FC920306

Overview
NameFC920306
Unique NameFC920306
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length596
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6036 contig Ccv1_Contig6036:62..657. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920306 vs. ExPASy Swiss-Prot
Match: LDOX_MALDO (Leucoanthocyanidin dioxygenase OS=Malus domestica GN=ANS PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.495e-28
Identity = 65/187 (34.76%), Postives = 100/187 (53.48%), Query Frame = 2
Query:   68 RVQAIASLSHSNGTIPAEFVRPEKE-----QPASATYHGPAPEIPTIDL------DDPVQDRLVRSIAEASREWGIFQVTNHGIPSDLIGKLQAVGKEFFELPQEEKEVYSRPADAKDVQGYGTKLQKEVEGKKSWVDHLFHRVWPPSSINYRFWPNNPPSYRAVNEEYAKYMREVVDKLFTYLSLG 595
            RV+ +A    S  TIP E++RP+ E            +   P++PTIDL      ++ V+ +    + +A+ +WG+  + NHGI  +L+ K++  GK FF+LP E+KE Y+    +  +QGYG+KL     G+  W D+ FH V+P    +   WP  P  Y     EYAK +RE+  K+   LSLG
Sbjct:   10 RVETLAGSGIS--TIPKEYIRPKDELVNIGDIFEQEKNNEGPQVPTIDLKEIESDNEKVRAKCREKLKKAAVDWGVMHLVNHGISDELMDKVRKAGKAFFDLPIEQKEKYANDQASGKIQGYGSKLANNASGQLEWEDYFFHCVYPEDKRDLSIWPQTPADYIEATAEYAKQLRELATKVLKVLSLG 194          
BLAST of FC920306 vs. ExPASy Swiss-Prot
Match: LDOX_PETHY (Leucoanthocyanidin dioxygenase OS=Petunia hybrida GN=ANT17 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.238e-27
Identity = 62/172 (36.05%), Postives = 93/172 (54.07%), Query Frame = 2
Query:  110 IPAEFVRPEKEQPASATYH-----GPAPEIPTIDLDD-PVQDRLVRS----IAEASREWGIFQVTNHGIPSDLIGKLQAVGKEFFELPQEEKEVYSRPADAKDVQGYGTKLQKEVEGKKSWVDHLFHRVWPPSSINYRFWPNNPPSYRAVNEEYAKYMREVVDKLFTYLSLG 595
            IP E+VRP++E                P++PTIDL +   +D+ +R     + +A+ EWG+  + NHGI  +LI +++  G+ FF+ P EEKE Y+      +VQGYG+KL     G+  W D+ FH  +P    +   WP NP  Y     EYAK +R +  K+ T LS+G
Sbjct:   23 IPKEYVRPQEELNGIGNIFEEEKKDEGPQVPTIDLKEIDSEDKEIREKCHQLKKAAMEWGVMHLVNHGISDELINRVKVAGETFFDQPVEEKEKYANDQANGNVQGYGSKLANSACGQLEWEDYFFHCAFPEDKRDLSIWPKNPTDYTPATSEYAKQIRALATKILTVLSIG 194          
BLAST of FC920306 vs. ExPASy Swiss-Prot
Match: LDOX_VITVI (Leucoanthocyanidin dioxygenase OS=Vitis vinifera PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.112e-27
Identity = 62/188 (32.98%), Postives = 97/188 (51.60%), Query Frame = 2
Query:   80 IASLSHSN-GTIPAEFVRPEKEQPASATYH-----GPAPEIPTIDLDD----------PVQDRLVRSIAEASREWGIFQVTNHGIPSDLIGKLQAVGKEFFELPQEEKEVYSRPADAKDVQGYGTKLQKEVEGKKSWVDHLFHRVWPPSSINYRFWPNNPPSYRAVNEEYAKYMREVVDKLFTYLSLG 595
            + SLS S   +IP E++RP++E  +             P++PTIDL D           +++R    + +A+ EWG+  + NHGI  DLI +++  G+ FF LP EEKE Y+    +  + GYG+KL     G+  W D+ FH ++P    +   WP  P  Y     EY+  +R +  K+ + LSLG
Sbjct:    9 VESLSSSGIQSIPKEYIRPQEELTSIGNVFEEEKKDEGPQVPTIDLKDIESEDEVVRREIRERCREELKKAAMEWGVMHLVNHGISDDLINRVKVAGETFFNLPMEEKEKYANDQASGKIAGYGSKLANNASGQLEWEDYFFHLIFPEDKRDMTIWPKTPSDYVPATCEYSVKLRSLATKILSVLSLG 196          
BLAST of FC920306 vs. ExPASy Swiss-Prot
Match: LDOX_MAIZE (Leucoanthocyanidin dioxygenase OS=Zea mays GN=A2 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 5.203e-26
Identity = 66/193 (34.20%), Postives = 100/193 (51.81%), Query Frame = 2
Query:   68 RVQAIASLSHSNGTIPAEFVRPEKEQPAS------ATYHG---PAPEIPTID----LDDPVQ----DRLVRSIAEASREWGIFQVTNHGIPSDLIGKLQAVGKEFFELPQEEKEVYSRPADAKDVQGYGTKLQKEVEGKKSWVDHLFHRVWPPSSINYRFWPNNPPSYRAVNEEYAKYMREVVDKLFTYLSLG 595
            RV+A++    S   IP E+VRP  E+         A  H     AP IP +D    LD   Q    D  V ++  A+ +WG+  +  HGIP++L+ +L+A G  FF LP ++KE Y+    A  +QGYG++L     G++ W D+LFH V P    ++  WP  PP Y A   ++ +  R++   L   LS+G
Sbjct:   13 RVEALSLSGLS--AIPPEYVRPADERAGLGDAFDLARTHANDHTAPRIPVVDISPFLDSSSQQQQRDECVEAVRAAAADWGVMHIAGHGIPAELMDRLRAAGTAFFALPVQDKEAYANDPAAGRLQGYGSRLATNTCGQREWEDYLFHLVHPDGLADHALWPAYPPDYIAATRDFGRRTRDLASTLLAILSMG 203          
BLAST of FC920306 vs. ExPASy Swiss-Prot
Match: FL3H_VITVI (Naringenin,2-oxoglutarate 3-dioxygenase OS=Vitis vinifera GN=F3H PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.612e-19
Identity = 56/167 (33.53%), Postives = 87/167 (52.10%), Query Frame = 2
Query:  107 TIPAEFVRPEKEQPASATYHGPAPEIPTIDLDDP------VQDRLVRSIAEASREWGIFQVTNHGIPSDLIGKLQAVGKEFFELPQEEKEVYSRPADAKDVQGYGTKLQKEVEGKKSWVDHLFHRVWPPSSINYRFWPNNPPSYRAVNEEYAKYMREVVDKLFTYLS 589
            T+ + FVR E E+P  A Y+  + EIP I L         V D + R I EA  +WGIFQV NHG+ S+LI ++  + +EFF LP EE   +      K   G+      + E  + W + + +  +P  + +Y  WP+ P  +R+V +EY++ +  +  KL   LS
Sbjct:   14 TLQSSFVRDEDERPKVA-YNDFSNEIPVISLTKESMKLAAVVDEICRKIVEACEDWGIFQVVNHGVDSNLISEMTRLAREFFALPPEENVRFDMSGGKKG--GFIVSSHLQGEAVQDWREIVTYFSYPLRTRDYSRWPDKPEGWRSVTQEYSEKLMGLACKLLEVLS 177          
BLAST of FC920306 vs. ExPASy Swiss-Prot
Match: FL3H_PETCR (Flavanone 3-dioxygenase OS=Petroselinum crispum GN=FHT PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.792e-18
Identity = 57/167 (34.13%), Postives = 88/167 (52.69%), Query Frame = 2
Query:  107 TIPAEFVRPEKEQPASATYHGPAPEIPTIDL----DDPVQDR--LVRSIAEASREWGIFQVTNHGIPSDLIGKLQAVGKEFFELPQEEKEVYSRPADAKDVQGYGTKLQKEVEGKKSWVDHLFHRVWPPSSINYRFWPNNPPSYRAVNEEYAKYMREVVDKLFTYLS 589
            T+ ++FVR E E+P  A Y+  + EIP I L    DD V  R  + R I EA  +WGIFQV +HGI  DLI ++  + ++FF LP EEK  +      K   G+      + E  + W + + +  +P  + +Y  WP+ P  +R++ E Y+  +  +  KL   LS
Sbjct:   14 TLNSKFVRDEDERPKIA-YNKFSDEIPVISLAGIDDDSVDKRSQICRKIVEACEDWGIFQVVDHGIDIDLISEMTRLARQFFALPAEEKLRFDMTGGKKG--GFIVSSHLQGEAVQDWREIVTYFSYPIQARDYSRWPDKPEGWRSITEMYSDELMALACKLLEVLS 177          
BLAST of FC920306 vs. ExPASy Swiss-Prot
Match: NCS1_COPJA (S-norcoclaurine synthase 1 OS=Coptis japonica GN=NCS1 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.517e-17
Identity = 55/173 (31.79%), Postives = 83/173 (47.98%), Query Frame = 2
Query:   56 MEVERVQAIASLSHSNGTIPAEFVRPEKEQPASATYHGPAPEIPTIDLDDPVQDRL----VRSIAEASREWGIFQVTNHGIPSDLIGKLQAVGKEFFELPQEEKEVYSRPADAKDVQGYGTKLQKEVEGKKSWVDHLFHRVWPPSSINYRFWPNNPPSYRAVNEEYAKYMREV 562
            + VE VQ +A     N  +P  +VRPE E            EIP IDL   +  +     +     A  +WG FQ+ NHG+  ++I K++   ++FF LP +EK  Y +  +   ++GYG       E K  W D  F    P    N RFWP +P S+R   E+Y+  +++V
Sbjct:   12 LPVENVQVLAGKELKN--LPNRYVRPELEHDDVVPIDNSL-EIPVIDLSRLLDQQYACDELAKFHSACLDWGFFQLINHGVREEVIEKMKVDTEDFFRLPFKEKNAYRQLPNG--MEGYGQAFVTSEEQKLDWADMHFLITKPVQERNMRFWPTSPTSFRETMEKYSMELQKV 179          
BLAST of FC920306 vs. ExPASy Swiss-Prot
Match: FL3H_DIACA (Naringenin,2-oxoglutarate 3-dioxygenase OS=Dianthus caryophyllus GN=FHT PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.517e-17
Identity = 59/181 (32.60%), Postives = 91/181 (50.28%), Query Frame = 2
Query:   56 MEVERVQAIASLSHSNGTIPAEFVRPEKEQPASATYHGPAPEIPTIDL---DDPVQDRLVRSIAEASREWGIFQVTNHGIPSDLIGKLQAVGKEFFELPQEEKEVYSRPADAKDVQGYGTKLQKEVEGKKSWVDHLFHRVWPPSSINYRFWPNNPPSYRAVNEEYAKYMREVVDKLFTYLS 589
            M  E+ + + SL   +  + + FVR E E+P  A Y+  + +IP I L   D   +  + R I EA  +WGIFQV +HG+  DLI  +  + +EFF LP EEK  +      K      + LQ EV   + W + + +  +P +S +Y  WP+ P  +  V EEY+  +  +   L   LS
Sbjct:    1 MVAEKPKTLTSLE-GDDKLNSNFVRDEDERPKVA-YNEFSNDIPVISLAGIDGEKRGEICRKIVEACEDWGIFQVVDHGVGDDLIADMTRLAREFFALPAEEKLRFDMSGGKKGGFIVSSHLQGEV--VQDWREIVTYFSYPTNSRDYTRWPDKPEGWIKVTEEYSNKLMTLACTLLGVLS 177          
BLAST of FC920306 vs. ExPASy Swiss-Prot
Match: FNSI_PETCR (Flavone synthase OS=Petroselinum crispum GN=FNSI PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 9.836e-17
Identity = 57/167 (34.13%), Postives = 85/167 (50.90%), Query Frame = 2
Query:  107 TIPAEFVRPEKEQPASATYHGPAPEIPTIDL---DDPVQDR---LVRSIAEASREWGIFQVTNHGIPSDLIGKLQAVGKEFFELPQEEKEVYSRPADAKDVQGYGTKLQKEVEGKKSWVDHLFHRVWPPSSINYRFWPNNPPSYRAVNEEYAKYMREVVDKLFTYLS 589
            T+  +FVR E E+P  A Y+  + EIP I L   DD    R   + R I +A  +WGIFQV +HGI S LI ++  + +EFF LP EEK  Y      +      T LQ   +    W + + +  +P ++ +Y  WP  P  +R+  E Y++ +  +  KL   LS
Sbjct:   14 TLNLDFVRDEDERPKVA-YNQFSNEIPIISLAGLDDDSDGRRPEICRKIVKACEDWGIFQVVDHGIDSGLISEMTRLSREFFALPAEEKLEYDTTGGKRGGFTISTVLQG--DDAMDWREFVTYFSYPINARDYSRWPKKPEGWRSTTEVYSEKLMVLGAKLLEVLS 177          
BLAST of FC920306 vs. ExPASy Swiss-Prot
Match: FL3H_MALDO (Naringenin,2-oxoglutarate 3-dioxygenase OS=Malus domestica PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 9.836e-17
Identity = 54/175 (30.86%), Postives = 92/175 (52.57%), Query Frame = 2
Query:   80 IASLSHSNGTIPAEFVRPEKEQPASATYHGPAPEIPTIDLD--DPVQDR---LVRSIAEASREWGIFQVTNHGIPSDLIGKLQAVGKEFFELPQEEKEVYSRPADAKDVQGYGTKLQKEVEGKKSWVDHLFHRVWPPSSINYRFWPNNPPSYRAVNEEYAKYMREVVDKLFTYLS 589
            + S++H   T+  +FVR E E+P  A Y+  + EIP I L   D V+ R   + + I  A  +WGIFQ+ +HG+ ++LI ++  + +EFF LP EEK  +      K   G+      + E  + W + + +  +P    +Y  WP+ P ++R V ++Y+  +  +  KL   LS
Sbjct:    7 LTSIAHEK-TLQQKFVRDEDERPKVA-YNDFSNEIPIISLAGIDEVEGRRGEICKKIVAACEDWGIFQIVDHGVDAELISEMTGLAREFFALPSEEKLRFDMSGGKKG--GFIVSSHLQGEAVQDWREIVTYFSYPIRHRDYSRWPDKPEAWREVTKKYSDELMGLACKLLGVLS 177          
The following BLAST results are available for this feature:
BLAST of FC920306 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
LDOX_MALDO2.495e-2834.76Leucoanthocyanidin dioxygenase OS=Malus domestica ... [more]
LDOX_PETHY1.238e-2736.05Leucoanthocyanidin dioxygenase OS=Petunia hybrida ... [more]
LDOX_VITVI2.112e-2732.98Leucoanthocyanidin dioxygenase OS=Vitis vinifera P... [more]
LDOX_MAIZE5.203e-2634.20Leucoanthocyanidin dioxygenase OS=Zea mays GN=A2 P... [more]
FL3H_VITVI3.612e-1933.53Naringenin,2-oxoglutarate 3-dioxygenase OS=Vitis v... [more]
FL3H_PETCR1.792e-1834.13Flavanone 3-dioxygenase OS=Petroselinum crispum GN... [more]
NCS1_COPJA1.517e-1731.79S-norcoclaurine synthase 1 OS=Coptis japonica GN=N... [more]
FL3H_DIACA1.517e-1732.60Naringenin,2-oxoglutarate 3-dioxygenase OS=Dianthu... [more]
FNSI_PETCR9.836e-1734.13Flavone synthase OS=Petroselinum crispum GN=FNSI P... [more]
FL3H_MALDO9.836e-1730.86Naringenin,2-oxoglutarate 3-dioxygenase OS=Malus d... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32006F06EF RVDevelop1 Citrus clementina cDNA clone C32006F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920306 ID=FC920306; Name=FC920306; organism=Citrus clementina; type=EST; length=596bp
AGAGAGGGAGAGAAGGAAAAGAAAAGTGGTGGGGTTTTGCTGGAAAATAA
AATTAATGGAGGTGGAGAGGGTCCAAGCCATTGCTTCCTTATCCCATTCA
AATGGCACAATTCCAGCAGAGTTCGTAAGACCCGAAAAAGAACAGCCAGC
AAGCGCAACGTACCACGGCCCCGCTCCTGAAATCCCCACGATCGATCTCG
ACGACCCCGTTCAAGACAGACTCGTACGTTCCATCGCGGAAGCCAGCCGG
GAGTGGGGGATTTTCCAGGTTACAAACCACGGGATACCTAGTGACCTCAT
CGGTAAACTGCAAGCCGTCGGCAAAGAATTTTTTGAGCTCCCTCAGGAAG
AGAAAGAAGTGTATTCTCGTCCGGCTGATGCAAAAGACGTGCAAGGATAC
GGCACAAAGTTACAGAAAGAAGTCGAAGGAAAGAAATCTTGGGTTGATCA
TCTCTTCCACAGGGTTTGGCCTCCGTCTTCTATCAACTACCGCTTTTGGC
CCAACAACCCTCCTTCTTACCGAGCGGTGAATGAGGAGTATGCAAAGTAC
ATGAGGGAGGTGGTGGATAAGTTGTTTACGTATCTTTCGTTGGGAC
back to top