FC920299

Overview
NameFC920299
Unique NameFC920299
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length683
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14115 contig Ccv1_Contig14115:1..683. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC920299 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.097e-35
Identity = 67/74 (90.54%), Postives = 71/74 (95.95%), Query Frame = 2 
Query:  446 YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSRNGV 667
            YGPDR KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L+RNGV
Sbjct:   50 YGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 123
[Close]
BLAST of FC920299 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.097e-35
Identity = 67/74 (90.54%), Postives = 71/74 (95.95%), Query Frame = 2 
Query:  446 YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSRNGV 667
            YGPDR KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L+RNGV
Sbjct:   52 YGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 125
[Close]
BLAST of FC920299 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.097e-35
Identity = 67/74 (90.54%), Postives = 71/74 (95.95%), Query Frame = 2 
Query:  446 YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSRNGV 667
            YGPDR KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L+RNGV
Sbjct:   52 YGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 125
[Close]
BLAST of FC920299 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.097e-35
Identity = 67/74 (90.54%), Postives = 71/74 (95.95%), Query Frame = 2 
Query:  446 YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSRNGV 667
            YGPDR KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L+RNGV
Sbjct:   51 YGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 124
[Close]
BLAST of FC920299 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.097e-35
Identity = 67/74 (90.54%), Postives = 71/74 (95.95%), Query Frame = 2 
Query:  446 YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSRNGV 667
            YGPDR KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L+RNGV
Sbjct:   52 YGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 125
[Close]
BLAST of FC920299 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.097e-35
Identity = 67/74 (90.54%), Postives = 71/74 (95.95%), Query Frame = 2 
Query:  446 YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSRNGV 667
            YGPDR KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L+RNGV
Sbjct:   50 YGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 123
[Close]
BLAST of FC920299 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.097e-35
Identity = 67/74 (90.54%), Postives = 71/74 (95.95%), Query Frame = 2 
Query:  446 YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSRNGV 667
            YGPDR KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L+RNGV
Sbjct:   51 YGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 124
[Close]
BLAST of FC920299 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.739e-35
Identity = 67/74 (90.54%), Postives = 70/74 (94.59%), Query Frame = 2 
Query:  446 YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSRNGV 667
            YGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L+RNGV
Sbjct:   52 YGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 125
[Close]
BLAST of FC920299 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 4.672e-35
Identity = 67/74 (90.54%), Postives = 70/74 (94.59%), Query Frame = 2 
Query:  446 YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSRNGV 667
            YGPDR  YLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+L+RNGV
Sbjct:   63 YGPDRVMYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 136
[Close]
BLAST of FC920299 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.101e-35
Identity = 67/74 (90.54%), Postives = 70/74 (94.59%), Query Frame = 2 
Query:  446 YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSRNGV 667
            YGPDR  YLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+L+RNGV
Sbjct:   63 YGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 136
The following BLAST results are available for this feature:
BLAST of FC920299 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
CB2B_SOLLC2.097e-3590.54Chlorophyll a-b binding protein 1B, chloroplastic ... [more]
CB2A_SPIOL2.097e-3590.54Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB25_TOBAC2.097e-3590.54Chlorophyll a-b binding protein 50, chloroplastic ... [more]
CB25_NICPL2.097e-3590.54Chlorophyll a-b binding protein E, chloroplastic O... [more]
CB24_TOBAC2.097e-3590.54Chlorophyll a-b binding protein 40, chloroplastic ... [more]
CB22_TOBAC2.097e-3590.54Chlorophyll a-b binding protein 21, chloroplastic ... [more]
CB21_TOBAC2.097e-3590.54Chlorophyll a-b binding protein 16, chloroplastic ... [more]
CB27_TOBAC2.739e-3590.54Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB2A_PYRPY4.672e-3590.54Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB2A_PINSY6.101e-3590.54Chlorophyll a-b binding protein type 2 member 1A, ... [more]

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Properties
Property NameValue
Genbank descriptionC32006E03EF RVDevelop1 Citrus clementina cDNA clone C32006E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920299 ID=FC920299; Name=FC920299; organism=Citrus clementina; type=EST; length=683bp
GAGTGCGAAAAGAATCTTCAGCAACAAAAAGAAAAGCTTTCGCATAAGAA
CATATGGCAACCTCTGCTATCCAACACTCAGCATTTGCTGGCCAGACCGC
CTTGAGGCAATCCAATGAGTTTGTCCGCAAGGTTGGAGTTGCTGACGGTG
GCCGTATCACCATGAGGAGGACTGTCAAATCCACTCCCCAGAGCATCTGG
TAACTACATTTTACACATTCTTAGTTGCTAAGCTTGCTTGTGTTATTGCT
TCTTTATCAAGCATGGCATGCATGTTTGATTTTGGTTACCGATATGCCAT
TAGTTTTCAGCTTATGTAAAAATAAATAAAGAGATCAGACATAACTTCAA
TTTAAAACAAAAAGCTCTAGGCGCAAGAAAAATTGTAATTCTAGCGTAAG
CAGTCTCAAGTATCTGATCAAAGAAACCTGTAATCGACAAACAGGTACGG
CCCAGACCGCCCAAAGTACTTGGGACCATTCTCTGAGCAAACACCATCAT
ACTTGACTGGTGAGTTCCCTGGTGACTATGGCTGGGATACCGCTGGTTTA
TCAGCAGACCCCGAGACATTTGCTAAGAACCGTGAGCTAGAGGTGATCCA
CAGCAGATGGGCAATGCTTGGAGCTCTTGGCTGCGTCTTCCCTGAAATCC
TCTCCAGAAATGGAGTGAGTTCGGCGAAGCAGT
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