FC920289

Overview
NameFC920289
Unique NameFC920289
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length628
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_BURCM (Phosphoserine aminotransferase OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=serC PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.517e-34
Identity = 70/122 (57.38%), Postives = 89/122 (72.95%), Query Frame = 1
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVICSGKS 618
            RVFNF+AGPA LPE+VL +A  E+ +W GSGMSVMEMSHRGKEF SI E A +DLR LL++P  + +LFLQGG   + A VP+NL       D++VTGSWS K+F EA+K+  P +  SGK+
Sbjct:    2 RVFNFSAGPAALPEEVLRQAADEMLDWHGSGMSVMEMSHRGKEFMSIHEAALADLRELLDVPASHRILFLQGGGIAENAIVPMNLLGSRQTADFVVTGSWSQKSFNEAKKYGTPHLAASGKT 123          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_ACIBT (Phosphoserine aminotransferase OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=serC PE=3 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 1.517e-34
Identity = 68/120 (56.67%), Postives = 91/120 (75.83%), Query Frame = 1
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVICSG 612
            R +NF AGPA LP  VL KAQ EL +W+G G+S+MEMSHR  ++ ++ EKAE+DLR L+NIP+ Y VLFLQGGA+ QF+A+PLNL   N+  DYI TG WS+KA KEA+++ +  V+ +G
Sbjct:    2 RAYNFCAGPAALPTAVLEKAQQELLDWQGKGLSIMEMSHRSADYVAVAEKAEADLRKLMNIPENYKVLFLQGGASLQFSAIPLNLLGKNNKADYIHTGIWSEKALKEAKRYGDINVVEAG 121          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_ACIBC (Phosphoserine aminotransferase OS=Acinetobacter baumannii (strain ACICU) GN=serC PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.517e-34
Identity = 68/120 (56.67%), Postives = 91/120 (75.83%), Query Frame = 1
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVICSG 612
            R +NF AGPA LP  VL KAQ EL +W+G G+S+MEMSHR  ++ ++ EKAE+DLR L+NIP+ Y VLFLQGGA+ QF+A+PLNL   N+  DYI TG WS+KA KEA+++ +  V+ +G
Sbjct:    2 RAYNFCAGPAALPTAVLEKAQQELLDWQGKGLSIMEMSHRSADYVAVAEKAEADLRKLMNIPENYKVLFLQGGASLQFSAIPLNLLGKNNKADYIHTGIWSEKALKEAKRYGDINVVEAG 121          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_ACIB5 (Phosphoserine aminotransferase OS=Acinetobacter baumannii (strain AB0057) GN=serC PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.517e-34
Identity = 68/120 (56.67%), Postives = 91/120 (75.83%), Query Frame = 1
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVICSG 612
            R +NF AGPA LP  VL KAQ EL +W+G G+S+MEMSHR  ++ ++ EKAE+DLR L+NIP+ Y VLFLQGGA+ QF+A+PLNL   N+  DYI TG WS+KA KEA+++ +  V+ +G
Sbjct:    2 RAYNFCAGPAALPTAVLEKAQQELLDWQGKGLSIMEMSHRSADYVAVAEKAEADLRKLMNIPENYKVLFLQGGASLQFSAIPLNLLGKNNKADYIHTGIWSEKALKEAKRYGDINVVEAG 121          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_ACIB3 (Phosphoserine aminotransferase OS=Acinetobacter baumannii (strain AB307-0294) GN=serC PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.517e-34
Identity = 68/120 (56.67%), Postives = 91/120 (75.83%), Query Frame = 1
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVICSG 612
            R +NF AGPA LP  VL KAQ EL +W+G G+S+MEMSHR  ++ ++ EKAE+DLR L+NIP+ Y VLFLQGGA+ QF+A+PLNL   N+  DYI TG WS+KA KEA+++ +  V+ +G
Sbjct:    2 RAYNFCAGPAALPTAVLEKAQQELLDWQGKGLSIMEMSHRSADYVAVAEKAEADLRKLMNIPENYKVLFLQGGASLQFSAIPLNLLGKNNKADYIHTGIWSEKALKEAKRYGDINVVEAG 121          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_PSEE4 (Phosphoserine aminotransferase OS=Pseudomonas entomophila (strain L48) GN=serC PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.981e-34
Identity = 70/125 (56.00%), Postives = 89/125 (71.20%), Query Frame = 1
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVICSGKS*KY 627
            R FNF AGPA LP+ VL +AQ+E+ +WRG G+SVMEMSHR  ++ +I EKAE DLR LL++P  Y VLFLQGGA+ QFA +PLNL   N   DY+ TG WS KA +EA++F +  V  S K+  Y
Sbjct:    4 RAFNFCAGPAALPDAVLQRAQAEMLDWRGKGLSVMEMSHRSDDYVAIAEKAEQDLRDLLSVPSNYKVLFLQGGASQQFAEIPLNLLPENGVADYVETGIWSKKAIEEARRFGSVNVAASAKAYDY 128          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_POLNA (Phosphoserine aminotransferase OS=Polaromonas naphthalenivorans (strain CJ2) GN=serC PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.981e-34
Identity = 69/122 (56.56%), Postives = 93/122 (76.23%), Query Frame = 1
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVICSGKS 618
            R FNF+AGPANLPE+VL +A +E+ +W GSGMSVMEMSHRGKEF SI E AE+D R L+ IP+ + +LF+QGG   + A VPLN+ +     D++VTGSWSDK+ KEA+K+C+ Q+  + +S
Sbjct:    3 RPFNFSAGPANLPEEVLRQAAAEMLDWHGSGMSVMEMSHRGKEFISIYEHAEADFRELMEIPEHFKILFMQGGGLAENAIVPLNI-SRGGLADFVVTGSWSDKSQKEARKYCDVQIAATNES 123          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_BURA4 (Phosphoserine aminotransferase OS=Burkholderia ambifaria (strain MC40-6) GN=serC PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.981e-34
Identity = 70/122 (57.38%), Postives = 89/122 (72.95%), Query Frame = 1
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVICSGKS 618
            RVFNF+AGPA LPE+VL +A  E+ +W GSGMSVMEMSHRGKEF SI E A +DLR LL++P  + +LFLQGG   + A VP+NL       D++VTGSWS K+F EA+K+  P +  SGK+
Sbjct:    2 RVFNFSAGPAALPEEVLRQAADEMLDWHGSGMSVMEMSHRGKEFMSIHEAALADLRELLDVPASHRILFLQGGGIAENAIVPMNLLGSRKTADFVVTGSWSQKSFNEAKKYGTPHLAASGKT 123          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_CHRVO (Phosphoserine aminotransferase OS=Chromobacterium violaceum GN=serC PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.587e-34
Identity = 71/121 (58.68%), Postives = 86/121 (71.07%), Query Frame = 1
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVICSGK 615
            +V+NF+AGPA LP +VL +AQSEL +W GSGMSVMEMSHRGKEF  II  AE DLR L+ IP  Y VLFLQGGA+ QFA  PLNL    D +D + TG WS  A KEA+++    V+ S +
Sbjct:    3 KVYNFSAGPAVLPHQVLAEAQSELLDWHGSGMSVMEMSHRGKEFMEIIHDAEQDLRQLMGIPAGYKVLFLQGGASLQFAMAPLNLLGDKDSIDIVNTGHWSKLAIKEAKRYAKVNVVASSE 123          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_PSESM (Phosphoserine aminotransferase OS=Pseudomonas syringae pv. tomato GN=serC PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 4.413e-34
Identity = 74/125 (59.20%), Postives = 84/125 (67.20%), Query Frame = 1
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVICSGKS*KY 627
            R FNF AGPA LPE VLL+AQ+EL +W G G+SVMEMSHR  EF SI  KAE DLR LL+IP  Y VLFLQGGA+ QFA + LNL   N   DYI TG WS KA  EA ++    V  S K+  Y
Sbjct:    4 RAFNFCAGPAALPEAVLLRAQAELLDWHGKGLSVMEMSHRSDEFVSIANKAEQDLRDLLSIPSNYKVLFLQGGASQQFAQIALNLLPENGKADYIDTGIWSQKAIDEASRYGTINVAASAKAYDY 128          
The following BLAST results are available for this feature:
BLAST of FC920289 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 255
Match NameE-valueIdentityDescription
SERC_BURCM1.517e-3457.38Phosphoserine aminotransferase OS=Burkholderia amb... [more]
SERC_ACIBT1.517e-3456.67Phosphoserine aminotransferase OS=Acinetobacter ba... [more]
SERC_ACIBC1.517e-3456.67Phosphoserine aminotransferase OS=Acinetobacter ba... [more]
SERC_ACIB51.517e-3456.67Phosphoserine aminotransferase OS=Acinetobacter ba... [more]
SERC_ACIB31.517e-3456.67Phosphoserine aminotransferase OS=Acinetobacter ba... [more]
SERC_PSEE41.981e-3456.00Phosphoserine aminotransferase OS=Pseudomonas ento... [more]
SERC_POLNA1.981e-3456.56Phosphoserine aminotransferase OS=Polaromonas naph... [more]
SERC_BURA41.981e-3457.38Phosphoserine aminotransferase OS=Burkholderia amb... [more]
SERC_CHRVO2.587e-3458.68Phosphoserine aminotransferase OS=Chromobacterium ... [more]
SERC_PSESM4.413e-3459.20Phosphoserine aminotransferase OS=Pseudomonas syri... [more]

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Properties
Property NameValue
Genbank descriptionC32006D04EF RVDevelop1 Citrus clementina cDNA clone C32006D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920289 ID=FC920289; Name=FC920289; organism=Citrus clementina; type=EST; length=628bp
GAAATAAAGGCACTTGTCTCTCTTTCAACTAGCAGCTGCTAAGCCATGGC
AACGACGACATCATCACCTCACTCACTGTTTCTCCAGAACCGTAATAGCC
ACCCACTCAATAAAAACAATCTCGCATCTTTCACCAACCTTAAAAAGATC
AATTTTTTTAACACCAAAAGAGCCATTTCAGTCACCTGCTCCGCCGCATC
AGCACCAACCCAAGATCGAACGGCGGCCCAGATCCAATCCGGGCAAGAAG
ACCGGGTCTTCAACTTCGCTGCGGGCCCCGCTAATCTCCCGGAGAAAGTT
CTACTCAAGGCCCAATCGGAGCTTTACAACTGGCGCGGATCTGGCATGAG
CGTGATGGAAATGAGCCATAGAGGTAAAGAATTCAAGTCCATTATTGAAA
AAGCTGAATCGGATCTTAGAGCCCTCTTGAATATTCCCCAAGAATATTCT
GTTTTGTTCTTGCAAGGCGGCGCTACGACACAGTTCGCCGCCGTTCCATT
GAATTTGTGTACACCTAATGACCCGGTCGATTATATCGTCACCGGGTCGT
GGAGTGACAAAGCTTTTAAAGAAGCGCAAAAATTTTGCAACCCACAAGTG
ATTTGCTCTGGCAAAAGCTGAAAGTACA
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