FC920299

Overview
NameFC920299
Unique NameFC920299
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length683
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14115 contig Ccv1_Contig14115:1..683. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC920299 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.225e-36
Identity = 69/74 (93.24%), Postives = 71/74 (95.95%), Query Frame = 2 
Query:  446 YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSRNGV 667
            YGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+LSRNGV
Sbjct:   48 YGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV 121
[Close]
BLAST of FC920299 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.225e-36
Identity = 69/74 (93.24%), Postives = 71/74 (95.95%), Query Frame = 2 
Query:  446 YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSRNGV 667
            YGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+LSRNGV
Sbjct:   47 YGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV 120
[Close]
BLAST of FC920299 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.225e-36
Identity = 69/74 (93.24%), Postives = 71/74 (95.95%), Query Frame = 2 
Query:  446 YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSRNGV 667
            YGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+LSRNGV
Sbjct:   40 YGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV 113
[Close]
BLAST of FC920299 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.518e-36
Identity = 68/74 (91.89%), Postives = 72/74 (97.30%), Query Frame = 2 
Query:  446 YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSRNGV 667
            YGPDR KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETF+KNRELEVIHSRWAMLGALGCVFPE+LSRNGV
Sbjct:   53 YGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGV 126
[Close]
BLAST of FC920299 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.518e-36
Identity = 68/74 (91.89%), Postives = 72/74 (97.30%), Query Frame = 2 
Query:  446 YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSRNGV 667
            YGPDR KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETF+KNRELEVIHSRWAMLGALGCVFPE+LSRNGV
Sbjct:   54 YGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGV 127
[Close]
BLAST of FC920299 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.207e-36
Identity = 68/74 (91.89%), Postives = 71/74 (95.95%), Query Frame = 2 
Query:  446 YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSRNGV 667
            YGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+L+RNGV
Sbjct:   49 YGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 122
[Close]
BLAST of FC920299 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 9.413e-36
Identity = 68/74 (91.89%), Postives = 71/74 (95.95%), Query Frame = 2 
Query:  446 YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSRNGV 667
            YGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+L+RNGV
Sbjct:   30 YGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 103
[Close]
BLAST of FC920299 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.606e-35
Identity = 67/74 (90.54%), Postives = 71/74 (95.95%), Query Frame = 2 
Query:  446 YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSRNGV 667
            YGPDR KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L+RNGV
Sbjct:   49 YGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGV 122
[Close]
BLAST of FC920299 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.606e-35
Identity = 66/74 (89.19%), Postives = 71/74 (95.95%), Query Frame = 2 
Query:  446 YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSRNGV 667
            YGPDRPKYLGPFSE TPSYLTGEFPGDYGWDTA +SADPETFAKNRELEVIH RWAMLGALGCVFPE+L++NG+
Sbjct:   51 YGPDRPKYLGPFSEGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGL 124
[Close]
BLAST of FC920299 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.097e-35
Identity = 67/74 (90.54%), Postives = 71/74 (95.95%), Query Frame = 2 
Query:  446 YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSRNGV 667
            YGPDR KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L+RNGV
Sbjct:   52 YGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 125
The following BLAST results are available for this feature:
BLAST of FC920299 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
CB23_SOYBN4.225e-3693.24Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB21_MAIZE4.225e-3693.24Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB21_CUCSA4.225e-3693.24Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB28_PEA5.518e-3691.89Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB22_PEA5.518e-3691.89Chlorophyll a-b binding protein AB80, chloroplasti... [more]
CB23_APIGR7.207e-3691.89Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_SOYBN9.413e-3691.89Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB22_HORVU1.606e-3590.54Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_PINTH1.606e-3589.19Chlorophyll a-b binding protein type I, chloroplas... [more]
CB2G_SOLLC2.097e-3590.54Chlorophyll a-b binding protein 3C, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionC32006E03EF RVDevelop1 Citrus clementina cDNA clone C32006E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920299 ID=FC920299; Name=FC920299; organism=Citrus clementina; type=EST; length=683bp
GAGTGCGAAAAGAATCTTCAGCAACAAAAAGAAAAGCTTTCGCATAAGAA
CATATGGCAACCTCTGCTATCCAACACTCAGCATTTGCTGGCCAGACCGC
CTTGAGGCAATCCAATGAGTTTGTCCGCAAGGTTGGAGTTGCTGACGGTG
GCCGTATCACCATGAGGAGGACTGTCAAATCCACTCCCCAGAGCATCTGG
TAACTACATTTTACACATTCTTAGTTGCTAAGCTTGCTTGTGTTATTGCT
TCTTTATCAAGCATGGCATGCATGTTTGATTTTGGTTACCGATATGCCAT
TAGTTTTCAGCTTATGTAAAAATAAATAAAGAGATCAGACATAACTTCAA
TTTAAAACAAAAAGCTCTAGGCGCAAGAAAAATTGTAATTCTAGCGTAAG
CAGTCTCAAGTATCTGATCAAAGAAACCTGTAATCGACAAACAGGTACGG
CCCAGACCGCCCAAAGTACTTGGGACCATTCTCTGAGCAAACACCATCAT
ACTTGACTGGTGAGTTCCCTGGTGACTATGGCTGGGATACCGCTGGTTTA
TCAGCAGACCCCGAGACATTTGCTAAGAACCGTGAGCTAGAGGTGATCCA
CAGCAGATGGGCAATGCTTGGAGCTCTTGGCTGCGTCTTCCCTGAAATCC
TCTCCAGAAATGGAGTGAGTTCGGCGAAGCAGT
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