FC920289

Overview
NameFC920289
Unique NameFC920289
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length628
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_BACC1 (Phosphoserine aminotransferase OS=Bacillus cereus (strain ATCC 10987) GN=serC PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.420e-32
Identity = 70/126 (55.56%), Postives = 91/126 (72.22%), Query Frame = 1
Query:  250 DRVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVICSGKS*KY 627
            +RV+NF+AGP+ LP  VL K Q EL N+ G+GMS+MEMSHR   F+SII++A S LR L+NIP EY VLFLQGGA+ QF+ +PLN+        YI+TGSWS KA +EA+K    QVI S ++ K+
Sbjct:    2 ERVYNFSAGPSILPLPVLEKVQKELVNYNGTGMSIMEMSHRSSYFQSIIDEAGSLLRELMNIPDEYEVLFLQGGASLQFSMIPLNVMNTYKKAGYILTGSWSKKAMQEAEKVGEVQVIASSENEKF 127          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_YERE8 (Phosphoserine aminotransferase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=serC PE=3 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 2.422e-32
Identity = 68/117 (58.12%), Postives = 81/117 (69.23%), Query Frame = 1
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVI 603
            +V+NF+AGPA LP +VL +A+ EL NW G G SVME+SHR KEF  + E+AE DLR L+ IP  Y VLF  GGA  QFAAVPLNL   +   DYI  G W+  A KEAQK+C P VI
Sbjct:    3 QVYNFSAGPAMLPVEVLRRAEQELRNWHGLGTSVMEISHRSKEFMQVAEEAEKDLRDLMQIPANYKVLFCHGGARAQFAAVPLNLLGDSRSADYIDGGYWAHSAVKEAQKYCTPNVI 119          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_VIBPA (Phosphoserine aminotransferase OS=Vibrio parahaemolyticus GN=serC PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.422e-32
Identity = 67/117 (57.26%), Postives = 83/117 (70.94%), Query Frame = 1
Query:  250 DRVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQV 600
            D VFNF+AGPA LP+ V+ +AQ EL +W+G G SVME+SHR KEF  + ++AE DLR LLNIP  Y VLF QGGA  QFAAVPLNL    +   YI  G W++ A +EA+K+C P V
Sbjct:    6 DNVFNFSAGPAALPKAVMQQAQQELIDWQGLGTSVMEISHRSKEFIKVAQEAEQDLRDLLNIPDNYKVLFCQGGARAQFAAVPLNLLGDAETATYIDGGYWAESAVEEAKKYCEPDV 122          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_BACCR (Phosphoserine aminotransferase OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=serC PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.422e-32
Identity = 69/126 (54.76%), Postives = 90/126 (71.43%), Query Frame = 1
Query:  250 DRVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVICSGKS*KY 627
            +RV+NF+AGP+ LP  VL K Q EL N+ G+GMS+MEMSHR   F+SIIE+A + LR L++IP EY VLFLQGGA+ QF+ +PLNL        Y++TGSWS KA +EA+K    QVI S +  K+
Sbjct:    2 ERVYNFSAGPSILPLPVLEKVQKELLNYNGTGMSIMEMSHRSSYFQSIIEEASNLLRELMSIPDEYEVLFLQGGASLQFSMIPLNLMNTYKKAGYVLTGSWSKKALQEAEKVGEVQVIASSEQEKF 127          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_LARHH (Phosphoserine aminotransferase OS=Laribacter hongkongensis (strain HLHK9) GN=serC PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.163e-32
Identity = 66/121 (54.55%), Postives = 88/121 (72.73%), Query Frame = 1
Query:  256 VFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVICSGKS 618
            ++NF+AGPA LP+ VL +AQ EL +W GSGMSVMEMSHRG+EF SI  +AE+DLR LL IP  Y VLFLQGGA +QF+ VP+NL       DY++TG W   A KEA+ + + ++  +G++
Sbjct:    3 IYNFSAGPALLPQDVLREAQRELTDWHGSGMSVMEMSHRGREFMSIHARAEADLRELLQIPDNYRVLFLQGGAHSQFSMVPMNLLRGKTTADYVITGHWGKVAIKEARCYGDMRIAATGEA 123          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_ERWT9 (Phosphoserine aminotransferase OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=serC PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.163e-32
Identity = 67/117 (57.26%), Postives = 81/117 (69.23%), Query Frame = 1
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVI 603
            ++FNF++GPA LP +VL +A+ EL NWRG G SVME+SHR KEF  + E+AE D R LL IP  Y VLF  GGA  QFAAVPLNL   +   DY+  G W+  A KEAQK+C P VI
Sbjct:    3 QIFNFSSGPAMLPVEVLRRAEQELCNWRGLGTSVMEISHRSKEFIQVAEEAEKDFRDLLKIPSNYKVLFCHGGARGQFAAVPLNLLGQHGKADYVDGGYWAASAIKEAQKYCTPNVI 119          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_AZOSE (Phosphoserine aminotransferase OS=Azoarcus sp. (strain EbN1) GN=serC PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.163e-32
Identity = 68/109 (62.39%), Postives = 83/109 (76.15%), Query Frame = 1
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQ 579
            RV+NF+AGPA LPE VL +A  E+ +W+G+G  VMEMSHRGKEF SI+ +AE+DLR LL IP  Y VLFLQGGAT QFA +P+NL       DY+VTGSWS KA+ EA+
Sbjct:    3 RVYNFSAGPAALPEAVLQQAAEEMLDWQGAGCGVMEMSHRGKEFTSIVAQAEADLRELLAIPDNYRVLFLQGGATQQFAQIPMNLLA-GGSADYLVTGSWSKKAYGEAK 110          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_PSEFS (Phosphoserine aminotransferase OS=Pseudomonas fluorescens (strain SBW25) GN=serC PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.131e-32
Identity = 70/125 (56.00%), Postives = 82/125 (65.60%), Query Frame = 1
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVICSGKS*KY 627
            R +NF AGPA LPE VL +AQ EL +W G G+SVMEMSHR  EF SI  KAE DLR LL IP  Y VLFLQGGA+ QFA +PLNL   +   DYI TG W  KA +EA ++ +  V  + K   Y
Sbjct:    4 RAYNFCAGPAALPEAVLQRAQGELLDWHGKGLSVMEMSHRSDEFVSIATKAEQDLRDLLGIPSHYKVLFLQGGASQQFAQIPLNLLPEDGTADYIDTGIWGQKAIEEASRYGHVNVAGTAKPYDY 128          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_HAHCH (Phosphoserine aminotransferase OS=Hahella chejuensis (strain KCTC 2396) GN=serC PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.395e-32
Identity = 67/126 (53.17%), Postives = 85/126 (67.46%), Query Frame = 1
Query:  250 DRVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVICSGKS*KY 627
            DR FNF AGP+ LP +VLL+AQ+EL +WRG G+S+MEMSHR  +F ++  +AE D R L+++P  Y VLF+QGGA TQFA+VPLNL       DYI TG WS KA  EA ++    V  S K   Y
Sbjct:    3 DRKFNFCAGPSALPTEVLLQAQAELLDWRGKGLSIMEMSHRSDDFVAVAVEAERDFRELMSVPDNYKVLFVQGGAATQFASVPLNLLKLGAEADYIDTGIWSKKAIAEAGRYLKVNVAASAKDNGY 128          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_ACIF5 (Phosphoserine aminotransferase OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=serC PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.395e-32
Identity = 68/120 (56.67%), Postives = 83/120 (69.17%), Query Frame = 1
Query:  256 VFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVICSGK 615
            +FNF+AGPA LP  VL + Q+EL +W GSGMSVMEMSHRG EF  I  +AE DLR LL+IP  Y +LFLQGGAT QFA VPLNL   +    Y+ TG WS KA  EA++F   ++  S +
Sbjct:    5 IFNFSAGPAVLPHVVLEQVQAELLDWHGSGMSVMEMSHRGPEFMKIAAEAEQDLRDLLDIPANYKILFLQGGATLQFAMVPLNLMRGHGKASYVQTGIWSKKAIAEARRFTAVEIAASNE 124          
The following BLAST results are available for this feature:
BLAST of FC920289 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 255
Match NameE-valueIdentityDescription
SERC_BACC11.420e-3255.56Phosphoserine aminotransferase OS=Bacillus cereus ... [more]
SERC_YERE82.422e-3258.12Phosphoserine aminotransferase OS=Yersinia enteroc... [more]
SERC_VIBPA2.422e-3257.26Phosphoserine aminotransferase OS=Vibrio parahaemo... [more]
SERC_BACCR2.422e-3254.76Phosphoserine aminotransferase OS=Bacillus cereus ... [more]
SERC_LARHH3.163e-3254.55Phosphoserine aminotransferase OS=Laribacter hongk... [more]
SERC_ERWT93.163e-3257.26Phosphoserine aminotransferase OS=Erwinia tasmanie... [more]
SERC_AZOSE3.163e-3262.39Phosphoserine aminotransferase OS=Azoarcus sp. (st... [more]
SERC_PSEFS4.131e-3256.00Phosphoserine aminotransferase OS=Pseudomonas fluo... [more]
SERC_HAHCH5.395e-3253.17Phosphoserine aminotransferase OS=Hahella chejuens... [more]
SERC_ACIF55.395e-3256.67Phosphoserine aminotransferase OS=Acidithiobacillu... [more]

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Properties
Property NameValue
Genbank descriptionC32006D04EF RVDevelop1 Citrus clementina cDNA clone C32006D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920289 ID=FC920289; Name=FC920289; organism=Citrus clementina; type=EST; length=628bp
GAAATAAAGGCACTTGTCTCTCTTTCAACTAGCAGCTGCTAAGCCATGGC
AACGACGACATCATCACCTCACTCACTGTTTCTCCAGAACCGTAATAGCC
ACCCACTCAATAAAAACAATCTCGCATCTTTCACCAACCTTAAAAAGATC
AATTTTTTTAACACCAAAAGAGCCATTTCAGTCACCTGCTCCGCCGCATC
AGCACCAACCCAAGATCGAACGGCGGCCCAGATCCAATCCGGGCAAGAAG
ACCGGGTCTTCAACTTCGCTGCGGGCCCCGCTAATCTCCCGGAGAAAGTT
CTACTCAAGGCCCAATCGGAGCTTTACAACTGGCGCGGATCTGGCATGAG
CGTGATGGAAATGAGCCATAGAGGTAAAGAATTCAAGTCCATTATTGAAA
AAGCTGAATCGGATCTTAGAGCCCTCTTGAATATTCCCCAAGAATATTCT
GTTTTGTTCTTGCAAGGCGGCGCTACGACACAGTTCGCCGCCGTTCCATT
GAATTTGTGTACACCTAATGACCCGGTCGATTATATCGTCACCGGGTCGT
GGAGTGACAAAGCTTTTAAAGAAGCGCAAAAATTTTGCAACCCACAAGTG
ATTTGCTCTGGCAAAAGCTGAAAGTACA
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