FC920289

Overview
NameFC920289
Unique NameFC920289
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length628
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_BAUCH (Phosphoserine aminotransferase OS=Baumannia cicadellinicola subsp. Homalodisca coagulata GN=serC PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.497e-31
Identity = 65/116 (56.03%), Postives = 81/116 (69.83%), Query Frame = 1
Query:  256 VFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVI 603
            VFNF++GPA LP +VL +AQ EL NW G G S+ME+SHR  EF+ +  ++E DLR+LLNIP  Y VLF  GGA  QFAAVP+NL   +   DYI  G WS  A KEA K+C P++I
Sbjct:    4 VFNFSSGPAKLPIEVLQQAQQELCNWHGLGTSIMEISHRSDEFRQVAYESEQDLRSLLNIPDNYQVLFCHGGARAQFAAVPMNLLGKSKIADYIHGGYWSYSAAKEAHKYCQPRMI 119          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_SHIB3 (Phosphoserine aminotransferase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=serC PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 4.567e-31
Identity = 63/116 (54.31%), Postives = 79/116 (68.10%), Query Frame = 1
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQV 600
            ++FNF++GPA LP +VL +AQ EL +W G G SVME+SHRGKEF  + E+AE D R LLN+P  Y VLF  GG   QFAAVPLN+       DY+  G W+  A KEA+K+C P V
Sbjct:    3 QIFNFSSGPAMLPAEVLKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDLLNVPSNYKVLFCHGGGRGQFAAVPLNILGDKTTADYVDAGYWAATAIKEAKKYCTPNV 118          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_PHOLL (Phosphoserine aminotransferase OS=Photorhabdus luminescens subsp. laumondii GN=serC PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 4.567e-31
Identity = 63/118 (53.39%), Postives = 86/118 (72.88%), Query Frame = 1
Query:  250 DRVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVI 603
            ++V+NF++GPA LP +VL +A+ EL NW G G S+ME+SHRGKEF ++ ++AE+DLR LL++P+ Y VLF  GGA  QFAA+P+NL       DYI  G W+  A KEA+K+C P VI
Sbjct:    2 NQVYNFSSGPAMLPVEVLRRAEQELCNWHGIGTSIMEISHRGKEFIAVAKEAENDLRDLLSVPENYKVLFCHGGARGQFAAIPMNLLGDKVKADYIDGGYWAACAVKEAKKYCTPNVI 119          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_KLEP7 (Phosphoserine aminotransferase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=serC PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 4.567e-31
Identity = 64/117 (54.70%), Postives = 79/117 (67.52%), Query Frame = 1
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVI 603
            +V+NF++GPA LP +VL  AQ EL +W G G SVME+SHRGKEF  + E+AE D RALLNIP  Y VLF  GG   QFA +PLN+       DY+  G W+  A KEA+K+C P VI
Sbjct:    3 QVYNFSSGPAMLPAEVLKLAQQELCDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRALLNIPSNYKVLFCHGGGRGQFAGIPLNILGDKKVADYVDAGYWAASAVKEAKKYCTPNVI 119          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_ESCF3 (Phosphoserine aminotransferase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=serC PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 4.567e-31
Identity = 64/116 (55.17%), Postives = 78/116 (67.24%), Query Frame = 1
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQV 600
            +VFNF++GPA LP  VL +AQ EL +W G G SVME+SHRGKEF  + E+AE D R LLN+P  Y VLF  GG   QFAAVPLN+       DY+  G W+  A KEA+K+C P V
Sbjct:    3 QVFNFSSGPAMLPADVLKQAQQELCDWNGLGTSVMEISHRGKEFIKVAEEAEHDFRELLNVPSNYKVLFCHGGGRGQFAAVPLNILGDKTTADYVDAGYWAASAIKEAKKYCTPNV 118          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_ECOUT (Phosphoserine aminotransferase OS=Escherichia coli (strain UTI89 / UPEC) GN=serC PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 4.567e-31
Identity = 63/116 (54.31%), Postives = 79/116 (68.10%), Query Frame = 1
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQV 600
            ++FNF++GPA LP +VL +AQ EL +W G G SVME+SHRGKEF  + E+AE D R LLN+P  Y VLF  GG   QFAAVPLN+       DY+  G W+  A KEA+K+C P V
Sbjct:    3 QIFNFSSGPAMLPAEVLEQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDLLNVPSNYKVLFCHGGGRGQFAAVPLNILGDKTTADYVDAGYWAASAIKEAKKYCTPNV 118          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_ECOK1 (Phosphoserine aminotransferase OS=Escherichia coli O1:K1 / APEC GN=serC PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 4.567e-31
Identity = 63/116 (54.31%), Postives = 79/116 (68.10%), Query Frame = 1
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQV 600
            ++FNF++GPA LP +VL +AQ EL +W G G SVME+SHRGKEF  + E+AE D R LLN+P  Y VLF  GG   QFAAVPLN+       DY+  G W+  A KEA+K+C P V
Sbjct:    3 QIFNFSSGPAMLPAEVLEQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDLLNVPSNYKVLFCHGGGRGQFAAVPLNILGDKTTADYVDAGYWAASAIKEAKKYCTPNV 118          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_ECO5E (Phosphoserine aminotransferase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=serC PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 4.567e-31
Identity = 63/116 (54.31%), Postives = 79/116 (68.10%), Query Frame = 1
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQV 600
            ++FNF++GPA LP +VL +AQ EL +W G G SVME+SHRGKEF  + E+AE D R LLN+P  Y VLF  GG   QFAAVPLN+       DY+  G W+  A KEA+K+C P V
Sbjct:    3 QIFNFSSGPAMLPVEVLKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDLLNVPSNYKVLFCHGGGRGQFAAVPLNILGDKTTADYVDAGYWAASAIKEAKKYCTPNV 118          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_ECO57 (Phosphoserine aminotransferase OS=Escherichia coli O157:H7 GN=serC PE=3 SV=3)

HSP 1 Score: 134.42 bits (337), Expect = 4.567e-31
Identity = 63/116 (54.31%), Postives = 79/116 (68.10%), Query Frame = 1
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQV 600
            ++FNF++GPA LP +VL +AQ EL +W G G SVME+SHRGKEF  + E+AE D R LLN+P  Y VLF  GG   QFAAVPLN+       DY+  G W+  A KEA+K+C P V
Sbjct:    3 QIFNFSSGPAMLPVEVLKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDLLNVPSNYKVLFCHGGGRGQFAAVPLNILGDKTTADYVDAGYWAASAIKEAKKYCTPNV 118          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_ECO45 (Phosphoserine aminotransferase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=serC PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 4.567e-31
Identity = 63/116 (54.31%), Postives = 79/116 (68.10%), Query Frame = 1
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQV 600
            ++FNF++GPA LP +VL +AQ EL +W G G SVME+SHRGKEF  + E+AE D R LLN+P  Y VLF  GG   QFAAVPLN+       DY+  G W+  A KEA+K+C P V
Sbjct:    3 QIFNFSSGPAMLPAEVLEQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDLLNVPSNYKVLFCHGGGRGQFAAVPLNILGDKTTADYVDAGYWAASAIKEAKKYCTPNV 118          
The following BLAST results are available for this feature:
BLAST of FC920289 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 255
Match NameE-valueIdentityDescription
SERC_BAUCH3.497e-3156.03Phosphoserine aminotransferase OS=Baumannia cicade... [more]
SERC_SHIB34.567e-3154.31Phosphoserine aminotransferase OS=Shigella boydii ... [more]
SERC_PHOLL4.567e-3153.39Phosphoserine aminotransferase OS=Photorhabdus lum... [more]
SERC_KLEP74.567e-3154.70Phosphoserine aminotransferase OS=Klebsiella pneum... [more]
SERC_ESCF34.567e-3155.17Phosphoserine aminotransferase OS=Escherichia ferg... [more]
SERC_ECOUT4.567e-3154.31Phosphoserine aminotransferase OS=Escherichia coli... [more]
SERC_ECOK14.567e-3154.31Phosphoserine aminotransferase OS=Escherichia coli... [more]
SERC_ECO5E4.567e-3154.31Phosphoserine aminotransferase OS=Escherichia coli... [more]
SERC_ECO574.567e-3154.31Phosphoserine aminotransferase OS=Escherichia coli... [more]
SERC_ECO454.567e-3154.31Phosphoserine aminotransferase OS=Escherichia coli... [more]

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Properties
Property NameValue
Genbank descriptionC32006D04EF RVDevelop1 Citrus clementina cDNA clone C32006D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920289 ID=FC920289; Name=FC920289; organism=Citrus clementina; type=EST; length=628bp
GAAATAAAGGCACTTGTCTCTCTTTCAACTAGCAGCTGCTAAGCCATGGC
AACGACGACATCATCACCTCACTCACTGTTTCTCCAGAACCGTAATAGCC
ACCCACTCAATAAAAACAATCTCGCATCTTTCACCAACCTTAAAAAGATC
AATTTTTTTAACACCAAAAGAGCCATTTCAGTCACCTGCTCCGCCGCATC
AGCACCAACCCAAGATCGAACGGCGGCCCAGATCCAATCCGGGCAAGAAG
ACCGGGTCTTCAACTTCGCTGCGGGCCCCGCTAATCTCCCGGAGAAAGTT
CTACTCAAGGCCCAATCGGAGCTTTACAACTGGCGCGGATCTGGCATGAG
CGTGATGGAAATGAGCCATAGAGGTAAAGAATTCAAGTCCATTATTGAAA
AAGCTGAATCGGATCTTAGAGCCCTCTTGAATATTCCCCAAGAATATTCT
GTTTTGTTCTTGCAAGGCGGCGCTACGACACAGTTCGCCGCCGTTCCATT
GAATTTGTGTACACCTAATGACCCGGTCGATTATATCGTCACCGGGTCGT
GGAGTGACAAAGCTTTTAAAGAAGCGCAAAAATTTTGCAACCCACAAGTG
ATTTGCTCTGGCAAAAGCTGAAAGTACA
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