FC920289

Overview
NameFC920289
Unique NameFC920289
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length628
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6703 contig Ccv1_Contig6703:31..658. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_SHISS (Phosphoserine aminotransferase OS=Shigella sonnei (strain Ss046) GN=serC PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.497e-31
Identity = 63/116 (54.31%), Postives = 79/116 (68.10%), Query Frame = 1 
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQV 600
            ++FNF++GPA LP +VL +AQ EL +W G G SVME+SHRGKEF  + E+AE D R LLN+P  Y VLF  GG   QFAAVPLN+       DY+  G W+  A KEA+K+C P V
Sbjct:    3 QIFNFSSGPAMLPAEVLKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDLLNVPSNYKVLFCHGGGRGQFAAVPLNILGDKTTADYVDAGYWAASAIKEAKKYCTPNV 118
[Close]
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_SHIFL (Phosphoserine aminotransferase OS=Shigella flexneri GN=serC PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.497e-31
Identity = 63/116 (54.31%), Postives = 79/116 (68.10%), Query Frame = 1 
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQV 600
            ++FNF++GPA LP +VL +AQ EL +W G G SVME+SHRGKEF  + E+AE D R LLN+P  Y VLF  GG   QFAAVPLN+       DY+  G W+  A KEA+K+C P V
Sbjct:    3 QIFNFSSGPAMLPAEVLKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDLLNVPSNYKVLFCHGGGRGQFAAVPLNILGDKTTADYVDAGYWAASAIKEAKKYCTPNV 118
[Close]
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_SHIBS (Phosphoserine aminotransferase OS=Shigella boydii serotype 4 (strain Sb227) GN=serC PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.497e-31
Identity = 63/116 (54.31%), Postives = 79/116 (68.10%), Query Frame = 1 
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQV 600
            ++FNF++GPA LP +VL +AQ EL +W G G SVME+SHRGKEF  + E+AE D R LLN+P  Y VLF  GG   QFAAVPLN+       DY+  G W+  A KEA+K+C P V
Sbjct:    3 QIFNFSSGPAMLPAEVLKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDLLNVPSNYKVLFCHGGGRGQFAAVPLNILGDKTTADYVDAGYWAASAIKEAKKYCTPNV 118
[Close]
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_ERWCT (Phosphoserine aminotransferase OS=Erwinia carotovora subsp. atroseptica GN=serC PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.497e-31
Identity = 65/117 (55.56%), Postives = 78/117 (66.67%), Query Frame = 1 
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVI 603
            ++FNF+AGPA LP +VL +A+ EL NW G G SVME+SHR KEF  +  ++E DLR LL IP  Y VLF  GGA  QFAAVPLNL       DYI  G W+  A  EA+K+C P VI
Sbjct:    3 QIFNFSAGPAMLPVEVLRRAEQELCNWNGLGTSVMEISHRSKEFMQVAAESEQDLRDLLKIPSNYKVLFCHGGARAQFAAVPLNLLGERSTADYIDGGYWAHSAINEAEKYCTPNVI 119
[Close]
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_ECOSM (Phosphoserine aminotransferase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=serC PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.497e-31
Identity = 63/116 (54.31%), Postives = 79/116 (68.10%), Query Frame = 1 
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQV 600
            ++FNF++GPA LP +VL +AQ EL +W G G SVME+SHRGKEF  + E+AE D R LLN+P  Y VLF  GG   QFAAVPLN+       DY+  G W+  A KEA+K+C P V
Sbjct:    3 QIFNFSSGPAMLPAEVLKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDLLNVPSNYKVLFCHGGGRGQFAAVPLNILGDKTTADYVDAGYWAASAIKEAKKYCTPNV 118
[Close]
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_ECOSE (Phosphoserine aminotransferase OS=Escherichia coli (strain SE11) GN=serC PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.497e-31
Identity = 63/116 (54.31%), Postives = 79/116 (68.10%), Query Frame = 1 
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQV 600
            ++FNF++GPA LP +VL +AQ EL +W G G SVME+SHRGKEF  + E+AE D R LLN+P  Y VLF  GG   QFAAVPLN+       DY+  G W+  A KEA+K+C P V
Sbjct:    3 QIFNFSSGPAMLPAEVLKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDLLNVPSNYKVLFCHGGGRGQFAAVPLNILGDKTTADYVDAGYWAASAIKEAKKYCTPNV 118
[Close]
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_ECOLU (Phosphoserine aminotransferase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=serC PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.497e-31
Identity = 63/116 (54.31%), Postives = 79/116 (68.10%), Query Frame = 1 
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQV 600
            ++FNF++GPA LP +VL +AQ EL +W G G SVME+SHRGKEF  + E+AE D R LLN+P  Y VLF  GG   QFAAVPLN+       DY+  G W+  A KEA+K+C P V
Sbjct:    3 QIFNFSSGPAMLPAEVLKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDLLNVPSNYKVLFCHGGGRGQFAAVPLNILGDKTTADYVDAGYWAASAIKEAKKYCTPNV 118
[Close]
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_ECOLI (Phosphoserine aminotransferase OS=Escherichia coli (strain K12) GN=serC PE=1 SV=4)

HSP 1 Score: 134.806 bits (338), Expect = 3.497e-31
Identity = 63/116 (54.31%), Postives = 79/116 (68.10%), Query Frame = 1 
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQV 600
            ++FNF++GPA LP +VL +AQ EL +W G G SVME+SHRGKEF  + E+AE D R LLN+P  Y VLF  GG   QFAAVPLN+       DY+  G W+  A KEA+K+C P V
Sbjct:    3 QIFNFSSGPAMLPAEVLKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDLLNVPSNYKVLFCHGGGRGQFAAVPLNILGDKTTADYVDAGYWAASAIKEAKKYCTPNV 118
[Close]
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_ECOLC (Phosphoserine aminotransferase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=serC PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.497e-31
Identity = 63/116 (54.31%), Postives = 79/116 (68.10%), Query Frame = 1 
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQV 600
            ++FNF++GPA LP +VL +AQ EL +W G G SVME+SHRGKEF  + E+AE D R LLN+P  Y VLF  GG   QFAAVPLN+       DY+  G W+  A KEA+K+C P V
Sbjct:    3 QIFNFSSGPAMLPAEVLKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDLLNVPSNYKVLFCHGGGRGQFAAVPLNILGDKTTADYVDAGYWAASAIKEAKKYCTPNV 118
[Close]
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_ECOL6 (Phosphoserine aminotransferase OS=Escherichia coli O6 GN=serC PE=3 SV=3)

HSP 1 Score: 134.806 bits (338), Expect = 3.497e-31
Identity = 63/116 (54.31%), Postives = 79/116 (68.10%), Query Frame = 1 
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQV 600
            ++FNF++GPA LP +VL +AQ EL +W G G SVME+SHRGKEF  + E+AE D R LLN+P  Y VLF  GG   QFAAVPLN+       DY+  G W+  A KEA+K+C P V
Sbjct:    3 QIFNFSSGPAMLPAEVLKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDLLNVPSNYKVLFCHGGGRGQFAAVPLNILGDKTTADYVDAGYWAASAIKEAKKYCTPNV 118
The following BLAST results are available for this feature:
BLAST of FC920289 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 255
Match NameE-valueIdentityDescription
SERC_SHISS3.497e-3154.31Phosphoserine aminotransferase OS=Shigella sonnei ... [more]
SERC_SHIFL3.497e-3154.31Phosphoserine aminotransferase OS=Shigella flexner... [more]
SERC_SHIBS3.497e-3154.31Phosphoserine aminotransferase OS=Shigella boydii ... [more]
SERC_ERWCT3.497e-3155.56Phosphoserine aminotransferase OS=Erwinia carotovo... [more]
SERC_ECOSM3.497e-3154.31Phosphoserine aminotransferase OS=Escherichia coli... [more]
SERC_ECOSE3.497e-3154.31Phosphoserine aminotransferase OS=Escherichia coli... [more]
SERC_ECOLU3.497e-3154.31Phosphoserine aminotransferase OS=Escherichia coli... [more]
SERC_ECOLI3.497e-3154.31Phosphoserine aminotransferase OS=Escherichia coli... [more]
SERC_ECOLC3.497e-3154.31Phosphoserine aminotransferase OS=Escherichia coli... [more]
SERC_ECOL63.497e-3154.31Phosphoserine aminotransferase OS=Escherichia coli... [more]

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Properties
Property NameValue
Genbank descriptionC32006D04EF RVDevelop1 Citrus clementina cDNA clone C32006D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920289 ID=FC920289; Name=FC920289; organism=Citrus clementina; type=EST; length=628bp
GAAATAAAGGCACTTGTCTCTCTTTCAACTAGCAGCTGCTAAGCCATGGC
AACGACGACATCATCACCTCACTCACTGTTTCTCCAGAACCGTAATAGCC
ACCCACTCAATAAAAACAATCTCGCATCTTTCACCAACCTTAAAAAGATC
AATTTTTTTAACACCAAAAGAGCCATTTCAGTCACCTGCTCCGCCGCATC
AGCACCAACCCAAGATCGAACGGCGGCCCAGATCCAATCCGGGCAAGAAG
ACCGGGTCTTCAACTTCGCTGCGGGCCCCGCTAATCTCCCGGAGAAAGTT
CTACTCAAGGCCCAATCGGAGCTTTACAACTGGCGCGGATCTGGCATGAG
CGTGATGGAAATGAGCCATAGAGGTAAAGAATTCAAGTCCATTATTGAAA
AAGCTGAATCGGATCTTAGAGCCCTCTTGAATATTCCCCAAGAATATTCT
GTTTTGTTCTTGCAAGGCGGCGCTACGACACAGTTCGCCGCCGTTCCATT
GAATTTGTGTACACCTAATGACCCGGTCGATTATATCGTCACCGGGTCGT
GGAGTGACAAAGCTTTTAAAGAAGCGCAAAAATTTTGCAACCCACAAGTG
ATTTGCTCTGGCAAAAGCTGAAAGTACA
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