FC920289

Overview
NameFC920289
Unique NameFC920289
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length628
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_VIBCH (Phosphoserine aminotransferase OS=Vibrio cholerae GN=serC PE=3 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 1.125e-29
Identity = 65/117 (55.56%), Postives = 78/117 (66.67%), Query Frame = 1
Query:  250 DRVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQV 600
            D V+NF+AGPA LP+ V+L+AQ+E  NW   G SVME+SHR + F  + E AE DLR LLNIP  Y VLF QGGA  QFAAVPLNL    +   YI  G W+  A KEA+K+C   V
Sbjct:    6 DTVYNFSAGPAALPKAVMLQAQAEFVNWNHLGTSVMEISHRSQPFIQVAEHAERDLRDLLNIPDNYKVLFCQGGARAQFAAVPLNLLGDAETATYIDAGYWAMSAVKEAKKYCTVDV 122          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_RALSO (Phosphoserine aminotransferase OS=Ralstonia solanacearum GN=serC PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.125e-29
Identity = 65/129 (50.39%), Postives = 92/129 (71.32%), Query Frame = 1
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLN----LCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVICSGKS*KY 627
            RV+NF+AGPA LP +VL +A+ E+ +W+GSGMSVMEMSHRG+EF+SI+ +A +DLR LL +P  Y +LFLQGGA  + A VPLN    L       DY+VTG+WS K+ +EA+K+    +  S ++ ++
Sbjct:   14 RVYNFSAGPAVLPTEVLEQAREEMLSWQGSGMSVMEMSHRGREFESIMAQAFADLRELLAVPDNYEILFLQGGAIAENAIVPLNLMRRLSLDAPKADYVVTGTWSVKSQQEARKYGEVNIAASSEAERF 142          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_IDILO (Phosphoserine aminotransferase OS=Idiomarina loihiensis GN=serC PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.125e-29
Identity = 62/111 (55.86%), Postives = 80/111 (72.07%), Query Frame = 1
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKF 585
            ++FNF+AGPA LP  VL +AQ EL NW G G+SVME+SHR   +  +  +AE DLR LLN+P +Y VLFLQGG   QF+AVP N+ +P+  VDY+ TG WS  A +EA+KF
Sbjct:    3 QLFNFSAGPAMLPVDVLKQAQEELLNWNGQGVSVMEISHRDPVYVHMAREAEQDLRDLLNVPDDYEVLFLQGGGRGQFSAVPQNIASPDATVDYLDTGIWSGFAIREAEKF 113          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_DICDI (Probable phosphoserine aminotransferase OS=Dictyostelium discoideum GN=serC PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.469e-29
Identity = 62/116 (53.45%), Postives = 86/116 (74.14%), Query Frame = 1
Query:  247 EDRVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCT--PNDPVDYIVTGSWSDKAFKEAQKFC 588
            E RV NF AGP  +P +VLL+AQ EL N++G G S+ME+SHRGKEF+ +I + +S+L+ LL+I  +Y +LFLQGGA++ FA +P+NLC     D VD+IVTGSWS +A  + + FC
Sbjct:    7 EFRVNNFGAGPGCIPTEVLLEAQKELLNFQGCGKSIMEVSHRGKEFEGVINETKSNLKKLLSISDDYDILFLQGGASSLFAGIPMNLCENGVEDIVDFIVTGSWSKQASNDGKYFC 122          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_EDWI9 (Phosphoserine aminotransferase OS=Edwardsiella ictaluri (strain 93-146) GN=serC PE=3 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 1.919e-29
Identity = 64/119 (53.78%), Postives = 79/119 (66.39%), Query Frame = 1
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDP--VDYIVTGSWSDKAFKEAQKFCNPQVI 603
            +V+NF AGPA LP +VL +A+ EL NW G G SVME+SHRG+ F  +  +AE DLR LL +P +Y +LF  GGA  QFAAVPLNL         DY V G W+  A KEAQ++CNP  I
Sbjct:    3 QVYNFCAGPAMLPVEVLRRAEQELCNWHGLGTSVMEISHRGEAFMQVAAEAEQDLRDLLKVPADYRILFCHGGARGQFAAVPLNLLGSERTARADYAVGGYWAQSAAKEAQRYCNPHAI 121          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_CAEEL (Probable phosphoserine aminotransferase OS=Caenorhabditis elegans GN=F26H9.5 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.919e-29
Identity = 62/113 (54.87%), Postives = 81/113 (71.68%), Query Frame = 1
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCN 591
            R  NFAAGPA LPE+VLLK Q E  N+   G+SV+EMSHR KEF +++ +  S +R L+N+P  + +LF+QGG T QFAA+PLNL   ++  DYIVTG+WS KA  EA K+ N
Sbjct:    6 RKINFAAGPAKLPEEVLLKMQEEQLNFNNLGVSVIEMSHRSKEFGALLNETISLIRELMNVPDNFEILFMQGGGTGQFAAIPLNLKGDHEHADYIVTGAWSSKAADEAGKYIN 118          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_GEOKA (Phosphoserine aminotransferase OS=Geobacillus kaustophilus GN=serC PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.506e-29
Identity = 63/125 (50.40%), Postives = 86/125 (68.80%), Query Frame = 1
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVICSGKS*KY 627
            R +NF AGP+ LP  VL +AQ EL N++ +GMSVME+SHR KE++++   A+  L+ LLN+P  Y +LFLQGGA+ QF+ VP+NL T      Y++TG+WS+KA KEAQK     V+ S K   Y
Sbjct:    3 RAYNFNAGPSALPLPVLERAQKELLNFQNTGMSVMELSHRSKEYEAVHHAAKERLKRLLNVPDGYDILFLQGGASLQFSMVPMNLLTEGKIGCYVLTGAWSEKALKEAQKIGLTTVVASSKEANY 127          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_COXBR (Phosphoserine aminotransferase OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=serC PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.506e-29
Identity = 59/125 (47.20%), Postives = 84/125 (67.20%), Query Frame = 1
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVICSGKS*KY 627
            RV+NF+AGPA +PE+VL   + EL +W G GMS+ E+SHRG+EF  + E+A  DLR LL +P+ Y +LFLQGG+  QF  VP+NL   +    YI +G WS+ A +EA+ +C+P +  + K   Y
Sbjct:    3 RVYNFSAGPAAIPEEVLFTVRDELLDWHGIGMSIAEVSHRGEEFIGVAEEAARDLRELLAVPESYHILFLQGGSRLQFDMVPMNLLANHKKAVYIDSGVWSNLAIREAKNYCDPHLATNAKELNY 127          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_XANCP (Phosphoserine aminotransferase OS=Xanthomonas campestris pv. campestris GN=serC PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.275e-29
Identity = 59/121 (48.76%), Postives = 80/121 (66.12%), Query Frame = 1
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVICSGK 615
            R FNF+AGPA LPE VL +AQ E+  W G G S++E+SHR  +F ++   AE+DLR LL+IP +Y+VLF  GGATT  A +PLN   P   VDY+V+G W   A K+A  + + +V   G+
Sbjct:    3 RAFNFSAGPATLPESVLRQAQEEMVEWNGVGASIVEISHRSADFMAVAAAAEADLRTLLSIPDDYAVLFTSGGATTIQALLPLNFAAPGQAVDYVVSGHWGKTAIKQATPYVDVRVAADGQ 123          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_XANCB (Phosphoserine aminotransferase OS=Xanthomonas campestris pv. campestris (strain B100) GN=serC PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.275e-29
Identity = 59/121 (48.76%), Postives = 80/121 (66.12%), Query Frame = 1
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVICSGK 615
            R FNF+AGPA LPE VL +AQ E+  W G G S++E+SHR  +F ++   AE+DLR LL+IP +Y+VLF  GGATT  A +PLN   P   VDY+V+G W   A K+A  + + +V   G+
Sbjct:    3 RAFNFSAGPATLPESVLRQAQEEMVEWNGVGASIVEISHRSADFMAVAAAAEADLRTLLSIPDDYAVLFTSGGATTIQALLPLNFAAPGQAVDYVVSGHWGKTAIKQATPYVDVRVAADGQ 123          
The following BLAST results are available for this feature:
BLAST of FC920289 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 255
Match NameE-valueIdentityDescription
SERC_VIBCH1.125e-2955.56Phosphoserine aminotransferase OS=Vibrio cholerae ... [more]
SERC_RALSO1.125e-2950.39Phosphoserine aminotransferase OS=Ralstonia solana... [more]
SERC_IDILO1.125e-2955.86Phosphoserine aminotransferase OS=Idiomarina loihi... [more]
SERC_DICDI1.469e-2953.45Probable phosphoserine aminotransferase OS=Dictyos... [more]
SERC_EDWI91.919e-2953.78Phosphoserine aminotransferase OS=Edwardsiella ict... [more]
SERC_CAEEL1.919e-2954.87Probable phosphoserine aminotransferase OS=Caenorh... [more]
SERC_GEOKA2.506e-2950.40Phosphoserine aminotransferase OS=Geobacillus kaus... [more]
SERC_COXBR2.506e-2947.20Phosphoserine aminotransferase OS=Coxiella burneti... [more]
SERC_XANCP4.275e-2948.76Phosphoserine aminotransferase OS=Xanthomonas camp... [more]
SERC_XANCB4.275e-2948.76Phosphoserine aminotransferase OS=Xanthomonas camp... [more]

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Properties
Property NameValue
Genbank descriptionC32006D04EF RVDevelop1 Citrus clementina cDNA clone C32006D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920289 ID=FC920289; Name=FC920289; organism=Citrus clementina; type=EST; length=628bp
GAAATAAAGGCACTTGTCTCTCTTTCAACTAGCAGCTGCTAAGCCATGGC
AACGACGACATCATCACCTCACTCACTGTTTCTCCAGAACCGTAATAGCC
ACCCACTCAATAAAAACAATCTCGCATCTTTCACCAACCTTAAAAAGATC
AATTTTTTTAACACCAAAAGAGCCATTTCAGTCACCTGCTCCGCCGCATC
AGCACCAACCCAAGATCGAACGGCGGCCCAGATCCAATCCGGGCAAGAAG
ACCGGGTCTTCAACTTCGCTGCGGGCCCCGCTAATCTCCCGGAGAAAGTT
CTACTCAAGGCCCAATCGGAGCTTTACAACTGGCGCGGATCTGGCATGAG
CGTGATGGAAATGAGCCATAGAGGTAAAGAATTCAAGTCCATTATTGAAA
AAGCTGAATCGGATCTTAGAGCCCTCTTGAATATTCCCCAAGAATATTCT
GTTTTGTTCTTGCAAGGCGGCGCTACGACACAGTTCGCCGCCGTTCCATT
GAATTTGTGTACACCTAATGACCCGGTCGATTATATCGTCACCGGGTCGT
GGAGTGACAAAGCTTTTAAAGAAGCGCAAAAATTTTGCAACCCACAAGTG
ATTTGCTCTGGCAAAAGCTGAAAGTACA
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