FC920289

Overview
NameFC920289
Unique NameFC920289
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length628
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_PSEU2 (Phosphoserine aminotransferase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=serC PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 9.832e-34
Identity = 74/125 (59.20%), Postives = 84/125 (67.20%), Query Frame = 1
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVICSGKS*KY 627
            R FNF AGPA LPE VLL+AQ+EL +W G G+SVMEMSHR  EF SI  KAE DLR LL+IP  Y VLFLQGGA+ QFA + LNL   N   DYI TG WS KA  EA ++    V  S K+  Y
Sbjct:    4 RAFNFCAGPAALPEAVLLRAQAELLDWHGKGLSVMEMSHRSDEFVSIATKAEQDLRDLLSIPSNYKVLFLQGGASQQFAQIALNLLPENGKADYIDTGIWSQKAIDEASRYGAINVAASAKAYDY 128          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_POLSJ (Phosphoserine aminotransferase OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=serC PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 9.832e-34
Identity = 69/116 (59.48%), Postives = 89/116 (76.72%), Query Frame = 1
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQV 600
            R FNF+AGPANLPE+VL +A +E+ +W GSGMSVMEMSHRGKEF SI E AE+D R L+ IP  + +LF+QGG   + A VPLNL +     D++VTGSWSDK+ KEA+K+C+ Q+
Sbjct:    3 RPFNFSAGPANLPEEVLQQAAAEMLDWHGSGMSVMEMSHRGKEFISIYENAEADFRELMAIPPNFKILFMQGGGLAENAIVPLNL-SRGASADFVVTGSWSDKSQKEARKYCDVQI 117          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_VIBFM (Phosphoserine aminotransferase OS=Vibrio fischeri (strain MJ11) GN=serC PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.284e-33
Identity = 70/118 (59.32%), Postives = 81/118 (68.64%), Query Frame = 1
Query:  250 DRVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVI 603
            ++VFNF AGPA LP  VL +AQ EL NW G G SVME+SHR KEF  + E++E DLR LL IP  Y VLF QGGA  QFAAVPLNL   N   DY+  G W+  A +EAQK+C P VI
Sbjct:    2 EKVFNFCAGPAMLPVDVLAQAQKELVNWNGLGTSVMEISHRSKEFIKVAEESEQDLRDLLAIPSNYKVLFCQGGARAQFAAVPLNLLGGNTKADYVDAGYWAQSAVEEAQKYCTPNVI 119          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_VIBF1 (Phosphoserine aminotransferase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=serC PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.284e-33
Identity = 70/118 (59.32%), Postives = 81/118 (68.64%), Query Frame = 1
Query:  250 DRVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVI 603
            ++VFNF AGPA LP  VL +AQ EL NW G G SVME+SHR KEF  + E++E DLR LL IP  Y VLF QGGA  QFAAVPLNL   N   DY+  G W+  A +EAQK+C P VI
Sbjct:    2 EKVFNFCAGPAMLPVDVLAQAQKELVNWNGLGTSVMEISHRSKEFIKVAEESEQDLRDLLAIPDNYKVLFCQGGARAQFAAVPLNLLGGNTKADYVDAGYWAQSAVEEAQKYCTPNVI 119          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_THIDA (Phosphoserine aminotransferase OS=Thiobacillus denitrificans (strain ATCC 25259) GN=serC PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.284e-33
Identity = 69/120 (57.50%), Postives = 87/120 (72.50%), Query Frame = 1
Query:  256 VFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVICSGK 615
            ++NF+AGPA LP+ VL + Q+EL +W GSGMSVMEMSHRGKEF  I  +AE+DLR L+ IP  Y VLFLQGGA++QFA VP+NL       DY+ TG WS KA KEA+K+    V+ S +
Sbjct:    3 IYNFSAGPAVLPKDVLQQVQAELVDWHGSGMSVMEMSHRGKEFMGIAAEAEADLRELMAIPANYKVLFLQGGASSQFAMVPMNLLRGKASADYLNTGEWSKKAIKEAKKYAAVNVVASSE 122          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_BURS3 (Phosphoserine aminotransferase OS=Burkholderia sp. (strain 383) GN=serC PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.677e-33
Identity = 68/122 (55.74%), Postives = 88/122 (72.13%), Query Frame = 1
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVICSGKS 618
            RVFNF+AGPA +PE+VL +A  E+ +W GSGMSVMEMSHRGKEF SI E A +DLR LL +P  + +LFLQGG   + A VP+NL       D++VTGSWS K+F EA+K+  P +  +GK+
Sbjct:    2 RVFNFSAGPAAMPEEVLRQAADEMLDWHGSGMSVMEMSHRGKEFMSIHEAALTDLRDLLGVPASHRILFLQGGGIAENAIVPMNLLGSRKTADFVVTGSWSQKSFTEAKKYGTPHLAATGKT 123          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_PSEAE (Phosphoserine aminotransferase OS=Pseudomonas aeruginosa GN=serC PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.861e-33
Identity = 70/125 (56.00%), Postives = 87/125 (69.60%), Query Frame = 1
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVICSGKS*KY 627
            R FNF AGPA LP+ VL +AQ+EL +WRG G+SVMEMSHR  ++ +I  KAE DLR LL+IP +Y VLFLQGGA+ QFA +PLNL   +   DYI TG WS KA +EA+++    V  S K   Y
Sbjct:    4 RAFNFCAGPAALPDAVLQRAQAELLDWRGKGLSVMEMSHRSDDYVAIASKAEQDLRDLLDIPSDYKVLFLQGGASQQFAEIPLNLLPEDGVADYIDTGIWSKKAIEEARRYGTVNVAASAKEYDY 128          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_PSEAB (Phosphoserine aminotransferase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=serC PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.861e-33
Identity = 70/125 (56.00%), Postives = 87/125 (69.60%), Query Frame = 1
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVICSGKS*KY 627
            R FNF AGPA LP+ VL +AQ+EL +WRG G+SVMEMSHR  ++ +I  KAE DLR LL+IP +Y VLFLQGGA+ QFA +PLNL   +   DYI TG WS KA +EA+++    V  S K   Y
Sbjct:    4 RAFNFCAGPAALPDAVLQRAQAELLDWRGKGLSVMEMSHRSDDYVAIASKAEQDLRDLLDIPSDYKVLFLQGGASQQFAEIPLNLLPEDGVADYIDTGIWSKKAIEEARRYGTVNVAASAKEYDY 128          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_PSEA8 (Phosphoserine aminotransferase OS=Pseudomonas aeruginosa (strain LESB58) GN=serC PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.861e-33
Identity = 70/125 (56.00%), Postives = 87/125 (69.60%), Query Frame = 1
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVICSGKS*KY 627
            R FNF AGPA LP+ VL +AQ+EL +WRG G+SVMEMSHR  ++ +I  KAE DLR LL+IP +Y VLFLQGGA+ QFA +PLNL   +   DYI TG WS KA +EA+++    V  S K   Y
Sbjct:    4 RAFNFCAGPAALPDAVLQRAQAELLDWRGKGLSVMEMSHRSDDYVAIASKAEQDLRDLLDIPSDYKVLFLQGGASQQFAEIPLNLLPEDGVADYIDTGIWSKKAIEEARRYGTVNVAASAKEYDY 128          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_NITEU (Phosphoserine aminotransferase OS=Nitrosomonas europaea GN=serC PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.861e-33
Identity = 68/122 (55.74%), Postives = 88/122 (72.13%), Query Frame = 1
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVICSGKS 618
            +++NF+AGPA LPE+VL +A+ E+ +W GSGMSVMEMSHRGKEF SI ++ ES LR L  IP  Y VLFLQGGA++QFA VP+NL       DY+ TG WS KA  EA+ + + Q+  S +S
Sbjct:    3 KIYNFSAGPAVLPEEVLEQAREEMLDWHGSGMSVMEMSHRGKEFMSIADETESALRELAGIPDHYKVLFLQGGASSQFAMVPMNLLGKKGKADYVNTGQWSAKAISEAKNYGSVQIAASSES 124          
The following BLAST results are available for this feature:
BLAST of FC920289 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 255
Match NameE-valueIdentityDescription
SERC_PSEU29.832e-3459.20Phosphoserine aminotransferase OS=Pseudomonas syri... [more]
SERC_POLSJ9.832e-3459.48Phosphoserine aminotransferase OS=Polaromonas sp. ... [more]
SERC_VIBFM1.284e-3359.32Phosphoserine aminotransferase OS=Vibrio fischeri ... [more]
SERC_VIBF11.284e-3359.32Phosphoserine aminotransferase OS=Vibrio fischeri ... [more]
SERC_THIDA1.284e-3357.50Phosphoserine aminotransferase OS=Thiobacillus den... [more]
SERC_BURS31.677e-3355.74Phosphoserine aminotransferase OS=Burkholderia sp.... [more]
SERC_PSEAE2.861e-3356.00Phosphoserine aminotransferase OS=Pseudomonas aeru... [more]
SERC_PSEAB2.861e-3356.00Phosphoserine aminotransferase OS=Pseudomonas aeru... [more]
SERC_PSEA82.861e-3356.00Phosphoserine aminotransferase OS=Pseudomonas aeru... [more]
SERC_NITEU2.861e-3355.74Phosphoserine aminotransferase OS=Nitrosomonas eur... [more]

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Properties
Property NameValue
Genbank descriptionC32006D04EF RVDevelop1 Citrus clementina cDNA clone C32006D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920289 ID=FC920289; Name=FC920289; organism=Citrus clementina; type=EST; length=628bp
GAAATAAAGGCACTTGTCTCTCTTTCAACTAGCAGCTGCTAAGCCATGGC
AACGACGACATCATCACCTCACTCACTGTTTCTCCAGAACCGTAATAGCC
ACCCACTCAATAAAAACAATCTCGCATCTTTCACCAACCTTAAAAAGATC
AATTTTTTTAACACCAAAAGAGCCATTTCAGTCACCTGCTCCGCCGCATC
AGCACCAACCCAAGATCGAACGGCGGCCCAGATCCAATCCGGGCAAGAAG
ACCGGGTCTTCAACTTCGCTGCGGGCCCCGCTAATCTCCCGGAGAAAGTT
CTACTCAAGGCCCAATCGGAGCTTTACAACTGGCGCGGATCTGGCATGAG
CGTGATGGAAATGAGCCATAGAGGTAAAGAATTCAAGTCCATTATTGAAA
AAGCTGAATCGGATCTTAGAGCCCTCTTGAATATTCCCCAAGAATATTCT
GTTTTGTTCTTGCAAGGCGGCGCTACGACACAGTTCGCCGCCGTTCCATT
GAATTTGTGTACACCTAATGACCCGGTCGATTATATCGTCACCGGGTCGT
GGAGTGACAAAGCTTTTAAAGAAGCGCAAAAATTTTGCAACCCACAAGTG
ATTTGCTCTGGCAAAAGCTGAAAGTACA
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