FC920289

Overview
NameFC920289
Unique NameFC920289
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length628
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_FLAPJ (Phosphoserine aminotransferase OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=serC PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.167e-18
Identity = 48/123 (39.02%), Postives = 75/123 (60.98%), Query Frame = 1
Query:  262 NFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQE-YSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVICSGKS*KY 627
            N++AGP  LP++V  K+   + ++  SG+S++E+SHR K+F +++E+A + +  LL +  + Y  LFL GGA+ +F  VP NL   N    Y+ TG+W+  A KEA+ F    VI S K   Y
Sbjct:    5 NYSAGPCILPQEVFEKSAQAILDFNHSGLSLLEISHRSKDFVAVMEEARALVLELLGLKGKGYQALFLAGGASLEFLMVPYNLMKENGKAAYLDTGTWASGAIKEAKHFGETVVIASSKEENY 127          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_PORGI (Phosphoserine aminotransferase OS=Porphyromonas gingivalis GN=serC PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.395e-18
Identity = 48/106 (45.28%), Postives = 69/106 (65.09%), Query Frame = 1
Query:  262 NFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQ 579
            NF AGP  L + VL  A S   N+ G+G+SV+E+SHR KEF +++ +A +  + LL++P+ Y VLFL GGA+ QF  VPLNL        +I TG+W+  A K+A+
Sbjct:    5 NFTAGPCILNDLVLKDAASACLNFAGTGLSVLEVSHRDKEFDAVMLEARNLFKELLDVPEGYEVLFLGGGASLQFYQVPLNLL--KKKAAFINTGTWATNAIKQAK 108          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_PORG3 (Phosphoserine aminotransferase OS=Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257) GN=serC PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.395e-18
Identity = 48/106 (45.28%), Postives = 69/106 (65.09%), Query Frame = 1
Query:  262 NFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQ 579
            NF AGP  L + VL  A S   N+ G+G+SV+E+SHR KEF +++ +A +  + LL++P+ Y VLFL GGA+ QF  VPLNL        +I TG+W+  A K+A+
Sbjct:    5 NFTAGPCILNDLVLKDAASACLNFAGTGLSVLEVSHRDKEFDAVMLEARNLFKELLDVPEGYEVLFLGGGASLQFYQVPLNLL--KKKAAFINTGTWATNAIKQAK 108          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_AZOPC (Phosphoserine aminotransferase OS=Azobacteroides pseudotrichonymphae genomovar. CFP2 GN=serC PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 9.877e-18
Identity = 46/109 (42.20%), Postives = 69/109 (63.30%), Query Frame = 1
Query:  259 FNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKF 585
            +NF  GP+ LP++ +      + N+  SG+S+ME+SHR K+F+ +I +     + LL+IP+ YSVLFL GGA+ QF  VP NL        Y+ +G+W+ KA KEA+ F
Sbjct:    4 YNFNPGPSILPQETVNNTARAITNFSNSGLSLMEISHRSKDFQLMINETIVLFKELLSIPEGYSVLFLGGGASLQFCMVPYNLL--ETKAAYLNSGAWASKAIKEARLF 110          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_LEUMM (Phosphoserine aminotransferase OS=Leuconostoc mesenteroides subsp. mesenteroides (strain ATCC 8293 / NCDO 523) GN=serC PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.902e-17
Identity = 43/106 (40.57%), Postives = 66/106 (62.26%), Query Frame = 1
Query:  259 FNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEA 576
            +NF+AGP  LP  VL K ++E      + MS++E+SHR  +F+ II  AE  LR L+NI  +Y V F+QGG +TQF  +PLN     + +  + +G+++ KA + A
Sbjct:    4 YNFSAGPGVLPTPVLTKIKNEFIKNEFTHMSIIEISHRSTQFEEIINSAEERLRDLMNISDDYGVAFIQGGGSTQFEMLPLNFANNKNRIAVLDSGNFASKAAQAA 109          
The following BLAST results are available for this feature:
BLAST of FC920289 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 255
Match NameE-valueIdentityDescription
SERC_FLAPJ1.167e-1839.02Phosphoserine aminotransferase OS=Flavobacterium p... [more]
SERC_PORGI3.395e-1845.28Phosphoserine aminotransferase OS=Porphyromonas gi... [more]
SERC_PORG33.395e-1845.28Phosphoserine aminotransferase OS=Porphyromonas gi... [more]
SERC_AZOPC9.877e-1842.20Phosphoserine aminotransferase OS=Azobacteroides p... [more]
SERC_LEUMM4.902e-1740.57Phosphoserine aminotransferase OS=Leuconostoc mese... [more]

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Properties
Property NameValue
Genbank descriptionC32006D04EF RVDevelop1 Citrus clementina cDNA clone C32006D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920289 ID=FC920289; Name=FC920289; organism=Citrus clementina; type=EST; length=628bp
GAAATAAAGGCACTTGTCTCTCTTTCAACTAGCAGCTGCTAAGCCATGGC
AACGACGACATCATCACCTCACTCACTGTTTCTCCAGAACCGTAATAGCC
ACCCACTCAATAAAAACAATCTCGCATCTTTCACCAACCTTAAAAAGATC
AATTTTTTTAACACCAAAAGAGCCATTTCAGTCACCTGCTCCGCCGCATC
AGCACCAACCCAAGATCGAACGGCGGCCCAGATCCAATCCGGGCAAGAAG
ACCGGGTCTTCAACTTCGCTGCGGGCCCCGCTAATCTCCCGGAGAAAGTT
CTACTCAAGGCCCAATCGGAGCTTTACAACTGGCGCGGATCTGGCATGAG
CGTGATGGAAATGAGCCATAGAGGTAAAGAATTCAAGTCCATTATTGAAA
AAGCTGAATCGGATCTTAGAGCCCTCTTGAATATTCCCCAAGAATATTCT
GTTTTGTTCTTGCAAGGCGGCGCTACGACACAGTTCGCCGCCGTTCCATT
GAATTTGTGTACACCTAATGACCCGGTCGATTATATCGTCACCGGGTCGT
GGAGTGACAAAGCTTTTAAAGAAGCGCAAAAATTTTGCAACCCACAAGTG
ATTTGCTCTGGCAAAAGCTGAAAGTACA
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