+PF VLR N M +   ADR   GMR  FGKP G  AR+   Q +LS+R    +   A E  RRA  KFP
Sbjct:    1 MALRPAKIDRYVDKPAYTRREYIRGAPGPKITIFDMG---NPAGDFEFEVSLHTAEPVQIRQNALEAARQQVNRYLQKNVGRSNYHFKIRVYPFQVLRENPMATGRKADRYGNGMRRPFGKPIGLAARLKKDQKILSIRVNRQHLKFAIEGARRAAMKFP 157          
BLAST of FC920285 vs. ExPASy Swiss-Prot
Match: RL10_METLZ (50S ribosomal protein L10e OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.575e-25
Identity = 64/160 (40.00%), Postives = 93/160 (58.13%), Query Frame = 3
Query:   60 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLASWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFP 539
            M R+PAR YR +  K Y +  +  GVP  K+  +D+G      ++FP  +HL + E   +   A+EAARI  N+ + K  G++ FHL++R +P HVLR +K  + AGADR+  GMR AFGK  GT ARVA  Q + +V         A++AL  + +K P
Sbjct:    1 MVRKPARMYRNLAKKAYCRREYMGGVPGLKVVQFDMGNLS---EDFPVAIHLEALEACQIRHTAMEAARINMNRRLMKTVGRNNFHLKIRAYPHHVLREHKQATGAGADRVSEGMRLAFGKAVGTAARVAPRQRVFTVWTTPQYVDQAKDALLHSGYKLP 157          
BLAST of FC920285 vs. ExPASy Swiss-Prot
Match: RL10_SULAC (50S ribosomal protein L10e OS=Sulfolobus acidocaldarius GN=rpl10e PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.975e-25
Identity = 68/166 (40.96%), Postives = 98/166 (59.04%), Query Frame = 3
Query:   60 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLASWEKENVSSEALEAARIACNKYMAK-FAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV-AIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQK 551
            M  RP RCYR+     Y +  +  G+P PKI  + +G       ++ + + L + EK  +   ALEAAR+   KY++K  A +  F L V  +P HV+R NKM++ AGADRLQ GMR +FGKP GT AR+  +G++++ VR K  +   A+EAL+ A  K P R K
Sbjct:    1 MPLRPGRCYRKFSGPAYTRREYIPGIPMPKITKFVMGNVN---GDYDYELRLITTEKGQIRHNALEAARVIALKYLSKKLASEQNFALVVTKYPHHVIRENKMMAFAGADRLQDGMRLSFGKPIGTAARLEKLGELVMYVRVKKEHLEAAKEALKIASSKLPIRTK 163          
BLAST of FC920285 vs. ExPASy Swiss-Prot
Match: RL10_PYRHO (50S ribosomal protein L10e OS=Pyrococcus horikoshii GN=rpl10e PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.975e-25
Identity = 65/160 (40.62%), Postives = 86/160 (53.75%), Query Frame = 3
Query:   60 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLASWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFP 539
            M  RPA+  R +    Y +  + RG P PKI I+D+G       +F F V L + E   +   ALEAAR   N+Y+ K  G+  +H ++RV+PF VLR N M +   ADR   GMR  FGKP G  AR+   Q +LS+R    +   A E  RRA  KFP
Sbjct:    1 MALRPAKIDRYVDKPAYTRREYIRGAPGPKITIFDMG---NPAGDFEFEVALHTAEPVQIRQNALEAARQQVNRYLQKNVGRSNYHFKIRVYPFQVLRENPMATGRKADRYGNGMRRPFGKPIGLAARLKRDQKILSIRVNRQHLKFAIEGARRAAMKFP 157          
BLAST of FC920285 vs. ExPASy Swiss-Prot
Match: RL10_THEGJ (50S ribosomal protein L10e OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.019e-24
Identity = 64/160 (40.00%), Postives = 87/160 (54.37%), Query Frame = 3
Query:   60 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLASWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFP 539
            MG RPA+  R +    Y +  + RG P PKI I+D+G       EF + V L + +   +   ALEA RI  N+Y+ K  G+  +H ++RV+PF VLR N M +   ADR   GMR  FGKP G  ARV   Q +L+V   + +   A  A+ RAK K P
Sbjct:    1 MGLRPAKIDRDVDKPAYTRREYIRGAPGPKITIFDMGNLSA---EFEYEVSLHAEQAMQIRQNALEAIRIQVNRYLQKNVGRSNYHFKIRVYPFQVLRENPMATGRKADRYGNGMRRPFGKPIGLAARVKKDQKILTVWVNEQHLKFALGAMHRAKMKLP 157          
BLAST of FC920285 vs. ExPASy Swiss-Prot
Match: RL10_PICTO (50S ribosomal protein L10e OS=Picrophilus torridus GN=rpl10e PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.019e-24
Identity = 63/160 (39.38%), Postives = 94/160 (58.75%), Query Frame = 3
Query:   60 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLASWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFP 539
            M  +PAR Y +I    Y +  F  GVP PKI  +  G +KK   +F   + L + E   +   ALEAAR++ N+ +   AG D + L++R +P  V+R +KM + AGADR+ +GMR AFG+P GT ARV  GQ+++  R   +N+   ++AL +A  K P
Sbjct:    1 MVTKPARMYTRITGPAYTRKEFMGGVPYPKITTFIQGNQKK---DFEIEMMLVAEEACQIRHTALEAARVSVNRKLLDAAGSDNYFLQIRPYPHQVIREHKMATGAGADRISSGMRAAFGRPVGTAARVYPGQIIMVGRVDRNNAKLLKDALHKASIKLP 157          
BLAST of FC920285 vs. ExPASy Swiss-Prot
Match: RL10_PYRKO (50S ribosomal protein L10e OS=Pyrococcus kodakaraensis GN=rpl10e PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.270e-24
Identity = 64/160 (40.00%), Postives = 86/160 (53.75%), Query Frame = 3
Query:   60 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLASWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFP 539
            MG RPA+  R +    Y +  + RG P PKI I+D+G       EF + V L + +   +   ALEA RI  N+Y+ K  G+  +H ++RV+PF VLR N M +   ADR   GMR  FGKP G  ARV   Q +L+V     +   A  A+ RAK K P
Sbjct:    1 MGLRPAKIDRDVDKPAYTRREYIRGAPGPKITIFDMGNLSA---EFEYEVSLHAEQAMQIRQNALEAIRIQVNRYLQKNVGRSNYHFKIRVYPFQVLRENPMATGRKADRYGNGMRRPFGKPIGLAARVRKDQKILTVWVNGQHLKFALGAMHRAKMKLP 157          
BLAST of FC920285 vs. ExPASy Swiss-Prot
Match: RL10_PYRAB (50S ribosomal protein L10e OS=Pyrococcus abyssi GN=rpl10e PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.270e-24
Identity = 64/160 (40.00%), Postives = 87/160 (54.37%), Query Frame = 3
Query:   60 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLASWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFP 539
            M  RPA+  R +    Y +  + RG P PKI I+D+G    G  EF   +H++  +   +   ALEAAR   N+Y+ K  G+  +H ++RV+PF VLR N M +   ADR   GMR  FGKP G  AR+   Q +LS+R    +   A E  RRA  KFP
Sbjct:    1 MALRPAKIDRYVDKPAYTRREYIRGAPGPKITIFDMG-NPAGDFEFEVALHVS--QPVQIRQNALEAARQQVNRYLQKNVGRSNYHFKIRVYPFQVLRENPMATGRKADRYGNGMRRPFGKPIGLAARLKKDQKVLSIRVNRQHLKFAIEGARRAAMKFP 157          
The following BLAST results are available for this feature:
BLAST of FC920285 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
RL10_THESM2.682e-2540.0050S ribosomal protein L10e OS=Thermococcus sibiric... [more]
RL10_METS53.503e-2540.7450S ribosomal protein L10e OS=Metallosphaera sedul... [more]
RL10_PYRFU4.575e-2540.6350S ribosomal protein L10e OS=Pyrococcus furiosus ... [more]
RL10_METLZ4.575e-2540.0050S ribosomal protein L10e OS=Methanocorpusculum l... [more]
RL10_SULAC5.975e-2540.9650S ribosomal protein L10e OS=Sulfolobus acidocald... [more]
RL10_PYRHO5.975e-2540.6350S ribosomal protein L10e OS=Pyrococcus horikoshi... [more]
RL10_THEGJ1.019e-2440.0050S ribosomal protein L10e OS=Thermococcus gammato... [more]
RL10_PICTO1.019e-2439.3850S ribosomal protein L10e OS=Picrophilus torridus... [more]
RL10_PYRKO2.270e-2440.0050S ribosomal protein L10e OS=Pyrococcus kodakarae... [more]
RL10_PYRAB2.270e-2440.0050S ribosomal protein L10e OS=Pyrococcus abyssi GN... [more]

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Properties
Property NameValue
Genbank descriptionC32006C11EF RVDevelop1 Citrus clementina cDNA clone C32006C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920285 ID=FC920285; Name=FC920285; organism=Citrus clementina; type=EST; length=700bp
GCCGGGGACTTTTCTTGGGTTTCTGGTTTAGTTGCTGAATACCTACCAGG
GCTTTCGCCATGGGAAGAAGACCTGCTAGGTGTTATCGCCAGATAAAAAA
TAAGCCGTATCCGAAATCACGCTTTTGTCGTGGTGTGCCTGATCCCAAGA
TCAGGATCTATGATGTTGGAATGAAGAAGAAAGGGGTTGATGAATTCCCT
TTCTGTGTGCACTTGGCGTCTTGGGAAAAGGAGAACGTATCTAGTGAAGC
TCTTGAGGCTGCTCGAATTGCTTGCAACAAATATATGGCCAAGTTTGCCG
GGAAAGATGCTTTCCATTTGCGAGTCCGTGTTCACCCATTCCATGTCTTG
CGTATCAACAAAATGCTTTCATGTGCTGGAGCTGATAGGCTTCAAACTGG
TATGAGGGGTGCTTTCGGTAAACCACAGGGCACTTGTGCTAGAGTTGCCA
TTGGACAGGTCCTCCTGTCAGTTCGCTGCAAGGATAGCAATAGTCTTCAT
GCTCAAGAGGCTCTTCGTCGTGCAAAGTTCAAGTTTCCTGGTCGCCAAAA
AAATCATTGTCAGCAGAAAGTGGGGTTTCACCAAGTTTAGCCGCAGTGAT
TATTTGAGGTTCAAGTCAGAGAACCGTATTGTGCCCGATGGTGTTATGCA
AAGCTTCTTGGATGTCATGGACCTTTGGCGAGTCGCAACCAGGAAGAGCT
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