FC920289

Overview
NameFC920289
Unique NameFC920289
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length628
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_ACIF2 (Phosphoserine aminotransferase OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=serC PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.395e-32
Identity = 68/120 (56.67%), Postives = 83/120 (69.17%), Query Frame = 1 
Query:  256 VFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVICSGK 615
            +FNF+AGPA LP  VL + Q+EL +W GSGMSVMEMSHRG EF  I  +AE DLR LL+IP  Y +LFLQGGAT QFA VPLNL   +    Y+ TG WS KA  EA++F   ++  S +
Sbjct:    5 IFNFSAGPAVLPHVVLEQVQAELLDWHGSGMSVMEMSHRGPEFMKIAAEAEQDLRDLLDIPANYKILFLQGGATLQFAMVPLNLMRGHGKASYVQTGIWSKKAIAEARRFTAVEIAASNE 124
[Close]
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_PSEMY (Phosphoserine aminotransferase OS=Pseudomonas mendocina (strain ymp) GN=serC PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 9.202e-32
Identity = 67/125 (53.60%), Postives = 86/125 (68.80%), Query Frame = 1 
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVICSGKS*KY 627
            R FNF AGPA LP  VL +AQ+E+ +W+G G+SVMEMSHR  E+ +I  +AE DLR LL +P +Y VLFLQGGA+ QFA +PLNL   +   DY+ TG WS KA +EA+++    V  S KS  Y
Sbjct:    4 RAFNFCAGPAALPTAVLQRAQAEMLDWQGKGLSVMEMSHRSDEYVAIASQAEQDLRDLLAVPNDYKVLFLQGGASQQFAEIPLNLLPEDGVADYVETGIWSKKAIEEARRYGAINVAASAKSYDY 128
[Close]
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_XENNE (Phosphoserine aminotransferase OS=Xenorhabdus nematophilus GN=serC PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.202e-31
Identity = 65/118 (55.08%), Postives = 85/118 (72.03%), Query Frame = 1 
Query:  250 DRVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVI 603
            ++V+NF+AGPA LP +VL +A+ EL NW G G SVME+SHR KEF ++  +AE DLR LL IP+ Y+VLF  GGA  QF+A+P NL       DYIV+G WS+ A KEA+K+C P +I
Sbjct:    2 NQVYNFSAGPAMLPAEVLRRAEQELCNWHGLGTSVMEISHRSKEFIAVAAEAEKDLRDLLAIPENYNVLFCHGGARGQFSALPQNLLGDKSTADYIVSGYWSECAAKEAEKYCTPNII 119
[Close]
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_SALTY (Phosphoserine aminotransferase OS=Salmonella typhimurium GN=serC PE=3 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 1.570e-31
Identity = 66/117 (56.41%), Postives = 79/117 (67.52%), Query Frame = 1 
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVI 603
            +VFNF++GPA LP +VL  AQ EL +W G G SVME+SHRGKEF  + E+AE D R LLNIP  Y VLF  GG   QFA VPLNL       DY+  G W+  A KEA+K+C PQ+I
Sbjct:    3 QVFNFSSGPAMLPAEVLKLAQQELCDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLNIPSNYKVLFCHGGGRGQFAGVPLNLLGDKTTADYVDAGYWAASAIKEAKKYCAPQII 119
[Close]
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_SALTI (Phosphoserine aminotransferase OS=Salmonella typhi GN=serC PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.570e-31
Identity = 66/117 (56.41%), Postives = 79/117 (67.52%), Query Frame = 1 
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVI 603
            +VFNF++GPA LP +VL  AQ EL +W G G SVME+SHRGKEF  + E+AE D R LLNIP  Y VLF  GG   QFA VPLNL       DY+  G W+  A KEA+K+C PQ+I
Sbjct:    3 QVFNFSSGPAMLPAEVLKLAQQELRDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLNIPSNYKVLFCHGGGRGQFAGVPLNLLGDKTTADYVDAGYWAASAIKEAKKYCAPQII 119
[Close]
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_SALSV (Phosphoserine aminotransferase OS=Salmonella schwarzengrund (strain CVM19633) GN=serC PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.570e-31
Identity = 66/117 (56.41%), Postives = 79/117 (67.52%), Query Frame = 1 
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVI 603
            +VFNF++GPA LP +VL  AQ EL +W G G SVME+SHRGKEF  + E+AE D R LLNIP  Y VLF  GG   QFA VPLNL       DY+  G W+  A KEA+K+C PQ+I
Sbjct:    3 QVFNFSSGPAMLPAEVLKLAQQELRDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLNIPSNYKVLFCHGGGRGQFAGVPLNLLGDKTTADYVDAGYWAASAIKEAKKYCAPQII 119
[Close]
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_SALPC (Phosphoserine aminotransferase OS=Salmonella paratyphi C (strain RKS4594) GN=serC PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.570e-31
Identity = 66/117 (56.41%), Postives = 79/117 (67.52%), Query Frame = 1 
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVI 603
            +VFNF++GPA LP +VL  AQ EL +W G G SVME+SHRGKEF  + E+AE D R LLNIP  Y VLF  GG   QFA VPLNL       DY+  G W+  A KEA+K+C PQ+I
Sbjct:    3 QVFNFSSGPAMLPAEVLKLAQQELRDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLNIPSNYKVLFCHGGGRGQFAGVPLNLLGDKTTADYVDAGYWAASAIKEAKKYCAPQII 119
[Close]
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_SALPB (Phosphoserine aminotransferase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=serC PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.570e-31
Identity = 66/117 (56.41%), Postives = 79/117 (67.52%), Query Frame = 1 
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVI 603
            +VFNF++GPA LP +VL  AQ EL +W G G SVME+SHRGKEF  + E+AE D R LLNIP  Y VLF  GG   QFA VPLNL       DY+  G W+  A KEA+K+C PQ+I
Sbjct:    3 QVFNFSSGPAMLPAEVLKLAQQELRDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLNIPSNYKVLFCHGGGRGQFAGVPLNLLGDKTTADYVDAGYWAASAIKEAKKYCAPQII 119
[Close]
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_SALNS (Phosphoserine aminotransferase OS=Salmonella newport (strain SL254) GN=serC PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.570e-31
Identity = 66/117 (56.41%), Postives = 79/117 (67.52%), Query Frame = 1 
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVI 603
            +VFNF++GPA LP +VL  AQ EL +W G G SVME+SHRGKEF  + E+AE D R LLNIP  Y VLF  GG   QFA VPLNL       DY+  G W+  A KEA+K+C PQ+I
Sbjct:    3 QVFNFSSGPAMLPAEVLKLAQQELCDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLNIPSNYKVLFCHGGGRGQFAGVPLNLLGDKTTADYVDAGYWAASAIKEAKKYCAPQII 119
[Close]
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_SALHS (Phosphoserine aminotransferase OS=Salmonella heidelberg (strain SL476) GN=serC PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.570e-31
Identity = 66/117 (56.41%), Postives = 79/117 (67.52%), Query Frame = 1 
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVI 603
            +VFNF++GPA LP +VL  AQ EL +W G G SVME+SHRGKEF  + E+AE D R LLNIP  Y VLF  GG   QFA VPLNL       DY+  G W+  A KEA+K+C PQ+I
Sbjct:    3 QVFNFSSGPAMLPAEVLKLAQQELRDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLNIPSNYKVLFCHGGGRGQFAGVPLNLLGDKTTADYVDAGYWAASAIKEAKKYCAPQII 119
The following BLAST results are available for this feature:
BLAST of FC920289 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 255
Match NameE-valueIdentityDescription
SERC_ACIF25.395e-3256.67Phosphoserine aminotransferase OS=Acidithiobacillu... [more]
SERC_PSEMY9.202e-3253.60Phosphoserine aminotransferase OS=Pseudomonas mend... [more]
SERC_XENNE1.202e-3155.08Phosphoserine aminotransferase OS=Xenorhabdus nema... [more]
SERC_SALTY1.570e-3156.41Phosphoserine aminotransferase OS=Salmonella typhi... [more]
SERC_SALTI1.570e-3156.41Phosphoserine aminotransferase OS=Salmonella typhi... [more]
SERC_SALSV1.570e-3156.41Phosphoserine aminotransferase OS=Salmonella schwa... [more]
SERC_SALPC1.570e-3156.41Phosphoserine aminotransferase OS=Salmonella parat... [more]
SERC_SALPB1.570e-3156.41Phosphoserine aminotransferase OS=Salmonella parat... [more]
SERC_SALNS1.570e-3156.41Phosphoserine aminotransferase OS=Salmonella newpo... [more]
SERC_SALHS1.570e-3156.41Phosphoserine aminotransferase OS=Salmonella heide... [more]

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Properties
Property NameValue
Genbank descriptionC32006D04EF RVDevelop1 Citrus clementina cDNA clone C32006D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920289 ID=FC920289; Name=FC920289; organism=Citrus clementina; type=EST; length=628bp
GAAATAAAGGCACTTGTCTCTCTTTCAACTAGCAGCTGCTAAGCCATGGC
AACGACGACATCATCACCTCACTCACTGTTTCTCCAGAACCGTAATAGCC
ACCCACTCAATAAAAACAATCTCGCATCTTTCACCAACCTTAAAAAGATC
AATTTTTTTAACACCAAAAGAGCCATTTCAGTCACCTGCTCCGCCGCATC
AGCACCAACCCAAGATCGAACGGCGGCCCAGATCCAATCCGGGCAAGAAG
ACCGGGTCTTCAACTTCGCTGCGGGCCCCGCTAATCTCCCGGAGAAAGTT
CTACTCAAGGCCCAATCGGAGCTTTACAACTGGCGCGGATCTGGCATGAG
CGTGATGGAAATGAGCCATAGAGGTAAAGAATTCAAGTCCATTATTGAAA
AAGCTGAATCGGATCTTAGAGCCCTCTTGAATATTCCCCAAGAATATTCT
GTTTTGTTCTTGCAAGGCGGCGCTACGACACAGTTCGCCGCCGTTCCATT
GAATTTGTGTACACCTAATGACCCGGTCGATTATATCGTCACCGGGTCGT
GGAGTGACAAAGCTTTTAAAGAAGCGCAAAAATTTTGCAACCCACAAGTG
ATTTGCTCTGGCAAAAGCTGAAAGTACA
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