FC920289

Overview
NameFC920289
Unique NameFC920289
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length628
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_YERPY (Phosphoserine aminotransferase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=serC PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.420e-32
Identity = 68/117 (58.12%), Postives = 82/117 (70.09%), Query Frame = 1 
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVI 603
            +V+NF+AGPA LP +VL +A+ EL NW G G SVME+SHR KEF  + E++E DLR LL IP  Y VLF  GGA  QFAAVPLNL   ++  DYI  G W+  A KEAQK+C P VI
Sbjct:    3 QVYNFSAGPAMLPVEVLRRAEQELRNWHGLGTSVMEISHRSKEFMQVAEESEKDLRDLLQIPANYKVLFCHGGARAQFAAVPLNLLGDSNSADYIDGGYWAHSAVKEAQKYCTPHVI 119
[Close]
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_YERPS (Phosphoserine aminotransferase OS=Yersinia pseudotuberculosis GN=serC PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.420e-32
Identity = 68/117 (58.12%), Postives = 82/117 (70.09%), Query Frame = 1 
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVI 603
            +V+NF+AGPA LP +VL +A+ EL NW G G SVME+SHR KEF  + E++E DLR LL IP  Y VLF  GGA  QFAAVPLNL   ++  DYI  G W+  A KEAQK+C P VI
Sbjct:    3 QVYNFSAGPAMLPVEVLRRAEQELRNWHGLGTSVMEISHRSKEFMQVAEESEKDLRDLLQIPANYKVLFCHGGARAQFAAVPLNLLGDSNSADYIDGGYWAHSAVKEAQKYCTPHVI 119
[Close]
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_YERPP (Phosphoserine aminotransferase OS=Yersinia pestis (strain Pestoides F) GN=serC PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.420e-32
Identity = 68/117 (58.12%), Postives = 81/117 (69.23%), Query Frame = 1 
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVI 603
            +V+NF+AGPA LP +VL +A+ EL NW G G SVME+SHR KEF  + E++E DLR LL IP  Y VLF  GGA  QFAAVPLNL    +  DYI  G W+  A KEAQK+C P VI
Sbjct:    3 QVYNFSAGPAMLPVEVLRRAEQELRNWHGLGTSVMEISHRSKEFMQVAEESEKDLRDLLQIPANYKVLFCHGGARAQFAAVPLNLLGDRNSADYIDGGYWAHSAIKEAQKYCTPNVI 119
[Close]
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_YERPG (Phosphoserine aminotransferase OS=Yersinia pestis bv. Antiqua (strain Angola) GN=serC PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.420e-32
Identity = 68/117 (58.12%), Postives = 81/117 (69.23%), Query Frame = 1 
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVI 603
            +V+NF+AGPA LP +VL +A+ EL NW G G SVME+SHR KEF  + E++E DLR LL IP  Y VLF  GGA  QFAAVPLNL    +  DYI  G W+  A KEAQK+C P VI
Sbjct:    3 QVYNFSAGPAMLPVEVLRRAEQELRNWHGLGTSVMEISHRSKEFMQVAEESEKDLRDLLQIPANYKVLFCHGGARAQFAAVPLNLLGDRNSADYIDGGYWAHSAIKEAQKYCTPNVI 119
[Close]
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_YERPE (Phosphoserine aminotransferase OS=Yersinia pestis GN=serC PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.420e-32
Identity = 68/117 (58.12%), Postives = 81/117 (69.23%), Query Frame = 1 
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVI 603
            +V+NF+AGPA LP +VL +A+ EL NW G G SVME+SHR KEF  + E++E DLR LL IP  Y VLF  GGA  QFAAVPLNL    +  DYI  G W+  A KEAQK+C P VI
Sbjct:    3 QVYNFSAGPAMLPVEVLRRAEQELRNWHGLGTSVMEISHRSKEFMQVAEESEKDLRDLLQIPANYKVLFCHGGARAQFAAVPLNLLGDRNSADYIDGGYWAHSAIKEAQKYCTPNVI 119
[Close]
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_YERPB (Phosphoserine aminotransferase OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=serC PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.420e-32
Identity = 68/117 (58.12%), Postives = 82/117 (70.09%), Query Frame = 1 
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVI 603
            +V+NF+AGPA LP +VL +A+ EL NW G G SVME+SHR KEF  + E++E DLR LL IP  Y VLF  GGA  QFAAVPLNL   ++  DYI  G W+  A KEAQK+C P VI
Sbjct:    3 QVYNFSAGPAMLPVEVLRRAEQELRNWHGLGTSVMEISHRSKEFMQVAEESEKDLRDLLQIPANYKVLFCHGGARAQFAAVPLNLLGDSNSADYIDGGYWAHSAVKEAQKYCTPHVI 119
[Close]
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_YERPA (Phosphoserine aminotransferase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=serC PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.420e-32
Identity = 68/117 (58.12%), Postives = 81/117 (69.23%), Query Frame = 1 
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVI 603
            +V+NF+AGPA LP +VL +A+ EL NW G G SVME+SHR KEF  + E++E DLR LL IP  Y VLF  GGA  QFAAVPLNL    +  DYI  G W+  A KEAQK+C P VI
Sbjct:    3 QVYNFSAGPAMLPVEVLRRAEQELRNWHGLGTSVMEISHRSKEFMQVAEESEKDLRDLLQIPANYKVLFCHGGARAQFAAVPLNLLGDRNSADYIDGGYWAHSAIKEAQKYCTPNVI 119
[Close]
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_YERP3 (Phosphoserine aminotransferase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=serC PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.420e-32
Identity = 68/117 (58.12%), Postives = 82/117 (70.09%), Query Frame = 1 
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVI 603
            +V+NF+AGPA LP +VL +A+ EL NW G G SVME+SHR KEF  + E++E DLR LL IP  Y VLF  GGA  QFAAVPLNL   ++  DYI  G W+  A KEAQK+C P VI
Sbjct:    3 QVYNFSAGPAMLPVEVLRRAEQELRNWHGLGTSVMEISHRSKEFMQVAEESEKDLRDLLQIPANYKVLFCHGGARAQFAAVPLNLLGDSNSADYIDGGYWAHSAVKEAQKYCTPHVI 119
[Close]
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_STRMK (Phosphoserine aminotransferase OS=Stenotrophomonas maltophilia (strain K279a) GN=serC PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.420e-32
Identity = 65/125 (52.00%), Postives = 87/125 (69.60%), Query Frame = 1 
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVICSGKS*KY 627
            R FNF+AGPA LPE VL +AQ+E+ +W GSG S++EMSHRG EF S+  +AE+DLR LL+IP +Y+VLFL GGATTQ A +PLN   P    DY+V+G W   A K+A  + +  +  S ++  Y
Sbjct:    3 RAFNFSAGPATLPESVLRQAQAEMLDWHGSGASIVEMSHRGAEFMSVAAEAEADLRRLLDIPDDYAVLFLSGGATTQQALIPLNFAAPGQRADYVVSGHWGKTAVKQAGVYVDVNIAASSEANGY 127
[Close]
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_PSEST (Phosphoserine aminotransferase OS=Pseudomonas stutzeri GN=serC PE=3 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 1.420e-32
Identity = 69/125 (55.20%), Postives = 86/125 (68.80%), Query Frame = 1 
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVICSGKS*KY 627
            R FNF AGPA LPE VL +AQ+EL +W+G G+SVMEMSHR   + +I EKAE DLR L+ IP +Y VLFLQGGA+ QFA +PLNL       DY+ TG WS K+ +EA++F N  +  S K   Y
Sbjct:    4 RAFNFCAGPAALPEAVLQRAQAELLDWQGRGLSVMEMSHRSDAYVAIAEKAEQDLRDLMAIPSDYKVLFLQGGASQQFAEIPLNLLPEGGVADYVDTGIWSRKSIEEARRFGNVNLAASAKPYDY 128
The following BLAST results are available for this feature:
BLAST of FC920289 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 255
Match NameE-valueIdentityDescription
SERC_YERPY1.420e-3258.12Phosphoserine aminotransferase OS=Yersinia pseudot... [more]
SERC_YERPS1.420e-3258.12Phosphoserine aminotransferase OS=Yersinia pseudot... [more]
SERC_YERPP1.420e-3258.12Phosphoserine aminotransferase OS=Yersinia pestis ... [more]
SERC_YERPG1.420e-3258.12Phosphoserine aminotransferase OS=Yersinia pestis ... [more]
SERC_YERPE1.420e-3258.12Phosphoserine aminotransferase OS=Yersinia pestis ... [more]
SERC_YERPB1.420e-3258.12Phosphoserine aminotransferase OS=Yersinia pseudot... [more]
SERC_YERPA1.420e-3258.12Phosphoserine aminotransferase OS=Yersinia pestis ... [more]
SERC_YERP31.420e-3258.12Phosphoserine aminotransferase OS=Yersinia pseudot... [more]
SERC_STRMK1.420e-3252.00Phosphoserine aminotransferase OS=Stenotrophomonas... [more]
SERC_PSEST1.420e-3255.20Phosphoserine aminotransferase OS=Pseudomonas stut... [more]

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Properties
Property NameValue
Genbank descriptionC32006D04EF RVDevelop1 Citrus clementina cDNA clone C32006D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920289 ID=FC920289; Name=FC920289; organism=Citrus clementina; type=EST; length=628bp
GAAATAAAGGCACTTGTCTCTCTTTCAACTAGCAGCTGCTAAGCCATGGC
AACGACGACATCATCACCTCACTCACTGTTTCTCCAGAACCGTAATAGCC
ACCCACTCAATAAAAACAATCTCGCATCTTTCACCAACCTTAAAAAGATC
AATTTTTTTAACACCAAAAGAGCCATTTCAGTCACCTGCTCCGCCGCATC
AGCACCAACCCAAGATCGAACGGCGGCCCAGATCCAATCCGGGCAAGAAG
ACCGGGTCTTCAACTTCGCTGCGGGCCCCGCTAATCTCCCGGAGAAAGTT
CTACTCAAGGCCCAATCGGAGCTTTACAACTGGCGCGGATCTGGCATGAG
CGTGATGGAAATGAGCCATAGAGGTAAAGAATTCAAGTCCATTATTGAAA
AAGCTGAATCGGATCTTAGAGCCCTCTTGAATATTCCCCAAGAATATTCT
GTTTTGTTCTTGCAAGGCGGCGCTACGACACAGTTCGCCGCCGTTCCATT
GAATTTGTGTACACCTAATGACCCGGTCGATTATATCGTCACCGGGTCGT
GGAGTGACAAAGCTTTTAAAGAAGCGCAAAAATTTTGCAACCCACAAGTG
ATTTGCTCTGGCAAAAGCTGAAAGTACA
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