FC920285
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC920285 vs. ExPASy Swiss-Prot
Match: RL10_THESM (50S ribosomal protein L10e OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rpl10e PE=3 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 2.682e-25 Identity = 64/160 (40.00%), Postives = 88/160 (55.00%), Query Frame = 3 Query: 60 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLASWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFP 539 M RPA+ R + Y + + RG P P+I I+D+G +F F V L + E + ALEAAR N+Y++K G+ FH ++RV+PF VLR N M + ADR GMR FGKP G AR+ Q +L+VR + A A++RA KFP Sbjct: 1 MALRPAKIDRYVDKPAYTRREYIRGAPGPRITIFDMG---NPAGDFEFEVSLHTAEPVQIRQNALEAARTQLNRYLSKNVGRSNFHYKIRVYPFQVLRENPMATGRKADRYGNGMRRPFGKPIGLAARLKKDQKILTVRVNKQHLKFALAAMKRASMKFP 157
BLAST of FC920285 vs. ExPASy Swiss-Prot
Match: RL10_METS5 (50S ribosomal protein L10e OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rpl10e PE=3 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 3.503e-25 Identity = 66/162 (40.74%), Postives = 92/162 (56.79%), Query Frame = 3 Query: 60 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLASWEKENVSSEALEAARIACNKYMAKFAGKDA-FHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVA-IGQVLLSVRCKDSNSLHAQEALRRAKFKFP 539 M RP RCYR Y + + GVP PKI + +G KK D F V L + + + ALEAAR+ K M G + F+L V +P HV+R NKM++ AGADRLQ GMR +FGKP GT AR+ +G +++++R K + A++A + A K P Sbjct: 1 MPLRPGRCYRHFSGPAYTRKEYIPGVPQPKITKFTMGDHKKDYD---FEVRLLTKQIGQIRHNALEAARVIALKQMTSMVGNETDFYLYVTKYPHHVIRENKMMAFAGADRLQDGMRLSFGKPIGTAARITKLGDLIMAIRVKKEHLEFAKKAFKVASSKLP 159
BLAST of FC920285 vs. ExPASy Swiss-Prot
Match: RL10_PYRFU (50S ribosomal protein L10e OS=Pyrococcus furiosus GN=rpl10e PE=3 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 4.575e-25 Identity = 65/160 (40.62%), Postives = 86/160 (53.75%), Query Frame = 3 Query: 60 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLASWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFP 539 M RPA+ R + Y + + RG P PKI I+D+G +F F V L + E + ALEAAR N+Y+ K G+ +H ++RV+PF VLR N M + ADR GMR FGKP G AR+ Q +LS+R + A E RRA KFP Sbjct: 1 MALRPAKIDRYVDKPAYTRREYIRGAPGPKITIFDMG---NPAGDFEFEVSLHTAEPVQIRQNALEAARQQVNRYLQKNVGRSNYHFKIRVYPFQVLRENPMATGRKADRYGNGMRRPFGKPIGLAARLKKDQKILSIRVNRQHLKFAIEGARRAAMKFP 157
BLAST of FC920285 vs. ExPASy Swiss-Prot
Match: RL10_METLZ (50S ribosomal protein L10e OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpl10e PE=3 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 4.575e-25 Identity = 64/160 (40.00%), Postives = 93/160 (58.13%), Query Frame = 3 Query: 60 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLASWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFP 539 M R+PAR YR + K Y + + GVP K+ +D+G ++FP +HL + E + A+EAARI N+ + K G++ FHL++R +P HVLR +K + AGADR+ GMR AFGK GT ARVA Q + +V A++AL + +K P Sbjct: 1 MVRKPARMYRNLAKKAYCRREYMGGVPGLKVVQFDMGNLS---EDFPVAIHLEALEACQIRHTAMEAARINMNRRLMKTVGRNNFHLKIRAYPHHVLREHKQATGAGADRVSEGMRLAFGKAVGTAARVAPRQRVFTVWTTPQYVDQAKDALLHSGYKLP 157
BLAST of FC920285 vs. ExPASy Swiss-Prot
Match: RL10_SULAC (50S ribosomal protein L10e OS=Sulfolobus acidocaldarius GN=rpl10e PE=3 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 5.975e-25 Identity = 68/166 (40.96%), Postives = 98/166 (59.04%), Query Frame = 3 Query: 60 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLASWEKENVSSEALEAARIACNKYMAK-FAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV-AIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQK 551 M RP RCYR+ Y + + G+P PKI + +G ++ + + L + EK + ALEAAR+ KY++K A + F L V +P HV+R NKM++ AGADRLQ GMR +FGKP GT AR+ +G++++ VR K + A+EAL+ A K P R K Sbjct: 1 MPLRPGRCYRKFSGPAYTRREYIPGIPMPKITKFVMGNVN---GDYDYELRLITTEKGQIRHNALEAARVIALKYLSKKLASEQNFALVVTKYPHHVIRENKMMAFAGADRLQDGMRLSFGKPIGTAARLEKLGELVMYVRVKKEHLEAAKEALKIASSKLPIRTK 163
BLAST of FC920285 vs. ExPASy Swiss-Prot
Match: RL10_PYRHO (50S ribosomal protein L10e OS=Pyrococcus horikoshii GN=rpl10e PE=3 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 5.975e-25 Identity = 65/160 (40.62%), Postives = 86/160 (53.75%), Query Frame = 3 Query: 60 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLASWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFP 539 M RPA+ R + Y + + RG P PKI I+D+G +F F V L + E + ALEAAR N+Y+ K G+ +H ++RV+PF VLR N M + ADR GMR FGKP G AR+ Q +LS+R + A E RRA KFP Sbjct: 1 MALRPAKIDRYVDKPAYTRREYIRGAPGPKITIFDMG---NPAGDFEFEVALHTAEPVQIRQNALEAARQQVNRYLQKNVGRSNYHFKIRVYPFQVLRENPMATGRKADRYGNGMRRPFGKPIGLAARLKRDQKILSIRVNRQHLKFAIEGARRAAMKFP 157
BLAST of FC920285 vs. ExPASy Swiss-Prot
Match: RL10_THEGJ (50S ribosomal protein L10e OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl10e PE=3 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 1.019e-24 Identity = 64/160 (40.00%), Postives = 87/160 (54.37%), Query Frame = 3 Query: 60 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLASWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFP 539 MG RPA+ R + Y + + RG P PKI I+D+G EF + V L + + + ALEA RI N+Y+ K G+ +H ++RV+PF VLR N M + ADR GMR FGKP G ARV Q +L+V + + A A+ RAK K P Sbjct: 1 MGLRPAKIDRDVDKPAYTRREYIRGAPGPKITIFDMGNLSA---EFEYEVSLHAEQAMQIRQNALEAIRIQVNRYLQKNVGRSNYHFKIRVYPFQVLRENPMATGRKADRYGNGMRRPFGKPIGLAARVKKDQKILTVWVNEQHLKFALGAMHRAKMKLP 157
BLAST of FC920285 vs. ExPASy Swiss-Prot
Match: RL10_PICTO (50S ribosomal protein L10e OS=Picrophilus torridus GN=rpl10e PE=3 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 1.019e-24 Identity = 63/160 (39.38%), Postives = 94/160 (58.75%), Query Frame = 3 Query: 60 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLASWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFP 539 M +PAR Y +I Y + F GVP PKI + G +KK +F + L + E + ALEAAR++ N+ + AG D + L++R +P V+R +KM + AGADR+ +GMR AFG+P GT ARV GQ+++ R +N+ ++AL +A K P Sbjct: 1 MVTKPARMYTRITGPAYTRKEFMGGVPYPKITTFIQGNQKK---DFEIEMMLVAEEACQIRHTALEAARVSVNRKLLDAAGSDNYFLQIRPYPHQVIREHKMATGAGADRISSGMRAAFGRPVGTAARVYPGQIIMVGRVDRNNAKLLKDALHKASIKLP 157
BLAST of FC920285 vs. ExPASy Swiss-Prot
Match: RL10_PYRKO (50S ribosomal protein L10e OS=Pyrococcus kodakaraensis GN=rpl10e PE=3 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 2.270e-24 Identity = 64/160 (40.00%), Postives = 86/160 (53.75%), Query Frame = 3 Query: 60 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLASWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFP 539 MG RPA+ R + Y + + RG P PKI I+D+G EF + V L + + + ALEA RI N+Y+ K G+ +H ++RV+PF VLR N M + ADR GMR FGKP G ARV Q +L+V + A A+ RAK K P Sbjct: 1 MGLRPAKIDRDVDKPAYTRREYIRGAPGPKITIFDMGNLSA---EFEYEVSLHAEQAMQIRQNALEAIRIQVNRYLQKNVGRSNYHFKIRVYPFQVLRENPMATGRKADRYGNGMRRPFGKPIGLAARVRKDQKILTVWVNGQHLKFALGAMHRAKMKLP 157
BLAST of FC920285 vs. ExPASy Swiss-Prot
Match: RL10_PYRAB (50S ribosomal protein L10e OS=Pyrococcus abyssi GN=rpl10e PE=3 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 2.270e-24 Identity = 64/160 (40.00%), Postives = 87/160 (54.37%), Query Frame = 3 Query: 60 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLASWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFP 539 M RPA+ R + Y + + RG P PKI I+D+G G EF +H++ + + ALEAAR N+Y+ K G+ +H ++RV+PF VLR N M + ADR GMR FGKP G AR+ Q +LS+R + A E RRA KFP Sbjct: 1 MALRPAKIDRYVDKPAYTRREYIRGAPGPKITIFDMG-NPAGDFEFEVALHVS--QPVQIRQNALEAARQQVNRYLQKNVGRSNYHFKIRVYPFQVLRENPMATGRKADRYGNGMRRPFGKPIGLAARLKKDQKVLSIRVNRQHLKFAIEGARRAAMKFP 157 The following BLAST results are available for this feature:
BLAST of FC920285 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 92
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920285 ID=FC920285; Name=FC920285; organism=Citrus clementina; type=EST; length=700bpback to top |