FC920289

Overview
NameFC920289
Unique NameFC920289
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length628
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_SALGL (Phosphoserine aminotransferase OS=Salmonella gallinarum GN=serC PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.570e-31
Identity = 66/117 (56.41%), Postives = 79/117 (67.52%), Query Frame = 1 
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVI 603
            +VFNF++GPA LP +VL  AQ EL +W G G SVME+SHRGKEF  + E+AE D R LLNIP  Y VLF  GG   QFA VPLNL       DY+  G W+  A KEA+K+C PQ+I
Sbjct:    3 QVFNFSSGPAMLPAEVLKLAQQELRDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLNIPSNYKVLFCHGGGRGQFAGVPLNLLGDKTTADYVDAGYWAASAIKEAKKYCAPQII 119
[Close]
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_SALG2 (Phosphoserine aminotransferase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=serC PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.570e-31
Identity = 66/117 (56.41%), Postives = 79/117 (67.52%), Query Frame = 1 
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVI 603
            +VFNF++GPA LP +VL  AQ EL +W G G SVME+SHRGKEF  + E+AE D R LLNIP  Y VLF  GG   QFA VPLNL       DY+  G W+  A KEA+K+C PQ+I
Sbjct:    3 QVFNFSSGPAMLPAEVLKLAQQELRDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLNIPSNYKVLFCHGGGRGQFAGVPLNLLGDKTTADYVDAGYWAASAIKEAKKYCAPQII 119
[Close]
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_SALEP (Phosphoserine aminotransferase OS=Salmonella enteritidis PT4 (strain P125109) GN=serC PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.570e-31
Identity = 66/117 (56.41%), Postives = 79/117 (67.52%), Query Frame = 1 
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVI 603
            +VFNF++GPA LP +VL  AQ EL +W G G SVME+SHRGKEF  + E+AE D R LLNIP  Y VLF  GG   QFA VPLNL       DY+  G W+  A KEA+K+C PQ+I
Sbjct:    3 QVFNFSSGPAMLPAEVLKLAQQELRDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLNIPSNYKVLFCHGGGRGQFAGVPLNLLGDKTTADYVDAGYWAASAIKEAKKYCAPQII 119
[Close]
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_SALDC (Phosphoserine aminotransferase OS=Salmonella dublin (strain CT_02021853) GN=serC PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.570e-31
Identity = 66/117 (56.41%), Postives = 79/117 (67.52%), Query Frame = 1 
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVI 603
            +VFNF++GPA LP +VL  AQ EL +W G G SVME+SHRGKEF  + E+AE D R LLNIP  Y VLF  GG   QFA VPLNL       DY+  G W+  A KEA+K+C PQ+I
Sbjct:    3 QVFNFSSGPAMLPAEVLKLAQQELRDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLNIPSNYKVLFCHGGGRGQFAGVPLNLLGDKTTADYVDAGYWAASAIKEAKKYCAPQII 119
[Close]
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_SALCH (Phosphoserine aminotransferase OS=Salmonella choleraesuis GN=serC PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.570e-31
Identity = 66/117 (56.41%), Postives = 79/117 (67.52%), Query Frame = 1 
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVI 603
            +VFNF++GPA LP +VL  AQ EL +W G G SVME+SHRGKEF  + E+AE D R LLNIP  Y VLF  GG   QFA VPLNL       DY+  G W+  A KEA+K+C PQ+I
Sbjct:    3 QVFNFSSGPAMLPAEVLKLAQQELRDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLNIPSNYKVLFCHGGGRGQFAGVPLNLLGDKTTADYVDAGYWAASAIKEAKKYCAPQII 119
[Close]
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_SALA4 (Phosphoserine aminotransferase OS=Salmonella agona (strain SL483) GN=serC PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.570e-31
Identity = 66/117 (56.41%), Postives = 79/117 (67.52%), Query Frame = 1 
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVI 603
            +VFNF++GPA LP +VL  AQ EL +W G G SVME+SHRGKEF  + E+AE D R LLNIP  Y VLF  GG   QFA VPLNL       DY+  G W+  A KEA+K+C PQ+I
Sbjct:    3 QVFNFSSGPAMLPAEVLKLAQQELRDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLNIPSNYKVLFCHGGGRGQFAGVPLNLLGDKTTADYVDAGYWAASAIKEAKKYCAPQII 119
[Close]
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_AZOVD (Phosphoserine aminotransferase OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=serC PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.570e-31
Identity = 68/125 (54.40%), Postives = 83/125 (66.40%), Query Frame = 1 
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVICSGKS*KY 627
            R FNF AGPA LP  VL +AQ+E  +W+G G+SVMEMSHR  E+ +I  KAE DLR LL IP  Y VLFLQGGA+ QFA +PLNL       DY+ TG WS K+ +EA++F    V  S K+  Y
Sbjct:    4 RAFNFCAGPAALPTAVLERAQAEFLDWQGKGLSVMEMSHRSDEYVAIAAKAEQDLRDLLGIPSNYKVLFLQGGASQQFAEIPLNLLPEGGVADYVDTGIWSRKSMEEARRFGTVNVAASAKAYDY 128
[Close]
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_LEPBP (Phosphoserine aminotransferase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) GN=serC PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.050e-31
Identity = 66/126 (52.38%), Postives = 93/126 (73.81%), Query Frame = 1 
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFC-NPQVICSGKS*KY 627
            R++NF AGPA LP +V+ +A+SE  N+RG+GMSVMEMSHR K F+SI++++ SDLR LLN+P  Y+V++  GGAT QF+A+P N  +  D  D+ +TG W+ KAF+EA+KF  N + I +G   KY
Sbjct:    7 RIYNFNAGPAMLPTEVMEEAKSEFLNFRGTGMSVMEMSHREKHFQSILDESISDLRELLNLPSRYAVVYFPGGATLQFSAIPFNYLSSGDSCDFALTGVWAKKAFEEAKKFYPNVKSIFNGADSKY 132
[Close]
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_LEPBA (Phosphoserine aminotransferase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=serC PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.050e-31
Identity = 66/126 (52.38%), Postives = 93/126 (73.81%), Query Frame = 1 
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFC-NPQVICSGKS*KY 627
            R++NF AGPA LP +V+ +A+SE  N+RG+GMSVMEMSHR K F+SI++++ SDLR LLN+P  Y+V++  GGAT QF+A+P N  +  D  D+ +TG W+ KAF+EA+KF  N + I +G   KY
Sbjct:    7 RIYNFNAGPAMLPTEVMEEAKSEFLNFRGTGMSVMEMSHREKHFQSILDESISDLRELLNLPSRYAVVYFPGGATLQFSAIPFNYLSSGDSCDFALTGVWAKKAFEEAKKFYPNVKSIFNGADSKY 132
[Close]
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_XYLFT (Phosphoserine aminotransferase OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=serC PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.677e-31
Identity = 63/121 (52.07%), Postives = 81/121 (66.94%), Query Frame = 1 
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVICSGK 615
            R+FNF+ GPA LPE VL +AQ+E+  W   G SVME+SHR  EF ++ +  ESDLR LL +P +Y+VLFL GGATTQ A +PLN   P    DY+VTG WS  A K+A  + N  V+  G+
Sbjct:    4 RIFNFSPGPATLPEPVLRQAQAEMLEWNAVGASVMEISHRSAEFIALAKGIESDLRCLLGVPDDYAVLFLSGGATTQQALLPLNFAAPGQTADYVVTGHWSKTALKQASPYVNINVVADGE 124
The following BLAST results are available for this feature:
BLAST of FC920289 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 255
Match NameE-valueIdentityDescription
SERC_SALGL1.570e-3156.41Phosphoserine aminotransferase OS=Salmonella galli... [more]
SERC_SALG21.570e-3156.41Phosphoserine aminotransferase OS=Salmonella galli... [more]
SERC_SALEP1.570e-3156.41Phosphoserine aminotransferase OS=Salmonella enter... [more]
SERC_SALDC1.570e-3156.41Phosphoserine aminotransferase OS=Salmonella dubli... [more]
SERC_SALCH1.570e-3156.41Phosphoserine aminotransferase OS=Salmonella chole... [more]
SERC_SALA41.570e-3156.41Phosphoserine aminotransferase OS=Salmonella agona... [more]
SERC_AZOVD1.570e-3154.40Phosphoserine aminotransferase OS=Azotobacter vine... [more]
SERC_LEPBP2.050e-3152.38Phosphoserine aminotransferase OS=Leptospira bifle... [more]
SERC_LEPBA2.050e-3152.38Phosphoserine aminotransferase OS=Leptospira bifle... [more]
SERC_XYLFT2.677e-3152.07Phosphoserine aminotransferase OS=Xylella fastidio... [more]

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Properties
Property NameValue
Genbank descriptionC32006D04EF RVDevelop1 Citrus clementina cDNA clone C32006D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920289 ID=FC920289; Name=FC920289; organism=Citrus clementina; type=EST; length=628bp
GAAATAAAGGCACTTGTCTCTCTTTCAACTAGCAGCTGCTAAGCCATGGC
AACGACGACATCATCACCTCACTCACTGTTTCTCCAGAACCGTAATAGCC
ACCCACTCAATAAAAACAATCTCGCATCTTTCACCAACCTTAAAAAGATC
AATTTTTTTAACACCAAAAGAGCCATTTCAGTCACCTGCTCCGCCGCATC
AGCACCAACCCAAGATCGAACGGCGGCCCAGATCCAATCCGGGCAAGAAG
ACCGGGTCTTCAACTTCGCTGCGGGCCCCGCTAATCTCCCGGAGAAAGTT
CTACTCAAGGCCCAATCGGAGCTTTACAACTGGCGCGGATCTGGCATGAG
CGTGATGGAAATGAGCCATAGAGGTAAAGAATTCAAGTCCATTATTGAAA
AAGCTGAATCGGATCTTAGAGCCCTCTTGAATATTCCCCAAGAATATTCT
GTTTTGTTCTTGCAAGGCGGCGCTACGACACAGTTCGCCGCCGTTCCATT
GAATTTGTGTACACCTAATGACCCGGTCGATTATATCGTCACCGGGTCGT
GGAGTGACAAAGCTTTTAAAGAAGCGCAAAAATTTTGCAACCCACAAGTG
ATTTGCTCTGGCAAAAGCTGAAAGTACA
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