FC920289

Overview
NameFC920289
Unique NameFC920289
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length628
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6703 contig Ccv1_Contig6703:31..658. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_ECOL5 (Phosphoserine aminotransferase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=serC PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.497e-31
Identity = 63/116 (54.31%), Postives = 79/116 (68.10%), Query Frame = 1 
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQV 600
            ++FNF++GPA LP +VL +AQ EL +W G G SVME+SHRGKEF  + E+AE D R LLN+P  Y VLF  GG   QFAAVPLN+       DY+  G W+  A KEA+K+C P V
Sbjct:    3 QIFNFSSGPAMLPAEVLKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDLLNVPSNYKVLFCHGGGRGQFAAVPLNILGDKTTADYVDAGYWAASAIKEAKKYCTPNV 118
[Close]
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_ECOHS (Phosphoserine aminotransferase OS=Escherichia coli O9:H4 (strain HS) GN=serC PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.497e-31
Identity = 63/116 (54.31%), Postives = 79/116 (68.10%), Query Frame = 1 
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQV 600
            ++FNF++GPA LP +VL +AQ EL +W G G SVME+SHRGKEF  + E+AE D R LLN+P  Y VLF  GG   QFAAVPLN+       DY+  G W+  A KEA+K+C P V
Sbjct:    3 QIFNFSSGPAMLPAEVLKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDLLNVPSNYKVLFCHGGGRGQFAAVPLNILGDKTTADYVDAGYWAASAIKEAKKYCTPNV 118
[Close]
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_ECODH (Phosphoserine aminotransferase OS=Escherichia coli (strain K12 / DH10B) GN=serC PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.497e-31
Identity = 63/116 (54.31%), Postives = 79/116 (68.10%), Query Frame = 1 
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQV 600
            ++FNF++GPA LP +VL +AQ EL +W G G SVME+SHRGKEF  + E+AE D R LLN+P  Y VLF  GG   QFAAVPLN+       DY+  G W+  A KEA+K+C P V
Sbjct:    3 QIFNFSSGPAMLPAEVLKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDLLNVPSNYKVLFCHGGGRGQFAAVPLNILGDKTTADYVDAGYWAASAIKEAKKYCTPNV 118
[Close]
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_ECOBW (Phosphoserine aminotransferase OS=Escherichia coli (strain K12 / BW2952) GN=serC PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.497e-31
Identity = 63/116 (54.31%), Postives = 79/116 (68.10%), Query Frame = 1 
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQV 600
            ++FNF++GPA LP +VL +AQ EL +W G G SVME+SHRGKEF  + E+AE D R LLN+P  Y VLF  GG   QFAAVPLN+       DY+  G W+  A KEA+K+C P V
Sbjct:    3 QIFNFSSGPAMLPAEVLKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDLLNVPSNYKVLFCHGGGRGQFAAVPLNILGDKTTADYVDAGYWAASAIKEAKKYCTPNV 118
[Close]
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_ECO8A (Phosphoserine aminotransferase OS=Escherichia coli O8 (strain IAI1) GN=serC PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.497e-31
Identity = 63/116 (54.31%), Postives = 79/116 (68.10%), Query Frame = 1 
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQV 600
            ++FNF++GPA LP +VL +AQ EL +W G G SVME+SHRGKEF  + E+AE D R LLN+P  Y VLF  GG   QFAAVPLN+       DY+  G W+  A KEA+K+C P V
Sbjct:    3 QIFNFSSGPAMLPAEVLKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDLLNVPSNYKVLFCHGGGRGQFAAVPLNILGDKTTADYVDAGYWAASAIKEAKKYCTPNV 118
[Close]
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_ECO81 (Phosphoserine aminotransferase OS=Escherichia coli O81 (strain ED1a) GN=serC PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.497e-31
Identity = 63/116 (54.31%), Postives = 79/116 (68.10%), Query Frame = 1 
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQV 600
            ++FNF++GPA LP +VL +AQ EL +W G G SVME+SHRGKEF  + E+AE D R LLN+P  Y VLF  GG   QFAAVPLN+       DY+  G W+  A KEA+K+C P V
Sbjct:    3 QIFNFSSGPAMLPAEVLKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDLLNVPSNYKVLFCHGGGRGQFAAVPLNILGDKTTADYVDAGYWAASAIKEAKKYCTPNV 118
[Close]
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_ECO7I (Phosphoserine aminotransferase OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=serC PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.497e-31
Identity = 63/116 (54.31%), Postives = 79/116 (68.10%), Query Frame = 1 
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQV 600
            ++FNF++GPA LP +VL +AQ EL +W G G SVME+SHRGKEF  + E+AE D R LLN+P  Y VLF  GG   QFAAVPLN+       DY+  G W+  A KEA+K+C P V
Sbjct:    3 QIFNFSSGPAMLPAEVLKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDLLNVPSNYKVLFCHGGGRGQFAAVPLNILGDKTTADYVDAGYWAASAIKEAKKYCTPNV 118
[Close]
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_ECO55 (Phosphoserine aminotransferase OS=Escherichia coli (strain 55989 / EAEC) GN=serC PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.497e-31
Identity = 63/116 (54.31%), Postives = 79/116 (68.10%), Query Frame = 1 
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQV 600
            ++FNF++GPA LP +VL +AQ EL +W G G SVME+SHRGKEF  + E+AE D R LLN+P  Y VLF  GG   QFAAVPLN+       DY+  G W+  A KEA+K+C P V
Sbjct:    3 QIFNFSSGPAMLPAEVLKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDLLNVPSNYKVLFCHGGGRGQFAAVPLNILGDKTTADYVDAGYWAASAIKEAKKYCTPNV 118
[Close]
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_ECO27 (Phosphoserine aminotransferase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=serC PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.497e-31
Identity = 63/116 (54.31%), Postives = 79/116 (68.10%), Query Frame = 1 
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQV 600
            ++FNF++GPA LP +VL +AQ EL +W G G SVME+SHRGKEF  + E+AE D R LLN+P  Y VLF  GG   QFAAVPLN+       DY+  G W+  A KEA+K+C P V
Sbjct:    3 QIFNFSSGPAMLPAEVLKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDLLNVPSNYKVLFCHGGGRGQFAAVPLNILGDKTTADYVDAGYWAASAIKEAKKYCTPNV 118
[Close]
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_ECO24 (Phosphoserine aminotransferase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=serC PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.497e-31
Identity = 63/116 (54.31%), Postives = 79/116 (68.10%), Query Frame = 1 
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQV 600
            ++FNF++GPA LP +VL +AQ EL +W G G SVME+SHRGKEF  + E+AE D R LLN+P  Y VLF  GG   QFAAVPLN+       DY+  G W+  A KEA+K+C P V
Sbjct:    3 QIFNFSSGPAMLPAEVLKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDLLNVPSNYKVLFCHGGGRGQFAAVPLNILGDKTTADYVDAGYWAASAIKEAKKYCTPNV 118
The following BLAST results are available for this feature:
BLAST of FC920289 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 255
Match NameE-valueIdentityDescription
SERC_ECOL53.497e-3154.31Phosphoserine aminotransferase OS=Escherichia coli... [more]
SERC_ECOHS3.497e-3154.31Phosphoserine aminotransferase OS=Escherichia coli... [more]
SERC_ECODH3.497e-3154.31Phosphoserine aminotransferase OS=Escherichia coli... [more]
SERC_ECOBW3.497e-3154.31Phosphoserine aminotransferase OS=Escherichia coli... [more]
SERC_ECO8A3.497e-3154.31Phosphoserine aminotransferase OS=Escherichia coli... [more]
SERC_ECO813.497e-3154.31Phosphoserine aminotransferase OS=Escherichia coli... [more]
SERC_ECO7I3.497e-3154.31Phosphoserine aminotransferase OS=Escherichia coli... [more]
SERC_ECO553.497e-3154.31Phosphoserine aminotransferase OS=Escherichia coli... [more]
SERC_ECO273.497e-3154.31Phosphoserine aminotransferase OS=Escherichia coli... [more]
SERC_ECO243.497e-3154.31Phosphoserine aminotransferase OS=Escherichia coli... [more]

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Properties
Property NameValue
Genbank descriptionC32006D04EF RVDevelop1 Citrus clementina cDNA clone C32006D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920289 ID=FC920289; Name=FC920289; organism=Citrus clementina; type=EST; length=628bp
GAAATAAAGGCACTTGTCTCTCTTTCAACTAGCAGCTGCTAAGCCATGGC
AACGACGACATCATCACCTCACTCACTGTTTCTCCAGAACCGTAATAGCC
ACCCACTCAATAAAAACAATCTCGCATCTTTCACCAACCTTAAAAAGATC
AATTTTTTTAACACCAAAAGAGCCATTTCAGTCACCTGCTCCGCCGCATC
AGCACCAACCCAAGATCGAACGGCGGCCCAGATCCAATCCGGGCAAGAAG
ACCGGGTCTTCAACTTCGCTGCGGGCCCCGCTAATCTCCCGGAGAAAGTT
CTACTCAAGGCCCAATCGGAGCTTTACAACTGGCGCGGATCTGGCATGAG
CGTGATGGAAATGAGCCATAGAGGTAAAGAATTCAAGTCCATTATTGAAA
AAGCTGAATCGGATCTTAGAGCCCTCTTGAATATTCCCCAAGAATATTCT
GTTTTGTTCTTGCAAGGCGGCGCTACGACACAGTTCGCCGCCGTTCCATT
GAATTTGTGTACACCTAATGACCCGGTCGATTATATCGTCACCGGGTCGT
GGAGTGACAAAGCTTTTAAAGAAGCGCAAAAATTTTGCAACCCACAAGTG
ATTTGCTCTGGCAAAAGCTGAAAGTACA
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