FC920299

Overview
NameFC920299
Unique NameFC920299
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length683
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14115 contig Ccv1_Contig14115:1..683. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920299 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.719e-29
Identity = 59/64 (92.19%), Postives = 61/64 (95.31%), Query Frame = 2
Query:  476 PFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSRNGV 667
            PFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHS WAMLGALGCVFPE+LSRNGV
Sbjct:    1 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSTWAMLGALGCVFPELLSRNGV 64          
BLAST of FC920299 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.246e-29
Identity = 59/74 (79.73%), Postives = 62/74 (83.78%), Query Frame = 2
Query:  446 YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSRNGV 667
            YG DR  YLGP S   PSYLTGEFPGDYGWDT GLSADPETFAKNRELEVIH RWA+   LGCVFPE+L+RNGV
Sbjct:   49 YGADRVLYLGPLSGSPPSYLTGEFPGDYGWDTEGLSADPETFAKNRELEVIHCRWAIAVGLGCVFPELLARNGV 122          
BLAST of FC920299 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.533e-29
Identity = 57/70 (81.43%), Postives = 63/70 (90.00%), Query Frame = 2
Query:  446 YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILS 655
            YGPDR K+LGPFS  TP+YLTGEFPGDYGWDTAGLSADPETF K RELEVIH+RWA+LGALG + PE+LS
Sbjct:   40 YGPDRAKWLGPFSTNTPAYLTGEFPGDYGWDTAGLSADPETFKKYRELEVIHARWALLGALGILTPELLS 109          
BLAST of FC920299 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.483e-28
Identity = 56/74 (75.68%), Postives = 67/74 (90.54%), Query Frame = 2
Query:  446 YGPDRPKYLGPFSEQ-TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSRNG 664
            YGP+R K+LGP+SE  TP+YLTGEFPGDYGWDTAGLSADPETF + RELE+IH+RWAMLGALGC  PE+L+++G
Sbjct:   37 YGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCQTPELLAKSG 110          
BLAST of FC920299 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.609e-27
Identity = 55/72 (76.39%), Postives = 65/72 (90.28%), Query Frame = 2
Query:  446 YGPDRPKYLGPFSEQ-TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSR 658
            YGPDR K+LGPFSE  TP YLTGEFPGDYGWDTAGLSADP+TFA+ RE+E+IH+RWA+LGALG + PE+LS+
Sbjct:   34 YGPDRAKFLGPFSENDTPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQ 105          
BLAST of FC920299 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.043e-26
Identity = 59/74 (79.73%), Postives = 62/74 (83.78%), Query Frame = 2
Query:  446 YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSRNGV 667
            YGPDR KYLGPFS + PSYLTGEF G        LSADPETFAKNRELEVIHSRWAMLGALGCVFPE+L+RNGV
Sbjct:   49 YGPDRVKYLGPFSGEAPSYLTGEFHG--------LSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 114          
BLAST of FC920299 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.362e-26
Identity = 57/69 (82.61%), Postives = 60/69 (86.96%), Query Frame = 2
Query:  458 RPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSRNG 664
            R KYLGPFS + PSYLTGEFPGDYGWDTAGLSA PETFAKNRELEVIHSR AM  ALGC+FPE+LS  G
Sbjct:   58 RVKYLGPFSGEWPSYLTGEFPGDYGWDTAGLSAYPETFAKNRELEVIHSRCAMSAALGCIFPELLSVMG 126          
BLAST of FC920299 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.575e-17
Identity = 44/70 (62.86%), Postives = 50/70 (71.43%), Query Frame = 2
Query:  446 YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILS 655
            YGPD          Q P   TGEFPGDYGWDTAGLSADPETF + RELE+IH+R  +LGALG V PE+L+
Sbjct:   58 YGPDATSGWD-LQHQHPRLPTGEFPGDYGWDTAGLSADPETFKRYRELELIHARCGLLGALGMVTPELLA 126          
BLAST of FC920299 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.937e-14
Identity = 38/78 (48.72%), Postives = 48/78 (61.54%), Query Frame = 2
Query:  446 YGPDRPKYLGPF---SEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSRNGVS 670
            YGPDR  +L        + P YL GE  GDYG+D  GL   PE FAK +  E+IH+RWAMLGA G + PE L++ G +
Sbjct:   63 YGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGAN 140          
BLAST of FC920299 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.573e-13
Identity = 34/72 (47.22%), Postives = 45/72 (62.50%), Query Frame = 2
Query:  452 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSRNGV 667
            PDRP +        P +L G  PGD+G+D  GL +DPE+   N + E++HSRWAMLGA G   PE L++ GV
Sbjct:   63 PDRPLWFP--GSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGV 132          
The following BLAST results are available for this feature:
BLAST of FC920299 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
CB22_CUCSA1.719e-2992.19Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB48_MAIZE2.246e-2979.73Chlorophyll a-b binding protein 48, chloroplastic ... [more]
CB2_CHLMO8.533e-2981.43Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_CHLRE2.483e-2875.68Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_DUNTE1.609e-2776.39Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB22_SOYBN1.043e-2679.73Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB2_MALDO1.362e-2682.61Chlorophyll a-b binding protein AB10, chloroplasti... [more]
CB2_DUNSA2.575e-1762.86Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB26_ARATH5.937e-1448.72Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB12_PETHY8.573e-1347.22Chlorophyll a-b binding protein, chloroplastic OS=... [more]

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Properties
Property NameValue
Genbank descriptionC32006E03EF RVDevelop1 Citrus clementina cDNA clone C32006E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920299 ID=FC920299; Name=FC920299; organism=Citrus clementina; type=EST; length=683bp
GAGTGCGAAAAGAATCTTCAGCAACAAAAAGAAAAGCTTTCGCATAAGAA
CATATGGCAACCTCTGCTATCCAACACTCAGCATTTGCTGGCCAGACCGC
CTTGAGGCAATCCAATGAGTTTGTCCGCAAGGTTGGAGTTGCTGACGGTG
GCCGTATCACCATGAGGAGGACTGTCAAATCCACTCCCCAGAGCATCTGG
TAACTACATTTTACACATTCTTAGTTGCTAAGCTTGCTTGTGTTATTGCT
TCTTTATCAAGCATGGCATGCATGTTTGATTTTGGTTACCGATATGCCAT
TAGTTTTCAGCTTATGTAAAAATAAATAAAGAGATCAGACATAACTTCAA
TTTAAAACAAAAAGCTCTAGGCGCAAGAAAAATTGTAATTCTAGCGTAAG
CAGTCTCAAGTATCTGATCAAAGAAACCTGTAATCGACAAACAGGTACGG
CCCAGACCGCCCAAAGTACTTGGGACCATTCTCTGAGCAAACACCATCAT
ACTTGACTGGTGAGTTCCCTGGTGACTATGGCTGGGATACCGCTGGTTTA
TCAGCAGACCCCGAGACATTTGCTAAGAACCGTGAGCTAGAGGTGATCCA
CAGCAGATGGGCAATGCTTGGAGCTCTTGGCTGCGTCTTCCCTGAAATCC
TCTCCAGAAATGGAGTGAGTTCGGCGAAGCAGT
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