FC920306

Overview
NameFC920306
Unique NameFC920306
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length596
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6036 contig Ccv1_Contig6036:62..657. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920306 vs. ExPASy Swiss-Prot
Match: FL3H_PETHY (Naringenin,2-oxoglutarate 3-dioxygenase (Fragment) OS=Petunia hybrida GN=AN3 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.285e-16
Identity = 54/166 (32.53%), Postives = 87/166 (52.41%), Query Frame = 2
Query:  107 TIPAEFVRPEKEQPASATYHGPAPEIPTIDL---DDPVQDR--LVRSIAEASREWGIFQVTNHGIPSDLIGKLQAVGKEFFELPQEEKEVYSRPADAKDVQGYGTKLQKEVEGKKSWVDHLFHRVWPPSSINYRFWPNNPPSYRAVNEEYAKYMREVVDKLFTYLS 589
            T+   F+R E E+P  A Y+  + EIP I L   DD    R  +   I +A  +WG+FQV +HG+ +++I ++    KEFF LP EEK  +      K      + LQ EV   + W + + +  +P  + +Y  WP+ P  + AV ++Y++ + E+  KL   LS
Sbjct:   17 TLQTSFIRDEDERPKVA-YNQFSNEIPIISLEGIDDETGKRAEICDKIVKACEDWGVFQVVDHGVDAEVISQMTTFAKEFFALPPEEKLRFDMSGGKKGGFIVSSHLQGEV--VQDWREIVTYFSYPTRARDYSRWPDKPEGWIAVTQKYSEKLMELACKLLDVLS 179          
BLAST of FC920306 vs. ExPASy Swiss-Prot
Match: FL3H_MATIN (Naringenin,2-oxoglutarate 3-dioxygenase (Fragment) OS=Matthiola incana GN=FHT PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.738e-16
Identity = 51/163 (31.29%), Postives = 82/163 (50.31%), Query Frame = 2
Query:  116 AEFVRPEKEQPASATYHGPAPEIPTIDLD-----DPVQDRLVRSIAEASREWGIFQVTNHGIPSDLIGKLQAVGKEFFELPQEEKEVYSRPADAKDVQGYGTKLQKEVEGKKSWVDHLFHRVWPPSSINYRFWPNNPPSYRAVNEEYAKYMREVVDKLFTYLS 589
            ++FVR E E+P  A Y+  + EIP I L      D  +  + R I EA   WGIFQV +HG+ + L+  +  + ++FF LP EEK  +      K   G+      + E  + W + + +  +P  + +Y  WP+ P  +  V EEY++ +  +  KL   LS
Sbjct:   16 SKFVRDEDERPKVA-YNEFSDEIPVISLAGIDDVDGKRGEICREIVEACENWGIFQVVDHGVDTSLVADMTRLARDFFALPPEEKLRFDMSGGKKG--GFIVSSHLQGEAVQDWREIVTYFSYPVRNRDYSRWPDKPQGWAKVTEEYSEKLMGLACKLLEVLS 175          
BLAST of FC920306 vs. ExPASy Swiss-Prot
Match: FL3H_CALCH (Naringenin,2-oxoglutarate 3-dioxygenase OS=Callistephus chinensis GN=FHT PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.881e-16
Identity = 50/160 (31.25%), Postives = 82/160 (51.25%), Query Frame = 2
Query:  119 EFVRPEKEQPASATYHGPAPEIPTIDL---DDPVQDRLVRSIAEASREWGIFQVTNHGIPSDLIGKLQAVGKEFFELPQEEKEVYSRPADAKDVQGYGTKLQKEVEGKKSWVDHLFHRVWPPSSINYRFWPNNPPSYRAVNEEYAKYMREVVDKLFTYLS 589
            +FVR E E+P    Y+  + EIP I L   D   +  +   I +A  +WGIFQV +HG+ + L+  +  + ++FF LP +EK  +      K   G+      + E  + W + + +  +P  + +Y  WP+ P  +RAV EEY+K +  +  KL   LS
Sbjct:   18 KFVRDEDERP-KVPYNTFSNEIPVISLAGIDGCRRAEICDEIVKACEDWGIFQVVDHGVDTKLLSDMTGLARDFFHLPTQEKLRFDMTGGKKG--GFIVSSHLQGEAVQDWREIVTYFSYPIKARDYSRWPDKPNEWRAVTEEYSKVLMGLACKLLEVLS 174          
BLAST of FC920306 vs. ExPASy Swiss-Prot
Match: FL3H_ARATH (Naringenin,2-oxoglutarate 3-dioxygenase OS=Arabidopsis thaliana GN=F3H PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 8.326e-16
Identity = 50/163 (30.67%), Postives = 83/163 (50.92%), Query Frame = 2
Query:  116 AEFVRPEKEQPASATYHGPAPEIPTIDLD-----DPVQDRLVRSIAEASREWGIFQVTNHGIPSDLIGKLQAVGKEFFELPQEEKEVYSRPADAKDVQGYGTKLQKEVEGKKSWVDHLFHRVWPPSSINYRFWPNNPPSYRAVNEEYAKYMREVVDKLFTYLS 589
            ++FVR E E+P  A Y+  + EIP I L      D  +  + R I EA   WGIFQV +HG+ ++L+  +  + ++FF LP E+K  +      K   G+      + E  + W + + +  +P  + +Y  WP+ P  +  V EEY++ +  +  KL   LS
Sbjct:   17 SKFVRDEDERPKVA-YNVFSDEIPVISLAGIDDVDGKRGEICRQIVEACENWGIFQVVDHGVDTNLVADMTRLARDFFALPPEDKLRFDMSGGKKG--GFIVSSHLQGEAVQDWREIVTYFSYPVRNRDYSRWPDKPEGWVKVTEEYSERLMSLACKLLEVLS 176          
BLAST of FC920306 vs. ExPASy Swiss-Prot
Match: SRG1_ARATH (Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.049e-15
Identity = 47/165 (28.48%), Postives = 78/165 (47.27%), Query Frame = 2
Query:  107 TIPAEFVRPEKEQPASATYHGPAPEIPTIDL----DDPVQDRLVRSIAEASREWGIFQVTNHGIPSDLIGKLQAVGKEFFELPQEEKEVYSRPADAKDVQGYGTKLQKEVEGKKSWVDHLFHRVWPPSSINYRFWPNNPPSYRAVNEEYAKYMREVVDKLFTYLS 589
            T+P  +VR ++++           EIP ID+         D  V  +  A +EWG FQ+ NHGI S  + K+++  ++FF LP EEK+ + +  D  +++G+G       + K  W D  FH V P        +P  P  +R   E Y+  ++ V   L   ++
Sbjct:   28 TVPPRYVRSDQDKTEVDDDFDVKIEIPIIDMKRLCSSTTMDSEVEKLDFACKEWGFFQLVNHGIDSSFLDKVKSEIQDFFNLPMEEKKKFWQRPD--EIEGFGQAFVVSEDQKLDWADLFFHTVQPVELRKPHLFPKLPLPFRDTLEMYSSEVQSVAKILIAKMA 190          
BLAST of FC920306 vs. ExPASy Swiss-Prot
Match: HY6H_HYONI (Hyoscyamine 6-dioxygenase OS=Hyoscyamus niger GN=H6H PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.793e-14
Identity = 52/164 (31.71%), Postives = 78/164 (47.56%), Query Frame = 2
Query:  128 RPEKEQPASATYHGPAPEIPTIDLDDPVQDRLVRSIAEASREWGIFQVTNHGIPSDLIGKLQAVGKEFFELPQEEKEVYSRPADAKDVQ-GYGTKLQKEVEGKK-------SWVDHLFHRVWPPSSINYRFWPNNPPSYRAVNEEYAKYMREVVDKLFTYLSLG 595
            R EK+ P          ++P IDL       LV+ I +A +++G+FQV NHG P +L+ +   V KEFF LP EEKE +    +A   +     K +  VEG++        W D L H   P        WP  P  YR V  +Y+  +R++  ++  Y+  G
Sbjct:   24 RAEKDVPVGN-------DVPIIDLQQH-HHLLVQQITKACQDFGLFQVINHGFPEELMLETMEVCKEFFALPAEEKEKFKPKGEAAKFELPLEQKAKLYVEGEQLSNEEFLYWKDTLAHGCHPLDQDLVNSWPEKPAKYREVVAKYSVEVRKLTMRMLDYICEG 179          
BLAST of FC920306 vs. ExPASy Swiss-Prot
Match: FL3H_HORVU (Naringenin,2-oxoglutarate 3-dioxygenase OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.793e-14
Identity = 48/163 (29.45%), Postives = 78/163 (47.85%), Query Frame = 2
Query:  107 TIPAEFVRPEKEQPASA--TYHGPAPEIPTIDLDDPVQDRLVRSIAEASREWGIFQVTNHGIPSDLIGKLQAVGKEFFELPQEEKEVYSRPADAKDVQGYGTKLQKEVEGKKSWVDHLFHRVWPPSSINYRFWPNNPPSYRAVNEEYAKYMREVVDKLFTYLS 589
            T+   FVR E E+P  A   +    P I    +D   + ++   +A A  +WGIFQV +HG+ +DLI  +  + +EFF LP E+K  Y      K   G+      + E  + W + + +  +P  + +Y  WP  P  + AV E Y++ +  +   L   LS
Sbjct:   19 TLRPSFVRDEDERPKVAHDRFSDAVPLISLHGIDGARRAQIRDRVAAACEDWGIFQVIDHGVDADLIADMTRLAREFFALPAEDKLRYDMSGGKKG--GFIVSSHLQGEAVQDWREIVTYFSYPVKARDYGRWPEKPAGWCAVVERYSERLMGLSCNLMGVLS 179          
BLAST of FC920306 vs. ExPASy Swiss-Prot
Match: G3OX4_ARATH (Gibberellin 3-beta-dioxygenase 4 OS=Arabidopsis thaliana GN=At1g80330 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.772e-11
Identity = 48/154 (31.17%), Postives = 72/154 (46.75%), Query Frame = 2
Query:  143 QPASATYHGPAPE-IPTIDLDDPVQDRLVRSIAEASREWGIFQVTNHGIPSDLIGKLQAVGKEFFELPQEEKEVYSRPADAKDVQGYGTKLQKEVEGKKSWVDHLFHRVWPPSSINY--RFWPNNPPSYRAVNEEYAKYMREVVDKLFTYLSLG 595
            +P+SA       E IP IDL +P    L   I +AS+ WG FQ+ NHGI   L+  ++++ K  F++P E K      +  K V GYG         KK W +     +   S  N+    WP++   Y  + +EY   M ++  +L  Y  LG
Sbjct:   35 RPSSAVSFDAVEESIPVIDLSNPDVTTL---IGDASKTWGAFQIANHGISQKLLDDIESLSKTLFDMPSERK--LEAASSDKGVSGYGEPRISPFFEKKMWSEGF--TIADDSYRNHFNTLWPHDHTKYCGIIQEYVDEMEKLASRLL-YCILG 180          
BLAST of FC920306 vs. ExPASy Swiss-Prot
Match: IDS2_HORVU (Mugineic-acid 3-dioxygenase OS=Hordeum vulgare GN=IDS2 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.175e-11
Identity = 47/165 (28.48%), Postives = 83/165 (50.30%), Query Frame = 2
Query:  107 TIPAEFVRP-EKEQPASATYHGPAPEIPTIDLDDPVQDRLVRSIAEASREWGIFQVTNHGIPSDLIGKLQAVGKEFFELPQEEK-EVYSRPADAKDVQGYGTKLQKEVEGKKSWVDHLFHRVWPPSSINYRFWPNNPPSYRAVNEEYAKYMREVVDKLFTYLSLG 595
            +IP  F+ P ++  PA+         +P ID+    +D + ++I ++ +E+G  QV NHGI   ++ ++ AV  EFF++P E+K E +S     ++    G+    E  G+K W+D +   ++P  S + + WP+ P   R V   Y    R V  ++   L  G
Sbjct:   14 SIPDSFLLPADRLHPATTDV-----SLPIIDMSRG-RDEVRQAILDSGKEYGFIQVVNHGISEPMLHEMYAVCHEFFDMPAEDKAEFFSEDRSERNKLFCGSAF--ETLGEKYWID-VLELLYPLPSGDTKDWPHKPQMLREVVGNYTSLARGVAMEILRLLCEG 169          
The following BLAST results are available for this feature:
BLAST of FC920306 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
FL3H_PETHY1.285e-1632.53Naringenin,2-oxoglutarate 3-dioxygenase (Fragment)... [more]
FL3H_MATIN3.738e-1631.29Naringenin,2-oxoglutarate 3-dioxygenase (Fragment)... [more]
FL3H_CALCH4.881e-1631.25Naringenin,2-oxoglutarate 3-dioxygenase OS=Callist... [more]
FL3H_ARATH8.326e-1630.67Naringenin,2-oxoglutarate 3-dioxygenase OS=Arabido... [more]
SRG1_ARATH7.049e-1528.48Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 ... [more]
HY6H_HYONI7.793e-1431.71Hyoscyamine 6-dioxygenase OS=Hyoscyamus niger GN=H... [more]
FL3H_HORVU7.793e-1429.45Naringenin,2-oxoglutarate 3-dioxygenase OS=Hordeum... [more]
G3OX4_ARATH2.772e-1131.17Gibberellin 3-beta-dioxygenase 4 OS=Arabidopsis th... [more]
IDS2_HORVU6.175e-1128.48Mugineic-acid 3-dioxygenase OS=Hordeum vulgare GN=... [more]

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Properties
Property NameValue
Genbank descriptionC32006F06EF RVDevelop1 Citrus clementina cDNA clone C32006F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920306 ID=FC920306; Name=FC920306; organism=Citrus clementina; type=EST; length=596bp
AGAGAGGGAGAGAAGGAAAAGAAAAGTGGTGGGGTTTTGCTGGAAAATAA
AATTAATGGAGGTGGAGAGGGTCCAAGCCATTGCTTCCTTATCCCATTCA
AATGGCACAATTCCAGCAGAGTTCGTAAGACCCGAAAAAGAACAGCCAGC
AAGCGCAACGTACCACGGCCCCGCTCCTGAAATCCCCACGATCGATCTCG
ACGACCCCGTTCAAGACAGACTCGTACGTTCCATCGCGGAAGCCAGCCGG
GAGTGGGGGATTTTCCAGGTTACAAACCACGGGATACCTAGTGACCTCAT
CGGTAAACTGCAAGCCGTCGGCAAAGAATTTTTTGAGCTCCCTCAGGAAG
AGAAAGAAGTGTATTCTCGTCCGGCTGATGCAAAAGACGTGCAAGGATAC
GGCACAAAGTTACAGAAAGAAGTCGAAGGAAAGAAATCTTGGGTTGATCA
TCTCTTCCACAGGGTTTGGCCTCCGTCTTCTATCAACTACCGCTTTTGGC
CCAACAACCCTCCTTCTTACCGAGCGGTGAATGAGGAGTATGCAAAGTAC
ATGAGGGAGGTGGTGGATAAGTTGTTTACGTATCTTTCGTTGGGAC
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