FC920289

Overview
NameFC920289
Unique NameFC920289
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length628
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_XYLFA (Phosphoserine aminotransferase OS=Xylella fastidiosa GN=serC PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 5.965e-31
Identity = 63/121 (52.07%), Postives = 79/121 (65.29%), Query Frame = 1
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVICSGK 615
            R+FNF+ GPA LPE VL +AQ E+  W   G SVME+SHR  EF  + +  ESDLR LL +P +Y+VLFL GGATTQ A +PLN   P    DY+VTG WS  A K+A  + N  V+  G+
Sbjct:    4 RIFNFSPGPATLPEPVLRQAQDEMLEWNAVGASVMEISHRTVEFMELAKGIESDLRCLLGVPDDYAVLFLSGGATTQQALLPLNFAAPGQTADYVVTGHWSKTALKQASPYVNINVVADGE 124          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_ENT38 (Phosphoserine aminotransferase OS=Enterobacter sp. (strain 638) GN=serC PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 5.965e-31
Identity = 65/117 (55.56%), Postives = 78/117 (66.67%), Query Frame = 1
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVI 603
            +VFNF++GPA LP  VL +AQ EL +W+G G SVME+SHRGKEF  + E+AE D R LLNIP  Y VLF  GG   QFA +PLNL       DY+  G W+  A KEA K+C P VI
Sbjct:    3 QVFNFSSGPAMLPVDVLKQAQQELCDWQGLGTSVMEISHRGKEFIQVAEEAEKDFRDLLNIPSNYKVLFCHGGGRGQFAGIPLNLLGDKTGADYVDAGYWAASAVKEAHKYCTPNVI 119          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_KLEP3 (Phosphoserine aminotransferase OS=Klebsiella pneumoniae (strain 342) GN=serC PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.017e-30
Identity = 63/117 (53.85%), Postives = 80/117 (68.38%), Query Frame = 1
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVI 603
            +V+NF++GPA LP +VL  AQ EL +W G G SVME+SHRGKEF  + E+AE D R+LLNIP  Y VLF  GG   QFA +PLN+    +  DY+  G W+  A KEA+K+C P VI
Sbjct:    3 QVYNFSSGPAMLPAEVLKLAQQELCDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRSLLNIPSNYKVLFCHGGGRGQFAGIPLNILGDKNVADYVDAGYWAASAVKEAKKYCAPNVI 119          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_DELAS (Phosphoserine aminotransferase OS=Delftia acidovorans (strain DSM 14801 / SPH-1) GN=serC PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.017e-30
Identity = 66/127 (51.97%), Postives = 93/127 (73.23%), Query Frame = 1
Query:  250 DRVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKF-CNPQVICSGKS*KY 627
            +R +NF+AGPA +P +VL +A +E+ +W GSGMSVMEMSHRGKEF SI E+AE+DLR LL +P E+ +LF+QGG   + A VPLNL      VD++++GSWS K+ KEA+K+  +  +  SG+  K+
Sbjct:    2 NRPYNFSAGPAAIPAEVLQQAAAEMLDWHGSGMSVMEMSHRGKEFISIYEQAEADLRELLAVPPEFKILFMQGGGLAENAIVPLNLSRAG-TVDFVLSGSWSQKSAKEARKYVADAHIAASGEDGKF 127          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_COXBN (Phosphoserine aminotransferase OS=Coxiella burnetii (strain Dugway 5J108-111) GN=serC PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.017e-30
Identity = 61/125 (48.80%), Postives = 86/125 (68.80%), Query Frame = 1
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVICSGKS*KY 627
            RV+NF+AGPA +PE+VL   + EL +W G GMS+ E+SHRG+EF  + E+AE DLR LL +P+ Y +LFLQGG+  QFA VP+NL   +    YI +G WS+ A +EA+ +C+P +  + K   Y
Sbjct:    3 RVYNFSAGPAAIPEEVLFTVRDELLDWHGIGMSIAEVSHRGEEFIGVAEEAERDLRELLAVPESYHILFLQGGSRLQFAMVPMNLLANHKKAVYIDSGVWSNLAIREAKNYCDPHLATNAKELNY 127          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_COXB2 (Phosphoserine aminotransferase OS=Coxiella burnetii (strain CbuG_Q212) GN=serC PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.017e-30
Identity = 61/125 (48.80%), Postives = 86/125 (68.80%), Query Frame = 1
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVICSGKS*KY 627
            RV+NF+AGPA +PE+VL   + EL +W G GMS+ E+SHRG+EF  + E+AE DLR LL +P+ Y +LFLQGG+  QFA VP+NL   +    YI +G WS+ A +EA+ +C+P +  + K   Y
Sbjct:    3 RVYNFSAGPAAIPEEVLFTVRDELLDWHGIGMSIAEVSHRGEEFIGVAEEAERDLRELLAVPESYHILFLQGGSRLQFAMVPMNLLANHKKAVYIDSGVWSNLAIREAKNYCDPHLATNAKELNY 127          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_COXB1 (Phosphoserine aminotransferase OS=Coxiella burnetii (strain CbuK_Q154) GN=serC PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.017e-30
Identity = 61/125 (48.80%), Postives = 86/125 (68.80%), Query Frame = 1
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVICSGKS*KY 627
            RV+NF+AGPA +PE+VL   + EL +W G GMS+ E+SHRG+EF  + E+AE DLR LL +P+ Y +LFLQGG+  QFA VP+NL   +    YI +G WS+ A +EA+ +C+P +  + K   Y
Sbjct:    3 RVYNFSAGPAAIPEEVLFTVRDELLDWHGIGMSIAEVSHRGEEFIGVAEEAERDLRELLAVPESYHILFLQGGSRLQFAMVPMNLLANHKKAVYIDSGVWSNLAIREAKNYCDPHLATNAKELNY 127          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_ACIAC (Phosphoserine aminotransferase OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=serC PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.017e-30
Identity = 65/114 (57.02%), Postives = 87/114 (76.32%), Query Frame = 1
Query:  250 DRVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCN 591
            +R +NF+AGPA +P +VL +A SE+ +W GSGM VMEMSHRGKEF SI E+AE+DLR LL +PQ++ +LF+QGG   + A VPLNL +    VD +VTGSWS K+ KEA+K+ +
Sbjct:    2 NRPYNFSAGPAAIPAEVLQQAASEMLDWHGSGMGVMEMSHRGKEFISIYEQAEADLRELLAVPQDFRILFMQGGGLAENAIVPLNL-SRAATVDMVVTGSWSQKSLKEARKYAS 114          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_SHIDS (Phosphoserine aminotransferase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=serC PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.329e-30
Identity = 62/116 (53.45%), Postives = 79/116 (68.10%), Query Frame = 1
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQV 600
            ++FNF++GPA LP +VL +AQ EL +W G G SVME+SHRGKEF  + E+AE D R LL++P  Y VLF  GG   QFAAVPLN+       DY+  G W+  A KEA+K+C P V
Sbjct:    3 QIFNFSSGPAMLPAEVLKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDLLHVPSNYKVLFCHGGGRGQFAAVPLNILGDKTTADYVDAGYWAASAIKEAKKYCTPNV 118          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_CITK8 (Phosphoserine aminotransferase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=serC PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.329e-30
Identity = 63/117 (53.85%), Postives = 80/117 (68.38%), Query Frame = 1
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVI 603
            +VFNF++GPA LP +VL  AQ +L +W G G SVME+SHRGKEF  + E+AE D R LL+IP  Y VLF  GG   QFAA+PLN+       DY+  G W+  A KEA+K+C+P VI
Sbjct:    3 QVFNFSSGPAMLPAEVLKLAQQDLRDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLSIPSNYKVLFCHGGGRGQFAAIPLNILGDKTSADYVDAGYWAASAIKEAKKYCSPNVI 119          
The following BLAST results are available for this feature:
BLAST of FC920289 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 255
Match NameE-valueIdentityDescription
SERC_XYLFA5.965e-3152.07Phosphoserine aminotransferase OS=Xylella fastidio... [more]
SERC_ENT385.965e-3155.56Phosphoserine aminotransferase OS=Enterobacter sp.... [more]
SERC_KLEP31.017e-3053.85Phosphoserine aminotransferase OS=Klebsiella pneum... [more]
SERC_DELAS1.017e-3051.97Phosphoserine aminotransferase OS=Delftia acidovor... [more]
SERC_COXBN1.017e-3048.80Phosphoserine aminotransferase OS=Coxiella burneti... [more]
SERC_COXB21.017e-3048.80Phosphoserine aminotransferase OS=Coxiella burneti... [more]
SERC_COXB11.017e-3048.80Phosphoserine aminotransferase OS=Coxiella burneti... [more]
SERC_ACIAC1.017e-3057.02Phosphoserine aminotransferase OS=Acidovorax avena... [more]
SERC_SHIDS1.329e-3053.45Phosphoserine aminotransferase OS=Shigella dysente... [more]
SERC_CITK81.329e-3053.85Phosphoserine aminotransferase OS=Citrobacter kose... [more]

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Properties
Property NameValue
Genbank descriptionC32006D04EF RVDevelop1 Citrus clementina cDNA clone C32006D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920289 ID=FC920289; Name=FC920289; organism=Citrus clementina; type=EST; length=628bp
GAAATAAAGGCACTTGTCTCTCTTTCAACTAGCAGCTGCTAAGCCATGGC
AACGACGACATCATCACCTCACTCACTGTTTCTCCAGAACCGTAATAGCC
ACCCACTCAATAAAAACAATCTCGCATCTTTCACCAACCTTAAAAAGATC
AATTTTTTTAACACCAAAAGAGCCATTTCAGTCACCTGCTCCGCCGCATC
AGCACCAACCCAAGATCGAACGGCGGCCCAGATCCAATCCGGGCAAGAAG
ACCGGGTCTTCAACTTCGCTGCGGGCCCCGCTAATCTCCCGGAGAAAGTT
CTACTCAAGGCCCAATCGGAGCTTTACAACTGGCGCGGATCTGGCATGAG
CGTGATGGAAATGAGCCATAGAGGTAAAGAATTCAAGTCCATTATTGAAA
AAGCTGAATCGGATCTTAGAGCCCTCTTGAATATTCCCCAAGAATATTCT
GTTTTGTTCTTGCAAGGCGGCGCTACGACACAGTTCGCCGCCGTTCCATT
GAATTTGTGTACACCTAATGACCCGGTCGATTATATCGTCACCGGGTCGT
GGAGTGACAAAGCTTTTAAAGAAGCGCAAAAATTTTGCAACCCACAAGTG
ATTTGCTCTGGCAAAAGCTGAAAGTACA
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