FC920289

Overview
NameFC920289
Unique NameFC920289
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length628
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_LISIN (Phosphoserine aminotransferase OS=Listeria innocua GN=serC PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.053e-27
Identity = 64/117 (54.70%), Postives = 83/117 (70.94%), Query Frame = 1
Query:  250 DRVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQV 600
            +RV+NF+AGPA LP  VL K Q EL ++ GSGMSVME+SHR + F++II+ AES +R L+ IP+ Y VLFLQGGA+ QF  VP+NL      V Y+ TGSW+ KA  EA+K    +V
Sbjct:    2 ERVYNFSAGPAVLPVPVLEKVQRELLSYNGSGMSVMELSHRSELFQNIIDDAESLIRELMGIPENYKVLFLQGGASLQFDMVPMNLANGKKAV-YVNTGSWAKKAISEAKKIQGVEV 117          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_BUCAP (Phosphoserine aminotransferase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=serC PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.053e-27
Identity = 61/116 (52.59%), Postives = 79/116 (68.10%), Query Frame = 1
Query:  256 VFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVI 603
            ++NF+AGPA +P+ VL +A+ EL NW   G S+ME+SHR KEF  +  +AE DLR LLNI   Y +LF QGGA  QFAAVP+NL       DYI +G WS+ A  EA+K+C P+ I
Sbjct:    4 IYNFSAGPAMIPKDVLYQAKKELQNWNQIGCSIMEISHRSKEFIQVALEAEQDLRDLLNISNSYEILFCQGGARGQFAAVPMNLLGNFKETDYINSGYWSNCALIEAKKYCIPKNI 119          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_LYSSC (Phosphoserine aminotransferase OS=Lysinibacillus sphaericus (strain C3-41) GN=serC PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.375e-27
Identity = 61/125 (48.80%), Postives = 84/125 (67.20%), Query Frame = 1
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVICSGKS*KY 627
            R +NF AGP+ LP++VL KAQ +L ++R SGMS+MEMSHR   F  +  +A + L+ L  IP+ Y VLFLQGGA+ QF  VP+N  + +    Y+++GSWS+KAFKEA+ F  P    S K  +Y
Sbjct:    4 RAYNFNAGPSALPQEVLEKAQQQLVDFRDSGMSIMEMSHRSAIFDEVHNEAIALLKKLYAIPENYEVLFLQGGASLQFTMVPMNFLSTDQKASYVLSGSWSEKAFKEAKFFGTPVEAASTKDNQY 128          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_ENTS8 (Phosphoserine aminotransferase OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=serC PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.375e-27
Identity = 61/117 (52.14%), Postives = 76/117 (64.96%), Query Frame = 1
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVI 603
            +V+NF++GPA LP  VL  AQ EL +W+G G SVME+SHR KEF  + E+AE D R LL IP  Y VLF  GG   QF+A+PLNL       DY+  G W+  A KEA+K+  P VI
Sbjct:    3 QVYNFSSGPAMLPADVLRVAQEELRDWQGLGTSVMEISHRSKEFIQVAEQAEQDFRDLLEIPSNYKVLFCHGGGRGQFSALPLNLLGNKTTADYVDGGYWAASAVKEAKKYLTPNVI 119          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_BACAO (Phosphoserine aminotransferase OS=Bacillus alcalophilus GN=serC PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.063e-27
Identity = 59/125 (47.20%), Postives = 85/125 (68.00%), Query Frame = 1
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVICSGKS*KY 627
            +VFNF AGP+ LP+  L +AQ EL N+  + MSVME+SHR + ++ + E+A++ LR LL IP +Y +LFLQGGA+ QF  +P+NL T     +Y++TGSWS+KA KEA+      +  S K+  Y
Sbjct:    4 QVFNFNAGPSALPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGASLQFTMLPMNLLTKGTIGNYVLTGSWSEKALKEAKLLGETHIAASTKANSY 128          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_STRU0 (Phosphoserine aminotransferase OS=Streptococcus uberis (strain ATCC BAA-854 / 0140J) GN=serC PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.001e-27
Identity = 63/109 (57.80%), Postives = 79/109 (72.48%), Query Frame = 1
Query:  256 VFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQK 582
            ++NF+AGPA LP+ VL KAQ+E+ ++R SGMSV+EMSHR KEF +II+ AE  LR L+ IP  Y VLFLQGGA+TQF+ +PLNL        Y V GSW  KA+ EA K
Sbjct:    3 IYNFSAGPAVLPKPVLEKAQAEMLDYRSSGMSVLEMSHRSKEFDAIIKDAEYLLRELMAIPDHYRVLFLQGGASTQFSMIPLNL-AKGKKAYYHVAGSWGKKAYTEAVK 110          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_BLOFL (Phosphoserine aminotransferase OS=Blochmannia floridanus GN=serC PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.001e-27
Identity = 55/118 (46.61%), Postives = 81/118 (68.64%), Query Frame = 1
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPN-DPVDYIVTGSWSDKAFKEAQKFCNPQVI 603
            ++FNF+AGP+ LP++VL + Q ELY+W   G+S+ME+SHR  EF  ++   + +LR LLNIP  Y +LF  GGA  QF+A+P+N    + D +DYI TG W   A  E++K+C+P +I
Sbjct:    3 KIFNFSAGPSMLPKQVLNQIQQELYDWNNLGISIMEISHRSLEFMELVHDTKRNLRNLLNIPNSYEILFCHGGARAQFSAIPMNFLRGSADNIDYINTGYWGYLAAIESKKYCHPNII 120          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_SHESH (Phosphoserine aminotransferase OS=Shewanella sediminis (strain HAW-EB3) GN=serC PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.225e-27
Identity = 59/108 (54.63%), Postives = 76/108 (70.37%), Query Frame = 1
Query:  259 FNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQK 582
            +NF AGPA LP+ V+ KAQSEL +W G G SVME+SHR KEF ++ +KAE+DLR L++IP+ Y VLF+ GG   QF+AV  N    N    Y+V+GSWS  A  EA+K
Sbjct:    5 YNFCAGPAMLPQAVMKKAQSELLDWNGLGTSVMEISHRSKEFIALTDKAETDLRELMSIPENYHVLFMHGGGRGQFSAVVNNFLGENGKALYLVSGSWSKSAVDEARK 112          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_LISMF (Phosphoserine aminotransferase OS=Listeria monocytogenes serotype 4b (strain F2365) GN=serC PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.225e-27
Identity = 62/117 (52.99%), Postives = 82/117 (70.09%), Query Frame = 1
Query:  250 DRVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQV 600
            +RV+NF+AGPA LP  VL K Q EL ++ GSGMSVME+SHR + F++I++ AES +R L+ IP+ Y VLFLQGGA+ QF  VP+NL        Y+ TGSW+ KA  EA+K    +V
Sbjct:    2 ERVYNFSAGPAVLPVPVLEKVQRELLSYNGSGMSVMELSHRSELFQNILDDAESLIRELMEIPENYKVLFLQGGASLQFDMVPMNLAN-GKKAAYVNTGSWAKKAISEAKKIQGVEV 117          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_STRA3 (Phosphoserine aminotransferase OS=Streptococcus agalactiae serotype III GN=serC PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 6.824e-27
Identity = 61/109 (55.96%), Postives = 78/109 (71.56%), Query Frame = 1
Query:  256 VFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQK 582
            ++NF+AGPA LP+ VL+KAQSEL N++GS MSV+E+SHR KEF  II+ AE  LR L+ IP  Y V+FLQGGA+ QF+ +PLN+        Y V GSW  KA+ EA K
Sbjct:    3 IYNFSAGPAVLPKPVLVKAQSELLNYQGSSMSVLEVSHRSKEFDDIIKGAERYLRDLMGIPDNYKVIFLQGGASLQFSMIPLNIARGRKAY-YHVAGSWGKKAYTEAVK 110          
The following BLAST results are available for this feature:
BLAST of FC920289 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 255
Match NameE-valueIdentityDescription
SERC_LISIN1.053e-2754.70Phosphoserine aminotransferase OS=Listeria innocua... [more]
SERC_BUCAP1.053e-2752.59Phosphoserine aminotransferase OS=Buchnera aphidic... [more]
SERC_LYSSC1.375e-2748.80Phosphoserine aminotransferase OS=Lysinibacillus s... [more]
SERC_ENTS81.375e-2752.14Phosphoserine aminotransferase OS=Enterobacter sak... [more]
SERC_BACAO3.063e-2747.20Phosphoserine aminotransferase OS=Bacillus alcalop... [more]
SERC_STRU04.001e-2757.80Phosphoserine aminotransferase OS=Streptococcus ub... [more]
SERC_BLOFL4.001e-2746.61Phosphoserine aminotransferase OS=Blochmannia flor... [more]
SERC_SHESH5.225e-2754.63Phosphoserine aminotransferase OS=Shewanella sedim... [more]
SERC_LISMF5.225e-2752.99Phosphoserine aminotransferase OS=Listeria monocyt... [more]
SERC_STRA36.824e-2755.96Phosphoserine aminotransferase OS=Streptococcus ag... [more]

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Properties
Property NameValue
Genbank descriptionC32006D04EF RVDevelop1 Citrus clementina cDNA clone C32006D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920289 ID=FC920289; Name=FC920289; organism=Citrus clementina; type=EST; length=628bp
GAAATAAAGGCACTTGTCTCTCTTTCAACTAGCAGCTGCTAAGCCATGGC
AACGACGACATCATCACCTCACTCACTGTTTCTCCAGAACCGTAATAGCC
ACCCACTCAATAAAAACAATCTCGCATCTTTCACCAACCTTAAAAAGATC
AATTTTTTTAACACCAAAAGAGCCATTTCAGTCACCTGCTCCGCCGCATC
AGCACCAACCCAAGATCGAACGGCGGCCCAGATCCAATCCGGGCAAGAAG
ACCGGGTCTTCAACTTCGCTGCGGGCCCCGCTAATCTCCCGGAGAAAGTT
CTACTCAAGGCCCAATCGGAGCTTTACAACTGGCGCGGATCTGGCATGAG
CGTGATGGAAATGAGCCATAGAGGTAAAGAATTCAAGTCCATTATTGAAA
AAGCTGAATCGGATCTTAGAGCCCTCTTGAATATTCCCCAAGAATATTCT
GTTTTGTTCTTGCAAGGCGGCGCTACGACACAGTTCGCCGCCGTTCCATT
GAATTTGTGTACACCTAATGACCCGGTCGATTATATCGTCACCGGGTCGT
GGAGTGACAAAGCTTTTAAAGAAGCGCAAAAATTTTGCAACCCACAAGTG
ATTTGCTCTGGCAAAAGCTGAAAGTACA
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