FC920289

Overview
NameFC920289
Unique NameFC920289
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length628
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_PECCP (Phosphoserine aminotransferase OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=serC PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.735e-30
Identity = 64/117 (54.70%), Postives = 78/117 (66.67%), Query Frame = 1
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVI 603
            ++FNF+AGPA LP +VL +A+ EL NW G G SVME+SHR KEF  +  ++E +LR LL IP  Y VLF  GGA  QFAAVPLNL       DYI  G W+  A  EA+K+C P VI
Sbjct:    3 QIFNFSAGPAMLPVEVLRRAEQELCNWNGLGTSVMEISHRSKEFMQVAAESEQNLRDLLKIPSNYKVLFCHGGARAQFAAVPLNLLGERSTADYIDGGYWAHSAVNEAEKYCTPNVI 119          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_MARMS (Phosphoserine aminotransferase OS=Marinomonas sp. (strain MWYL1) GN=serC PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.267e-30
Identity = 63/125 (50.40%), Postives = 87/125 (69.60%), Query Frame = 1
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVICSGKS*KY 627
            RV+NF +GPA LPE VL KAQ+EL +W G+G+SVMEMSHR  EF SI+  A++ L  L+NI  +Y +LF+QGGA+T F+ +P NL    +   ++ TG+WS KA KEA+K+    V+ S K+  Y
Sbjct:    3 RVYNFCSGPAALPEAVLKKAQAELLDWHGAGVSVMEMSHRSSEFMSILASAKARLSRLMNISDDYEILFVQGGASTLFSQIPANLANGFESACFLDTGAWSSKAIKEAKKYTKVNVVGSSKAQNY 127          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_PROMH (Phosphoserine aminotransferase OS=Proteus mirabilis (strain HI4320) GN=serC PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.960e-30
Identity = 62/117 (52.99%), Postives = 80/117 (68.38%), Query Frame = 1
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVI 603
            +V+NF+AGPA LP +VL +A+ EL NW G G SVME+SHR KEF  +  +AE DLR LLN+P+ Y +LF  GGA   FAA+PLNL       DYI  G W+  A  EA+K+C+P +I
Sbjct:    3 QVYNFSAGPAMLPAEVLRRAELELCNWHGLGRSVMEISHRSKEFLEVAHQAEQDLRDLLNVPENYKILFCHGGARGHFAALPLNLLGEKTTADYIDGGYWAKSAADEAEKYCSPNII 119          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_SALAR (Phosphoserine aminotransferase OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=serC PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 3.866e-30
Identity = 64/117 (54.70%), Postives = 78/117 (66.67%), Query Frame = 1
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVI 603
            +VFNF++GPA LP +VL  AQ EL +W   G SVME+SHRGKEF  + E+AE D R LL+IP  Y VLF  GG   QFA VPLNL       DY+  G W+  A KEA+K+C PQ+I
Sbjct:    3 QVFNFSSGPAMLPTEVLKLAQQELRDWHDLGTSVMEISHRGKEFIQVAEEAEQDFRDLLSIPSNYKVLFCHGGGRGQFAGVPLNLLGDRTTADYVDAGYWAASAIKEAKKYCAPQII 119          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_PHOPR (Phosphoserine aminotransferase OS=Photobacterium profundum GN=serC PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 3.866e-30
Identity = 61/118 (51.69%), Postives = 81/118 (68.64%), Query Frame = 1
Query:  250 DRVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVI 603
            ++V+NF AGPA +P +VL K Q EL NW G G SVME+SHR KEF ++ +++E DLR LL+IP  Y VLF  GGA  QFAAVP+NL    +  DY+  G W+  A  EA+K+C+P  +
Sbjct:    2 EKVYNFCAGPAMIPAEVLKKVQEELVNWNGLGTSVMEISHRSKEFLAVAKQSEKDLRELLSIPSNYHVLFCHGGARGQFAAVPMNLLGDANTADYMDGGYWAHSAIAEAKKYCSPNAV 119          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_BLOPB (Phosphoserine aminotransferase OS=Blochmannia pennsylvanicus (strain BPEN) GN=serC PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 3.866e-30
Identity = 60/119 (50.42%), Postives = 90/119 (75.63%), Query Frame = 1
Query:  250 DRVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLC-TPNDPVDYIVTGSWSDKAFKEAQKFCNPQVI 603
            + VFNF+AGPA LP++VL + + ELY+W   G+SV+E+SHR KEF  ++++A+ D+R LL+I + Y VLF  GGA  QF+A+P+NL  T ++ VDYI+TG W+  A  EA+K+C+P++I
Sbjct:    2 NEVFNFSAGPAMLPKQVLRQVKEELYSWNNMGVSVIEISHRSKEFLQLMQEAKQDMRDLLDITENYEVLFCHGGARAQFSAIPMNLLKTSSERVDYIITGYWAYNAAIEAKKYCDPRII 120          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_SERP5 (Phosphoserine aminotransferase OS=Serratia proteamaculans (strain 568) GN=serC PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.049e-30
Identity = 63/117 (53.85%), Postives = 78/117 (66.67%), Query Frame = 1
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVI 603
            +V+NF++GPA LP +VL +A+ EL NW G G SVME+SHR KEF  + +++E DLR LL IP  Y VLF  GGA  QFAA+PLNL       DYI  G W+  A  EAQK+C P  I
Sbjct:    3 QVYNFSSGPAMLPVEVLRRAEQELCNWHGLGTSVMEISHRSKEFIEVAQQSEQDLRDLLKIPSNYKVLFCHGGARAQFAALPLNLLGDKTTADYIDGGYWAHSAITEAQKYCTPNTI 119          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_COXBU (Phosphoserine aminotransferase OS=Coxiella burnetii GN=serC PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.049e-30
Identity = 60/125 (48.00%), Postives = 85/125 (68.00%), Query Frame = 1
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVICSGKS*KY 627
            RV+NF+AGPA +PE+VL   + EL +W G GMS+ E+SHRG+EF  + E+AE DLR LL +P+ Y +LFLQGG+  QF  VP+NL   +    YI +G WS+ A +EA+ +C+P +  + K   Y
Sbjct:    3 RVYNFSAGPAAIPEEVLFTVRDELLDWHGIGMSIAEVSHRGEEFIGVAEEAERDLRELLAVPESYHILFLQGGSRLQFDMVPMNLLANHKKAVYIDSGVWSNLAIREAKNYCDPHLATNAKELNY 127          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_RHOFD (Phosphoserine aminotransferase OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=serC PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 6.595e-30
Identity = 63/129 (48.84%), Postives = 88/129 (68.22%), Query Frame = 1
Query:  250 DRVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDP------VDYIVTGSWSDKAFKEAQKFCNPQVICSGKS 618
            +R +NF+AGPA +P++VL +A +E+ +W GSGMSVMEMSHRG+EF SI E+A  DLR LL +P  + +LF+QGG   + A VPLNL     P       D++VTG WS K+ +EA+K+C   +  S +S
Sbjct:    2 NRPYNFSAGPAAMPQEVLTEAAAEMLDWHGSGMSVMEMSHRGREFVSIYEQAHLDLRELLAVPDSFKILFMQGGGLAENAIVPLNLSARVSPAGAAGSADFVVTGGWSLKSQQEARKYCTVNIAASNES 130          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_MANSM (Phosphoserine aminotransferase OS=Mannheimia succiniciproducens (strain MBEL55E) GN=serC PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 8.613e-30
Identity = 63/110 (57.27%), Postives = 76/110 (69.09%), Query Frame = 1
Query:  256 VFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKF 585
            VFNF+AGPA +P  VL KAQ EL NW+G G SVME+SHRGK F  +I +A+ D R L NIP+ Y +LFLQGGA  QFAA+P+NL        Y+ TG WS  A KEA+ F
Sbjct:    4 VFNFSAGPAMMPPAVLKKAQEELLNWQGQGTSVMEVSHRGKYFMELITQADKDFRELYNIPENYKILFLQGGARGQFAAIPMNLANNKGKALYLNTGHWSATAAKEARNF 113          
The following BLAST results are available for this feature:
BLAST of FC920289 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 255
Match NameE-valueIdentityDescription
SERC_PECCP1.735e-3054.70Phosphoserine aminotransferase OS=Pectobacterium c... [more]
SERC_MARMS2.267e-3050.40Phosphoserine aminotransferase OS=Marinomonas sp. ... [more]
SERC_PROMH2.960e-3052.99Phosphoserine aminotransferase OS=Proteus mirabili... [more]
SERC_SALAR3.866e-3054.70Phosphoserine aminotransferase OS=Salmonella arizo... [more]
SERC_PHOPR3.866e-3051.69Phosphoserine aminotransferase OS=Photobacterium p... [more]
SERC_BLOPB3.866e-3050.42Phosphoserine aminotransferase OS=Blochmannia penn... [more]
SERC_SERP55.049e-3053.85Phosphoserine aminotransferase OS=Serratia proteam... [more]
SERC_COXBU5.049e-3048.00Phosphoserine aminotransferase OS=Coxiella burneti... [more]
SERC_RHOFD6.595e-3048.84Phosphoserine aminotransferase OS=Rhodoferax ferri... [more]
SERC_MANSM8.613e-3057.27Phosphoserine aminotransferase OS=Mannheimia succi... [more]

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Properties
Property NameValue
Genbank descriptionC32006D04EF RVDevelop1 Citrus clementina cDNA clone C32006D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920289 ID=FC920289; Name=FC920289; organism=Citrus clementina; type=EST; length=628bp
GAAATAAAGGCACTTGTCTCTCTTTCAACTAGCAGCTGCTAAGCCATGGC
AACGACGACATCATCACCTCACTCACTGTTTCTCCAGAACCGTAATAGCC
ACCCACTCAATAAAAACAATCTCGCATCTTTCACCAACCTTAAAAAGATC
AATTTTTTTAACACCAAAAGAGCCATTTCAGTCACCTGCTCCGCCGCATC
AGCACCAACCCAAGATCGAACGGCGGCCCAGATCCAATCCGGGCAAGAAG
ACCGGGTCTTCAACTTCGCTGCGGGCCCCGCTAATCTCCCGGAGAAAGTT
CTACTCAAGGCCCAATCGGAGCTTTACAACTGGCGCGGATCTGGCATGAG
CGTGATGGAAATGAGCCATAGAGGTAAAGAATTCAAGTCCATTATTGAAA
AAGCTGAATCGGATCTTAGAGCCCTCTTGAATATTCCCCAAGAATATTCT
GTTTTGTTCTTGCAAGGCGGCGCTACGACACAGTTCGCCGCCGTTCCATT
GAATTTGTGTACACCTAATGACCCGGTCGATTATATCGTCACCGGGTCGT
GGAGTGACAAAGCTTTTAAAGAAGCGCAAAAATTTTGCAACCCACAAGTG
ATTTGCTCTGGCAAAAGCTGAAAGTACA
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