FC920289

Overview
NameFC920289
Unique NameFC920289
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length628
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_PSEA7 (Phosphoserine aminotransferase OS=Pseudomonas aeruginosa (strain PA7) GN=serC PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 3.736e-33
Identity = 70/125 (56.00%), Postives = 87/125 (69.60%), Query Frame = 1
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVICSGKS*KY 627
            R FNF AGPA LP+ VL +AQ+EL +WRG G+SVMEMSHR  ++ +I  KAE DLR LL+IP +Y VLFLQGGA+ QFA +PLNL   +   DYI TG WS KA +EA+++    V  S K   Y
Sbjct:    4 RAFNFCAGPAALPDAVLQRAQAELLDWRGKGLSVMEMSHRSDDYVAIASKAEHDLRDLLDIPSDYKVLFLQGGASQQFAEIPLNLLPEDGVADYIDTGIWSKKAIEEARRYGRVNVAASAKEYDY 128          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_BURPP (Phosphoserine aminotransferase OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=serC PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 3.736e-33
Identity = 69/122 (56.56%), Postives = 89/122 (72.95%), Query Frame = 1
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVICSGKS 618
            RVFNF+AGPA +PE+VL +A  E+ +W+GSGMSVMEMSHRGKEF SI E+A  DLR LL +P  + +LFLQGG   + A VP+NL       D++VTGSWS K+FKEAQK+    +  SG++
Sbjct:    2 RVFNFSAGPAAMPEEVLRQAADEMLDWQGSGMSVMEMSHRGKEFMSIHEEALVDLRDLLEVPASHRILFLQGGGLGENAIVPMNLMGAKPRADFVVTGSWSQKSFKEAQKYGTVHLAASGQT 123          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_VIBVY (Phosphoserine aminotransferase OS=Vibrio vulnificus (strain YJ016) GN=serC PE=3 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 6.373e-33
Identity = 68/117 (58.12%), Postives = 83/117 (70.94%), Query Frame = 1
Query:  250 DRVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQV 600
            D VFNF+AGPA LP+ V+ +AQ EL NW+G G SVME+SHR KEF ++ E++E DLR LLNIP  Y VLF QGGA  QFAAVPLNL        YI  G W++ A +EA+K+C P V
Sbjct:    6 DNVFNFSAGPAALPKPVMQQAQQELLNWQGLGTSVMEISHRSKEFIAVAEQSEQDLRDLLNIPDNYKVLFCQGGARAQFAAVPLNLLGDATTATYIDAGYWAESAVEEAKKYCQPDV 122          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_VIBVU (Phosphoserine aminotransferase OS=Vibrio vulnificus GN=serC PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 6.373e-33
Identity = 68/117 (58.12%), Postives = 83/117 (70.94%), Query Frame = 1
Query:  250 DRVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQV 600
            D VFNF+AGPA LP+ V+ +AQ EL NW+G G SVME+SHR KEF ++ E++E DLR LLNIP  Y VLF QGGA  QFAAVPLNL        YI  G W++ A +EA+K+C P V
Sbjct:    6 DNVFNFSAGPAALPKPVMQQAQQELLNWQGLGTSVMEISHRSKEFIAVAEQSEQDLRDLLNIPDNYKVLFCQGGARAQFAAVPLNLLGDATTATYIDAGYWAESAVEEAKKYCQPDV 122          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_SODGM (Phosphoserine aminotransferase OS=Sodalis glossinidius (strain morsitans) GN=serC PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 6.373e-33
Identity = 68/118 (57.63%), Postives = 83/118 (70.34%), Query Frame = 1
Query:  250 DRVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVI 603
            ++VFNF++GPA LP +VL KA+ EL NW G G SVME+SHR KEF  + + +E DLR LL +P  Y VLF QGGA  QFAAVP+NL       DYI  G W+  A KEAQK+C+PQVI
Sbjct:    2 NQVFNFSSGPAMLPAEVLRKAEQELCNWHGLGTSVMEISHRSKEFLEVAQSSEQDLRELLAVPDNYKVLFCQGGARAQFAAVPMNLLGEATRADYIDGGYWAHSAIKEAQKYCDPQVI 119          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_STRM5 (Phosphoserine aminotransferase OS=Stenotrophomonas maltophilia (strain R551-3) GN=serC PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 8.323e-33
Identity = 65/125 (52.00%), Postives = 88/125 (70.40%), Query Frame = 1
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVICSGKS*KY 627
            R FNF+AGPA LPE VL +AQ+E+ +W GSG S++EMSHRG EF S+  +AE+DLR LL+IP++Y+VLFL GGATTQ A +PLN   P    DY+V+G W   A K+A  + +  +  S ++  Y
Sbjct:    3 RAFNFSAGPATLPESVLRQAQAEMLDWHGSGASIVEMSHRGAEFMSVAAEAEADLRRLLDIPEDYAVLFLSGGATTQQALIPLNFAAPGQRADYVVSGHWGKTAVKQAGVYVDVNIAASSEANGY 127          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_BURP8 (Phosphoserine aminotransferase OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=serC PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 8.323e-33
Identity = 68/122 (55.74%), Postives = 89/122 (72.95%), Query Frame = 1
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVICSGKS 618
            RVFNF+AGPA +PE+VL +A  E+ +W GSGMSVMEMSHRGKEF +I E+A +DLR LL +P  + +LFLQGG   + A VP+NL       D++VTGSWS K+FKEAQK+    +  SG++
Sbjct:    2 RVFNFSAGPAAMPEEVLRQAADEMLDWGGSGMSVMEMSHRGKEFMTIHEEALTDLRELLQVPSSHHILFLQGGGLGENAIVPMNLMGRKARADFVVTGSWSQKSFKEAQKYGTVHLAASGET 123          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_BACHK (Phosphoserine aminotransferase OS=Bacillus thuringiensis subsp. konkukian GN=serC PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 8.323e-33
Identity = 70/126 (55.56%), Postives = 91/126 (72.22%), Query Frame = 1
Query:  250 DRVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVICSGKS*KY 627
            +RV+NF+AGP+ LP  VL K Q EL N+ G+GMS+MEMSHR   F+SII++A S LR L+NIP EY VLFLQGGA+ QF+ +PLNL        Y++TGSWS KA +EA+K    QVI S ++ K+
Sbjct:    2 ERVYNFSAGPSILPLPVLEKVQKELVNYNGTGMSIMEMSHRSSYFQSIIDEAGSLLRELMNIPDEYEVLFLQGGASLQFSMIPLNLMNTYKKAGYVLTGSWSKKALQEAEKVGEVQVIASSENEKF 127          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_BACAA (Phosphoserine aminotransferase OS=Bacillus anthracis (strain A0248) GN=serC PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 8.323e-33
Identity = 70/126 (55.56%), Postives = 91/126 (72.22%), Query Frame = 1
Query:  250 DRVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVICSGKS*KY 627
            +RV+NF+AGP+ LP  VL K Q EL N+ G+GMS+MEMSHR   F+SII++A S LR L+NIP EY VLFLQGGA+ QF+ +PLNL        Y++TGSWS KA +EA+K    QVI S ++ K+
Sbjct:    3 ERVYNFSAGPSILPLPVLEKVQKELVNYNGTGMSIMEMSHRSSYFQSIIDEAGSLLRELMNIPDEYEVLFLQGGASLQFSMIPLNLMNTYKKAGYVLTGSWSKKALQEAEKVGEVQVIASSENEKF 128          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_BACCZ (Phosphoserine aminotransferase OS=Bacillus cereus (strain ZK / E33L) GN=serC PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.087e-32
Identity = 69/126 (54.76%), Postives = 91/126 (72.22%), Query Frame = 1
Query:  250 DRVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVICSGKS*KY 627
            +RV+NF+AGP+ LP  VL K Q EL N+ G+GMS+MEMSHR   F+SII++A + LR L+NIP EY VLFLQGGA+ QF+ +PLNL        Y++TGSWS KA +EA+K    QVI S ++ K+
Sbjct:    2 ERVYNFSAGPSILPLPVLEKVQKELVNYNGTGMSIMEMSHRSSYFQSIIDEASNLLRELMNIPNEYDVLFLQGGASLQFSMIPLNLMNTYKKAGYVLTGSWSKKALQEAEKVGEVQVIASSENEKF 127          
The following BLAST results are available for this feature:
BLAST of FC920289 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 255
Match NameE-valueIdentityDescription
SERC_PSEA73.736e-3356.00Phosphoserine aminotransferase OS=Pseudomonas aeru... [more]
SERC_BURPP3.736e-3356.56Phosphoserine aminotransferase OS=Burkholderia phy... [more]
SERC_VIBVY6.373e-3358.12Phosphoserine aminotransferase OS=Vibrio vulnificu... [more]
SERC_VIBVU6.373e-3358.12Phosphoserine aminotransferase OS=Vibrio vulnificu... [more]
SERC_SODGM6.373e-3357.63Phosphoserine aminotransferase OS=Sodalis glossini... [more]
SERC_STRM58.323e-3352.00Phosphoserine aminotransferase OS=Stenotrophomonas... [more]
SERC_BURP88.323e-3355.74Phosphoserine aminotransferase OS=Burkholderia phy... [more]
SERC_BACHK8.323e-3355.56Phosphoserine aminotransferase OS=Bacillus thuring... [more]
SERC_BACAA8.323e-3355.56Phosphoserine aminotransferase OS=Bacillus anthrac... [more]
SERC_BACCZ1.087e-3254.76Phosphoserine aminotransferase OS=Bacillus cereus ... [more]

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Properties
Property NameValue
Genbank descriptionC32006D04EF RVDevelop1 Citrus clementina cDNA clone C32006D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920289 ID=FC920289; Name=FC920289; organism=Citrus clementina; type=EST; length=628bp
GAAATAAAGGCACTTGTCTCTCTTTCAACTAGCAGCTGCTAAGCCATGGC
AACGACGACATCATCACCTCACTCACTGTTTCTCCAGAACCGTAATAGCC
ACCCACTCAATAAAAACAATCTCGCATCTTTCACCAACCTTAAAAAGATC
AATTTTTTTAACACCAAAAGAGCCATTTCAGTCACCTGCTCCGCCGCATC
AGCACCAACCCAAGATCGAACGGCGGCCCAGATCCAATCCGGGCAAGAAG
ACCGGGTCTTCAACTTCGCTGCGGGCCCCGCTAATCTCCCGGAGAAAGTT
CTACTCAAGGCCCAATCGGAGCTTTACAACTGGCGCGGATCTGGCATGAG
CGTGATGGAAATGAGCCATAGAGGTAAAGAATTCAAGTCCATTATTGAAA
AAGCTGAATCGGATCTTAGAGCCCTCTTGAATATTCCCCAAGAATATTCT
GTTTTGTTCTTGCAAGGCGGCGCTACGACACAGTTCGCCGCCGTTCCATT
GAATTTGTGTACACCTAATGACCCGGTCGATTATATCGTCACCGGGTCGT
GGAGTGACAAAGCTTTTAAAGAAGCGCAAAAATTTTGCAACCCACAAGTG
ATTTGCTCTGGCAAAAGCTGAAAGTACA
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