FC920289

Overview
NameFC920289
Unique NameFC920289
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length628
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_XANC8 (Phosphoserine aminotransferase OS=Xanthomonas campestris pv. campestris (strain 8004) GN=serC PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.275e-29
Identity = 59/121 (48.76%), Postives = 80/121 (66.12%), Query Frame = 1
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVICSGK 615
            R FNF+AGPA LPE VL +AQ E+  W G G S++E+SHR  +F ++   AE+DLR LL+IP +Y+VLF  GGATT  A +PLN   P   VDY+V+G W   A K+A  + + +V   G+
Sbjct:    3 RAFNFSAGPATLPESVLRQAQEEMVEWNGVGASIVEISHRSADFMAVAAAAEADLRTLLSIPDDYAVLFTSGGATTIQALLPLNFAAPGQAVDYVVSGHWGKTAIKQATPYVDVRVAADGQ 123          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_LEGPL (Phosphoserine aminotransferase OS=Legionella pneumophila (strain Lens) GN=serC PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.275e-29
Identity = 60/108 (55.56%), Postives = 74/108 (68.52%), Query Frame = 1
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEA 576
            RVFNF AGPA LPE++L +AQ E  NWR +GMS++E+ HR  E  S++  AE  LR LLNIP+ Y VLFL G A TQFA +P+NL  P D   Y +TG WS  A+ EA
Sbjct:    4 RVFNFGAGPAMLPEEILKEAQEEFLNWRNTGMSILEIGHRTPEIISLLSTAEQSLRELLNIPKNYHVLFLGGAARTQFAMIPMNLLRPGDDAAYFITGIWSKMAYHEA 111          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_BACHD (Phosphoserine aminotransferase OS=Bacillus halodurans GN=serC PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.275e-29
Identity = 65/125 (52.00%), Postives = 85/125 (68.00%), Query Frame = 1
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVICSGKS*KY 627
            R +NF AGP+ LP +VL KAQSEL ++  +GMSVME+SHR KE++++   A   LR LLNIP++Y VLFLQGGA+ QFA +PLN        +YI+TGSWS+KA KEA+      +  S K   Y
Sbjct:    3 RAYNFNAGPSALPTEVLEKAQSELLDFENTGMSVMELSHRSKEYENVHHTAAQLLRDLLNIPEDYDVLFLQGGASLQFAMIPLNFLDEGKVANYILTGSWSEKALKEAKFIGKTAIAGSTKESNY 127          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_RALPJ (Phosphoserine aminotransferase OS=Ralstonia pickettii (strain 12J) GN=serC PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 5.583e-29
Identity = 64/129 (49.61%), Postives = 90/129 (69.77%), Query Frame = 1
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLN----LCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVICSGKS*KY 627
            RV+NF+AGPA LP +VL +A+ E+ +W GSGMSVMEMSHRG+EF++I+  A SDLR LL +P  Y +LFLQGGA  + A VPLN    L       DY+VTG+WS K+ +EA+K+    +  + ++ ++
Sbjct:   14 RVYNFSAGPAVLPLEVLEQAKEEMVSWHGSGMSVMEMSHRGREFENILAAAFSDLRQLLAVPDNYEILFLQGGAIAENAIVPLNLMRRLSADAPKADYVVTGTWSVKSQQEARKYGEVNIAATSETERF 142          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_BUCAT (Phosphoserine aminotransferase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain Tuc7) GN=serC PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 5.583e-29
Identity = 59/116 (50.86%), Postives = 81/116 (69.83%), Query Frame = 1
Query:  256 VFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVI 603
            ++NF+AGPA +P  VL +A+ EL+NW+  G S+ME+SHR +EF  +  +AE DLR LL IP  + VLF QGGA  QF+A+P+NL       DYI +G WS+ AF EA+K+C P+ I
Sbjct:    4 IYNFSAGPAMIPRDVLNQAKKELHNWKNLGSSIMEISHRSEEFIQMALEAEKDLRDLLKIPDSFKVLFCQGGARGQFSAIPMNLLNNLQTADYINSGYWSNSAFMEAKKYCTPRSI 119          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_BUCAI (Phosphoserine aminotransferase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=serC PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 5.583e-29
Identity = 59/116 (50.86%), Postives = 81/116 (69.83%), Query Frame = 1
Query:  256 VFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVI 603
            ++NF+AGPA +P  VL +A+ EL+NW+  G S+ME+SHR +EF  +  +AE DLR LL IP  + VLF QGGA  QF+A+P+NL       DYI +G WS+ AF EA+K+C P+ I
Sbjct:    4 IYNFSAGPAMIPRDVLNQAKKELHNWKNLGSSIMEISHRSEEFIQMALEAEKDLRDLLKIPDSFKVLFCQGGARGQFSAIPMNLLNNLQTADYINSGYWSNSAFMEAKKYCTPRSI 119          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_BUCA5 (Phosphoserine aminotransferase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain 5A) GN=serC PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 5.583e-29
Identity = 59/116 (50.86%), Postives = 81/116 (69.83%), Query Frame = 1
Query:  256 VFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVI 603
            ++NF+AGPA +P  VL +A+ EL+NW+  G S+ME+SHR +EF  +  +AE DLR LL IP  + VLF QGGA  QF+A+P+NL       DYI +G WS+ AF EA+K+C P+ I
Sbjct:    4 IYNFSAGPAMIPRDVLNQAKKELHNWKNLGSSIMEISHRSEEFIQMALEAEKDLRDLLKIPDSFKVLFCQGGARGQFSAIPMNLLNNLQTADYINSGYWSNSAFMEAKKYCTPRSI 119          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_RHOBA (Phosphoserine aminotransferase OS=Rhodopirellula baltica GN=serC PE=3 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 9.523e-29
Identity = 61/122 (50.00%), Postives = 85/122 (69.67%), Query Frame = 1
Query:  220 TAAQIQSGQEDRVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDP-VDYIVTGSWSDKAFKEAQK 582
            T+AQ  +   +RVFNF+AGPA +PE VL + Q E+  + G+G S+ME+SHR K F  ++  AES +R LLN+  +YSV+F+QGGAT QF+A+P NL   +     Y++TGSW  KA KEA+K
Sbjct:    4 TSAQSSASHPERVFNFSAGPATMPESVLREVQDEMLCYPGAGASIMEISHRDKLFVDVLHDAESTIRELLNVSDDYSVMFMQGGATLQFSAIPANLLRGSGKRAQYVLTGSWGKKAVKEAKK 125          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_XANAC (Phosphoserine aminotransferase OS=Xanthomonas axonopodis pv. citri GN=serC PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.624e-28
Identity = 56/122 (45.90%), Postives = 81/122 (66.39%), Query Frame = 1
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVICSGKS 618
            R FNF+AGPA LPE VL +AQ+E+  W G G S++E+SHR  +F ++   AE+DLR+LL+IP +Y+VLF  GGATT  A +PLN   P    DY++TG W   A K+A  + + ++    ++
Sbjct:    3 RAFNFSAGPATLPESVLRQAQAEMVEWNGVGASIVEISHRSADFMAVAAAAEADLRSLLSIPDDYAVLFTAGGATTIQALLPLNFAAPGQAADYVITGHWGKTAIKQAATYVDARIAADAQA 124          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_LEGPH (Phosphoserine aminotransferase OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=serC PE=3 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 1.624e-28
Identity = 59/108 (54.63%), Postives = 73/108 (67.59%), Query Frame = 1
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEA 576
            RVFNF AGPA LPE++L +AQ E  NWR +GMS++E+ HR  E  S++  AE  LR LLNIP+ Y VLFL G A  QFA +P+NL  P D   Y +TG WS  A+ EA
Sbjct:    4 RVFNFGAGPAMLPEEILKEAQEEFLNWRNTGMSILEIGHRTPEIISLLSTAEQSLRELLNIPKNYHVLFLGGAARAQFAMIPMNLLRPGDDAAYFITGIWSKMAYHEA 111          
The following BLAST results are available for this feature:
BLAST of FC920289 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 255
Match NameE-valueIdentityDescription
SERC_XANC84.275e-2948.76Phosphoserine aminotransferase OS=Xanthomonas camp... [more]
SERC_LEGPL4.275e-2955.56Phosphoserine aminotransferase OS=Legionella pneum... [more]
SERC_BACHD4.275e-2952.00Phosphoserine aminotransferase OS=Bacillus halodur... [more]
SERC_RALPJ5.583e-2949.61Phosphoserine aminotransferase OS=Ralstonia picket... [more]
SERC_BUCAT5.583e-2950.86Phosphoserine aminotransferase OS=Buchnera aphidic... [more]
SERC_BUCAI5.583e-2950.86Phosphoserine aminotransferase OS=Buchnera aphidic... [more]
SERC_BUCA55.583e-2950.86Phosphoserine aminotransferase OS=Buchnera aphidic... [more]
SERC_RHOBA9.523e-2950.00Phosphoserine aminotransferase OS=Rhodopirellula b... [more]
SERC_XANAC1.624e-2845.90Phosphoserine aminotransferase OS=Xanthomonas axon... [more]
SERC_LEGPH1.624e-2854.63Phosphoserine aminotransferase OS=Legionella pneum... [more]

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Properties
Property NameValue
Genbank descriptionC32006D04EF RVDevelop1 Citrus clementina cDNA clone C32006D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920289 ID=FC920289; Name=FC920289; organism=Citrus clementina; type=EST; length=628bp
GAAATAAAGGCACTTGTCTCTCTTTCAACTAGCAGCTGCTAAGCCATGGC
AACGACGACATCATCACCTCACTCACTGTTTCTCCAGAACCGTAATAGCC
ACCCACTCAATAAAAACAATCTCGCATCTTTCACCAACCTTAAAAAGATC
AATTTTTTTAACACCAAAAGAGCCATTTCAGTCACCTGCTCCGCCGCATC
AGCACCAACCCAAGATCGAACGGCGGCCCAGATCCAATCCGGGCAAGAAG
ACCGGGTCTTCAACTTCGCTGCGGGCCCCGCTAATCTCCCGGAGAAAGTT
CTACTCAAGGCCCAATCGGAGCTTTACAACTGGCGCGGATCTGGCATGAG
CGTGATGGAAATGAGCCATAGAGGTAAAGAATTCAAGTCCATTATTGAAA
AAGCTGAATCGGATCTTAGAGCCCTCTTGAATATTCCCCAAGAATATTCT
GTTTTGTTCTTGCAAGGCGGCGCTACGACACAGTTCGCCGCCGTTCCATT
GAATTTGTGTACACCTAATGACCCGGTCGATTATATCGTCACCGGGTCGT
GGAGTGACAAAGCTTTTAAAGAAGCGCAAAAATTTTGCAACCCACAAGTG
ATTTGCTCTGGCAAAAGCTGAAAGTACA
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