FC920294

Overview
NameFC920294
Unique NameFC920294
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length656
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15273 contig Ccv1_Contig15273:22..677. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920294 vs. ExPASy Swiss-Prot
Match: MEF2C_BOVIN (Myocyte-specific enhancer factor 2C OS=Bos taurus GN=MEF2C PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.014e-15
Identity = 40/74 (54.05%), Postives = 58/74 (78.38%), Query Frame = 2
Query:   29 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCN 250
            MGR ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ M K L +Y + N
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQY-ASTDMDKVLLKYTEYN 73          
BLAST of FC920294 vs. ExPASy Swiss-Prot
Match: MEF2A_XENLA (Myocyte-specific enhancer factor 2A homolog OS=Xenopus laevis GN=mef2a PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 5.014e-15
Identity = 40/74 (54.05%), Postives = 58/74 (78.38%), Query Frame = 2
Query:   29 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCN 250
            MGR ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ M K L +Y + N
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQY-ASTDMDKVLLKYTEYN 73          
BLAST of FC920294 vs. ExPASy Swiss-Prot
Match: MEF2A_PONAB (Myocyte-specific enhancer factor 2A OS=Pongo abelii GN=MEF2A PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.014e-15
Identity = 40/74 (54.05%), Postives = 58/74 (78.38%), Query Frame = 2
Query:   29 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCN 250
            MGR ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ M K L +Y + N
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQY-ASTDMDKVLLKYTEYN 73          
BLAST of FC920294 vs. ExPASy Swiss-Prot
Match: MEF2A_MOUSE (Myocyte-specific enhancer factor 2A OS=Mus musculus GN=Mef2a PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 5.014e-15
Identity = 40/74 (54.05%), Postives = 58/74 (78.38%), Query Frame = 2
Query:   29 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCN 250
            MGR ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ M K L +Y + N
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQY-ASTDMDKVLLKYTEYN 73          
BLAST of FC920294 vs. ExPASy Swiss-Prot
Match: MEF2A_CHICK (Myocyte-specific enhancer factor 2A OS=Gallus gallus GN=MEF2A PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.014e-15
Identity = 40/74 (54.05%), Postives = 58/74 (78.38%), Query Frame = 2
Query:   29 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCN 250
            MGR ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ M K L +Y + N
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQY-ASTDMDKVLLKYTEYN 73          
BLAST of FC920294 vs. ExPASy Swiss-Prot
Match: MEF2B_HUMAN (Myocyte-specific enhancer factor 2B OS=Homo sapiens GN=MEF2B PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.905e-14
Identity = 41/89 (46.07%), Postives = 64/89 (71.91%), Query Frame = 2
Query:   29 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALE 295
            MGR ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  +L+++ +S+ M + L +Y +  Y  P  + +  + LE
Sbjct:    1 MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQY-ASTDMDRVLLKYTE--YSEPHESRTNTDILE 86          
BLAST of FC920294 vs. ExPASy Swiss-Prot
Match: MEF2B_MOUSE (Myocyte-specific enhancer factor 2B OS=Mus musculus GN=Mef2b PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.240e-14
Identity = 40/89 (44.94%), Postives = 64/89 (71.91%), Query Frame = 2
Query:   29 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALE 295
            MGR ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD ++ALIIF++  +L+++ +SS M + L +Y +  Y  P  + +  + L+
Sbjct:    1 MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCDIALIIFNSAQRLFQY-ASSDMDRVLLKYTE--YSEPHESRTNADILQ 86          
BLAST of FC920294 vs. ExPASy Swiss-Prot
Match: RLM1_YEAST (Transcription factor RLM1 OS=Saccharomyces cerevisiae GN=RLM1 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.785e-11
Identity = 31/59 (52.54%), Postives = 42/59 (71.19%), Query Frame = 2
Query:   29 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 205
            MGR ++E++RI +  NR VTF KR+ GL KKA+ELSVLC  ++A+II  +    YEF S
Sbjct:    1 MGRRKIEIQRISDDRNRAVTFIKRKAGLFKKAHELSVLCQVDIAVIILGSNNTFYEFSS 59          
BLAST of FC920294 vs. ExPASy Swiss-Prot
Match: PVG4_SCHPO (MADS-box transcription factor pvg4 OS=Schizosaccharomyces pombe GN=pvg4 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.785e-11
Identity = 35/79 (44.30%), Postives = 48/79 (60.76%), Query Frame = 2
Query:   29 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSS-----SMLKTLERYQKCN 250
            MGR ++ +  I +  +R VTF KR+ GL KKAYEL+VL D EVA+ +   +G+L+ FCSS        L TL  Y+  N
Sbjct:    1 MGRKKISIAPITDDRSRSVTFVKRKQGLYKKAYELAVLADCEVAVTVIDRKGRLHVFCSSDYQRTLQQLNTLSIYELKN 79          
The following BLAST results are available for this feature:
BLAST of FC920294 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
MEF2C_BOVIN5.014e-1554.05Myocyte-specific enhancer factor 2C OS=Bos taurus ... [more]
MEF2A_XENLA5.014e-1554.05Myocyte-specific enhancer factor 2A homolog OS=Xen... [more]
MEF2A_PONAB5.014e-1554.05Myocyte-specific enhancer factor 2A OS=Pongo abeli... [more]
MEF2A_MOUSE5.014e-1554.05Myocyte-specific enhancer factor 2A OS=Mus musculu... [more]
MEF2A_CHICK5.014e-1554.05Myocyte-specific enhancer factor 2A OS=Gallus gall... [more]
MEF2B_HUMAN1.905e-1446.07Myocyte-specific enhancer factor 2B OS=Homo sapien... [more]
MEF2B_MOUSE7.240e-1444.94Myocyte-specific enhancer factor 2B OS=Mus musculu... [more]
RLM1_YEAST9.785e-1152.54Transcription factor RLM1 OS=Saccharomyces cerevis... [more]
PVG4_SCHPO9.785e-1144.30MADS-box transcription factor pvg4 OS=Schizosaccha... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32006D10EF RVDevelop1 Citrus clementina cDNA clone C32006D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920294 ID=FC920294; Name=FC920294; organism=Citrus clementina; type=EST; length=656bp
GCCGGGGGAGAAAGAAAGGACGAAGAAAATGGGAAGGGGTAGGGTTGAGT
TGAAGAGGATAGAGAACAAGATCAACAGGCAAGTGACCTTTGCAAAGAGA
AGAAATGGCCTTTTGAAGAAAGCTTATGAGCTTTCCGTTCTTTGTGATGC
TGAGGTTGCTCTCATCATTTTCTCCAATAGAGGAAAGCTGTACGAGTTTT
GCAGTAGTTCAAGCATGCTCAAAACGCTTGAGAGGTACCAGAAGTGCAAC
TATGGAGCACCAGAACCGAATGTGTCCGCAAGGGAGGCCCTGGAGCTAAG
TAGCCAGCAAGAATATCTGAAGCTTAAAGCACGATATGAAGCCCTACAGA
GATCCCAAAGGAATCTCCTTGGAGAAGAACTCGGCCCTCTAAACAGCAAA
GAGCTTGAGTCACTTGAAAGGCAGCTTGATATGTCATTGAAGCAGATCAG
ATCAACAAGAACTCAGTACATGCTGGATACCCTTACTGAACTGCAACATA
AGGAACAGTTGCTGAGCGAAGCAAATAAGACCCTCAAACAAAGGTTGATG
GAGGGATACCAAGTGAACACACTTCAATTGAATCCTAGTGCAGAAGATTG
TGGTTATGGGCTTAAACCAGCTCAACCTCAGGGCGATACCTTCTTTCACG
CCTTGG
back to top