FC920289

Overview
NameFC920289
Unique NameFC920289
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length628
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_LACH4 (Phosphoserine aminotransferase OS=Lactobacillus helveticus (strain DPC 4571) GN=serC PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.140e-24
Identity = 51/107 (47.66%), Postives = 76/107 (71.03%), Query Frame = 1
Query:  256 VFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEA 576
            V+NFAAGPA LP+ V+ + Q EL + +GSGMS++E+SHR + F  II+ A+ D++ L+++P  Y +LF QGG T QFAAVP+NL T +  +  + +G W+ +A  EA
Sbjct:    3 VYNFAAGPATLPDPVIKQIQEELPSLQGSGMSILEISHRSQMFDKIIDTAKQDIKDLMHVPDNYHILFFQGGGTGQFAAVPMNLATKHKRIALLDSGHWATRAGDEA 109          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_LACPL (Phosphoserine aminotransferase OS=Lactobacillus plantarum GN=serC PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 7.808e-23
Identity = 51/109 (46.79%), Postives = 75/109 (68.81%), Query Frame = 1
Query:  256 VFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQK 582
            ++NF+AGPA LP+ V+ + Q+EL ++R SGMS++E+SHR   F  +++ AE DLR L+ IP  Y VLF QGG T QF A PLNL  P+  +  + +G W+ +A  EA++
Sbjct:    3 IYNFSAGPAVLPQPVITQIQAELPSFRDSGMSILEISHRSDLFAQVLQDAEQDLRDLMAIPDNYHVLFFQGGGTLQFTAAPLNL-APHHRIGLLDSGHWAQRAADEAKR 110          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_DESOH (Phosphoserine aminotransferase OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=serC PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.272e-22
Identity = 51/109 (46.79%), Postives = 72/109 (66.06%), Query Frame = 1
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQ 579
            R++NF  GPA LP  VL + Q+   ++ G+GMS+ E+SHR K F +II  A + ++ LL I  ++ VLF+QGGA+ QFA VP+NL       DY+ TG+WS KA KE +
Sbjct:    4 RIYNFNPGPAALPLSVLEEIQATFLDFAGTGMSITEVSHRSKPFDAIINDAVTRVKRLLGIGDDFKVLFVQGGASMQFAMVPMNLLPDGKSADYVNTGTWSTKAIKETK 112          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_CAMLR (Phosphoserine aminotransferase OS=Campylobacter lari (strain RM2100 / D67 / ATCC BAA-1060) GN=serC PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.633e-22
Identity = 52/122 (42.62%), Postives = 79/122 (64.75%), Query Frame = 1
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKF-CNPQVICSGK 615
            RV NF+AGP+NLP++VL +AQ  LY++ G G S+ME+SHRGK F+ +  +A    + L  +  +Y VL +QGGA+ QFA +P+NL       ++  TG W+ KA KEA+    N +++ S +
Sbjct:    2 RVMNFSAGPSNLPDEVLKEAQEHLYDYHGKGFSIMEVSHRGKVFEEVHFEAIKMAKELYGVNDDYEVLLMQGGASLQFAMIPMNLYM-GGVCEFANTGVWTKKAIKEAEILGVNTKIVASSQ 122          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_BACFR (Phosphoserine aminotransferase OS=Bacteroides fragilis GN=serC PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.280e-21
Identity = 49/108 (45.37%), Postives = 75/108 (69.44%), Query Frame = 1
Query:  262 NFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKF 585
            NF+AGP+ LP +V+ +    + ++ GSG+SV+E+SHRGK+F++++++A +  + +LNIP+ YSVLFL GGA+ QF  VP N         Y+ TG W+ KA KEA+ F
Sbjct:    5 NFSAGPSILPREVIEETAKAILDFNGSGLSVLEVSHRGKDFQAVMDEAVALFKEILNIPEGYSVLFLGGGASMQFCMVPYNFL--EKKAAYLNTGVWAKKAMKEAKGF 110          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_BACFN (Phosphoserine aminotransferase OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=serC PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.280e-21
Identity = 49/108 (45.37%), Postives = 75/108 (69.44%), Query Frame = 1
Query:  262 NFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKF 585
            NF+AGP+ LP +V+ +    + ++ GSG+SV+E+SHRGK+F++++++A +  + +LNIP+ YSVLFL GGA+ QF  VP N         Y+ TG W+ KA KEA+ F
Sbjct:    5 NFSAGPSILPREVIEETAKAILDFNGSGLSVLEVSHRGKDFQAVMDEAVALFKEILNIPEGYSVLFLGGGASMQFCMVPYNFL--EKKAAYLNTGVWAKKAMKEAKGF 110          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_CAMJD (Phosphoserine aminotransferase OS=Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97) GN=serC PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.284e-21
Identity = 50/109 (45.87%), Postives = 72/109 (66.06%), Query Frame = 1
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQ 579
            R  NF+AGP+ LP ++L +AQ E  +++G G S+ME+SHR K F+ +   A+   + L  +  +Y VLFLQGGA+ QFA +P+NL   N   +Y+ TG W+ KA KEAQ
Sbjct:    2 RKINFSAGPSTLPLEILEQAQKEFCDYQGKGYSIMEISHRTKVFEEVHFGAQEKAKKLYGLNDDYEVLFLQGGASLQFAMIPMNLAL-NGVCEYVNTGVWTKKAIKEAQ 109          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_LACF3 (Phosphoserine aminotransferase OS=Lactobacillus fermentum (strain IFO 3956 / LMG 18251) GN=serC PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.596e-21
Identity = 52/109 (47.71%), Postives = 72/109 (66.06%), Query Frame = 1
Query:  259 FNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNI-PQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQK 582
            +NFAAGPA LP  VL + Q EL +++GS +S++E+SHR   F+ I ++A+  L  L+ +   EY+ LFLQGG T QF  VPLNL   +  V Y  TG WS +A +EA+K
Sbjct:    4 YNFAAGPATLPRPVLEQVQRELLDYQGSQVSILEISHRSPVFREIYQQAKERLLQLMGLSADEYTPLFLQGGGTLQFTMVPLNLARDHHRVAYADTGHWSARAIEEAKK 112          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_CAMJJ (Phosphoserine aminotransferase OS=Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) GN=serC PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.596e-21
Identity = 51/109 (46.79%), Postives = 72/109 (66.06%), Query Frame = 1
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQ 579
            R  NF+AGP+ LP ++L +AQ EL +++G G S+ME+SHR K F+ +   A+   + L  +  +Y VLFLQGGA+ QFA +P+NL   N   +Y  TG W+ KA KEAQ
Sbjct:    2 RKINFSAGPSTLPLEILEQAQKELCDYQGRGYSIMEISHRTKVFEEVHFGAQEKAKKLYGLNDDYEVLFLQGGASLQFAMIPMNLAL-NGVCEYANTGVWTKKAIKEAQ 109          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_CAMJE (Phosphoserine aminotransferase OS=Campylobacter jejuni GN=serC PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.596e-21
Identity = 51/109 (46.79%), Postives = 72/109 (66.06%), Query Frame = 1
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQ 579
            R  NF+AGP+ LP ++L +AQ EL +++G G S+ME+SHR K F+ +   A+   + L  +  +Y VLFLQGGA+ QFA +P+NL   N   +Y  TG W+ KA KEAQ
Sbjct:    2 RKINFSAGPSTLPLEILEQAQKELCDYQGRGYSIMEISHRTKVFEEVHFGAQEKAKKLYELNDDYEVLFLQGGASLQFAMIPMNLAL-NGVCEYANTGVWTKKAIKEAQ 109          
The following BLAST results are available for this feature:
BLAST of FC920289 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 255
Match NameE-valueIdentityDescription
SERC_LACH44.140e-2447.66Phosphoserine aminotransferase OS=Lactobacillus he... [more]
SERC_LACPL7.808e-2346.79Phosphoserine aminotransferase OS=Lactobacillus pl... [more]
SERC_DESOH2.272e-2246.79Phosphoserine aminotransferase OS=Desulfococcus ol... [more]
SERC_CAMLR8.633e-2242.62Phosphoserine aminotransferase OS=Campylobacter la... [more]
SERC_BACFR3.280e-2145.37Phosphoserine aminotransferase OS=Bacteroides frag... [more]
SERC_BACFN3.280e-2145.37Phosphoserine aminotransferase OS=Bacteroides frag... [more]
SERC_CAMJD4.284e-2145.87Phosphoserine aminotransferase OS=Campylobacter je... [more]
SERC_LACF35.596e-2147.71Phosphoserine aminotransferase OS=Lactobacillus fe... [more]
SERC_CAMJJ5.596e-2146.79Phosphoserine aminotransferase OS=Campylobacter je... [more]
SERC_CAMJE5.596e-2146.79Phosphoserine aminotransferase OS=Campylobacter je... [more]

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Properties
Property NameValue
Genbank descriptionC32006D04EF RVDevelop1 Citrus clementina cDNA clone C32006D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920289 ID=FC920289; Name=FC920289; organism=Citrus clementina; type=EST; length=628bp
GAAATAAAGGCACTTGTCTCTCTTTCAACTAGCAGCTGCTAAGCCATGGC
AACGACGACATCATCACCTCACTCACTGTTTCTCCAGAACCGTAATAGCC
ACCCACTCAATAAAAACAATCTCGCATCTTTCACCAACCTTAAAAAGATC
AATTTTTTTAACACCAAAAGAGCCATTTCAGTCACCTGCTCCGCCGCATC
AGCACCAACCCAAGATCGAACGGCGGCCCAGATCCAATCCGGGCAAGAAG
ACCGGGTCTTCAACTTCGCTGCGGGCCCCGCTAATCTCCCGGAGAAAGTT
CTACTCAAGGCCCAATCGGAGCTTTACAACTGGCGCGGATCTGGCATGAG
CGTGATGGAAATGAGCCATAGAGGTAAAGAATTCAAGTCCATTATTGAAA
AAGCTGAATCGGATCTTAGAGCCCTCTTGAATATTCCCCAAGAATATTCT
GTTTTGTTCTTGCAAGGCGGCGCTACGACACAGTTCGCCGCCGTTCCATT
GAATTTGTGTACACCTAATGACCCGGTCGATTATATCGTCACCGGGTCGT
GGAGTGACAAAGCTTTTAAAGAAGCGCAAAAATTTTGCAACCCACAAGTG
ATTTGCTCTGGCAAAAGCTGAAAGTACA
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