FC920307

Overview
NameFC920307
Unique NameFC920307
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length734
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11134 contig Ccv1_Contig11134:67..801. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920307 vs. ExPASy Swiss-Prot
Match: SCP3_ARATH (Serine carboxypeptidase-like 3 OS=Arabidopsis thaliana GN=SCPL3 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.162e-14
Identity = 46/128 (35.94%), Postives = 69/128 (53.91%), Query Frame = 2
Query:  314 VGKLPGQNFNVNFAHYSGYVTVNEESGRALFYWFVEAVEDPDSKPLVLWLNGGPGCSSIAYGEAEEIGPFHIKPDG-----KTLYLNPYSWNQVANILFLDSPLVLVFHIQIHPLILRPMAIKGLRRI 682
            +  LPG    + F   +GY+ V EE    LFY+F+++  +P   PL+LWL+GGPGCSSI+ G   E GP  +K D       +L    YSW + ++++FLD P+   F      L+ +P      +RI
Sbjct:   33 IKSLPGFEGPLPFELETGYIGVGEEEEVQLFYYFIKSERNPKEDPLLLWLSGGPGCSSIS-GLLFENGPLAMKLDVYNGTLPSLVSTTYSWTKASSMIFLDQPVGAGFSYSRTQLLNKPSDSGEAKRI 159          
BLAST of FC920307 vs. ExPASy Swiss-Prot
Match: SPCA_NANOT (Carboxypeptidase S1 homolog A OS=Nannizzia otae (strain CBS 113480) GN=SCPA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.150e-13
Identity = 36/77 (46.75%), Postives = 47/77 (61.04%), Query Frame = 2
Query:  377 VNEESGRALFYWFVEAVEDPDSKPLVLWLNGGPGCSSIAYGEAEEIGPFHIKPDGKTLYLNPYSWNQVANILFLDSP 607
            VN+      F+WF EA EDP + PL +WLNGGPG SS+  G  +E GP  +  D  +   NPYSWN   N+L++D P
Sbjct:   74 VNQNYSINTFFWFFEAREDPKNAPLSIWLNGGPGSSSM-IGLFQENGPCMVNNDSNSTTNNPYSWNNKVNMLYIDQP 149          
BLAST of FC920307 vs. ExPASy Swiss-Prot
Match: SCPB_TRIRU (Carboxypeptidase S1 homolog B OS=Trichophyton rubrum GN=SCPB PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.150e-13
Identity = 32/69 (46.38%), Postives = 47/69 (68.12%), Query Frame = 2
Query:  404 FYWFVEAVEDPDSKPLVLWLNGGPGCSSIAYGEAEEIGPFHIKPDGKTLYLNPYSWNQVANILFLDSPL 610
            F+WF EA +DP++ PL +W+NGGPG SS+ +G   E GP  +  D  +  LNP+SWN   N+L++D P+
Sbjct:   85 FFWFFEARKDPENAPLGIWMNGGPGSSSM-FGMMTENGPCFVNADSNSTRLNPHSWNNEVNMLYIDQPV 152          
BLAST of FC920307 vs. ExPASy Swiss-Prot
Match: SCPL2_DICDI (Serine carboxypeptidase S10 family member 2 OS=Dictyostelium discoideum GN=DDB_G0280105 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.962e-13
Identity = 43/104 (41.35%), Postives = 58/104 (55.77%), Query Frame = 2
Query:  314 VGKLPGQNFNVNFAHYSGYVTVNEESGRALFYWFV---EAVEDPDSKPLVLWLNGGPGCSSIAYGEAEEIGPFHIKPDGKT---LYLNPYSWNQVANILFLDSP 607
            V  LPG +  +    +SG +T NE S   LF+WF    E V +P   PL++WLNGGPGCSS+      E GP     D       Y+NP+SW+  AN+L++D P
Sbjct:   74 VTDLPGLDNGI-LTSFSGLLTTNETSDGNLFFWFFPANETVINPMDAPLLVWLNGGPGCSSMD-SVFIETGPLRFIGDSDNSDKFYINPWSWHNSANMLYIDQP 175          
BLAST of FC920307 vs. ExPASy Swiss-Prot
Match: SCP6_ARATH (Serine carboxypeptidase-like 6 OS=Arabidopsis thaliana GN=SCPL6 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.562e-13
Identity = 46/128 (35.94%), Postives = 67/128 (52.34%), Query Frame = 2
Query:  314 VGKLPGQNFNVNFAHYSGYVTVNEESGRALFYWFVEAVEDPDSKPLVLWLNGGPGCSSIAYGEAEEIGPFHIKPDG-----KTLYLNPYSWNQVANILFLDSPLVLVFHIQIHPLILRPMAIKGLRRI 682
            V  LPG    + F   +GY+ V EE    LFY+F+++  +P   PL+LWL GGPGCS+I+ G   E GP  +K D       +L    YSW + ++++FLD P+   F      L  +P      +RI
Sbjct:   33 VKSLPGFEGPLPFELETGYIGVGEEEEVQLFYYFIKSERNPKEDPLLLWLTGGPGCSAIS-GLLYENGPLTMKLDVYNGTLPSLVSTTYSWTKNSSMIFLDQPVGTGFSYSRTELFNKPSDTGEAKRI 159          
BLAST of FC920307 vs. ExPASy Swiss-Prot
Match: SCP49_ARATH (Serine carboxypeptidase-like 49 OS=Arabidopsis thaliana GN=SCPL49 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 2.768e-13
Identity = 35/88 (39.77%), Postives = 54/88 (61.36%), Query Frame = 2
Query:  347 NFAHYSGYVTVNEESGRALFYWFVEAVEDPDSKPLVLWLNGGPGCSSIAYGEAEEIGPFHIKPDGKTLYLNPYSWNQVANILFLDSPL 610
            +  H++GY  + +  G ++FY+F E+    D+ P+V+WL GGPGCSS       E GPF I     +L  N Y W+QV+N+L++D P+
Sbjct:   96 DLGHHAGYYKLPKSRGASMFYFFFESRNKKDA-PVVIWLTGGPGCSS-ELAVFYENGPFKI-TSNMSLAWNEYGWDQVSNLLYVDQPV 180          

HSP 2 Score: 25.409 bits (54), Expect = 2.768e-13
Identity = 10/15 (66.67%), Postives = 11/15 (73.33%), Query Frame = 1
Query:  604 PVGVGFSYSNTSSDI 648
            PVG GFSY+   SDI
Sbjct:  179 PVGTGFSYTTDKSDI 193          
BLAST of FC920307 vs. ExPASy Swiss-Prot
Match: SCP4_ARATH (Serine carboxypeptidase-like 4 OS=Arabidopsis thaliana GN=SCPL4 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.370e-13
Identity = 44/125 (35.20%), Postives = 66/125 (52.80%), Query Frame = 2
Query:  323 LPGQNFNVNFAHYSGYVTVNEESGRALFYWFVEAVEDPDSKPLVLWLNGGPGCSSIAYGEAEEIGPFHIKPDG-----KTLYLNPYSWNQVANILFLDSPLVLVFHIQIHPLILRPMAIKGLRRI 682
            LPG    + F   +GY+ V EE    LFY+F+++  +P   PL+LWL GGPGCS+I+ G   + GP  +K D       +L    YSW + ++++FLD P+   F      L  +P      +RI
Sbjct:   36 LPGFEGPLPFELETGYIGVGEEEEVQLFYYFIKSERNPKEDPLLLWLTGGPGCSAIS-GLLYQNGPLAMKLDVYNGTLPSLVSTTYSWTKTSSMIFLDQPVGTGFSYSRTQLFNKPSDTGEAKRI 159          
BLAST of FC920307 vs. ExPASy Swiss-Prot
Match: KEX1_SCHPO (Carboxypeptidase kex1 OS=Schizosaccharomyces pombe GN=kex1 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.370e-13
Identity = 39/116 (33.62%), Postives = 63/116 (54.31%), Query Frame = 2
Query:  263 LGSAFSTDPVAQQKLDRVGKLPGQNFNVNFAHYSGYVTVNEESGRALFYWFVEAVEDPDSKPLVLWLNGGPGCSSIAYGEAEEIGPFHIKPDGKTLYLNPYSWNQVANILFLDSPL 610
            +G+  +   + +Q L  V   P +  +     ++G++   ++    LF+W  E+V+       +LWLNGGPGCSS   G   E+GPF +  D  T  LNP  W+++ N+LF+D PL
Sbjct:   16 IGNTLADSRIHEQYL--VKAFPNEPVDYEGRMHAGHLNQTDQLDGDLFFWMFESVKPEYEHRSILWLNGGPGCSS-EDGSLMEVGPFRL-DDNNTFQLNPGRWDELGNLLFVDQPL 127          
BLAST of FC920307 vs. ExPASy Swiss-Prot
Match: CPVL_HUMAN (Probable serine carboxypeptidase CPVL OS=Homo sapiens GN=CPVL PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.025e-12
Identity = 38/104 (36.54%), Postives = 59/104 (56.73%), Query Frame = 2
Query:  299 QKLDRVGKLPGQNFNVNFAHYSGYVTVNEESGRALFYWFVEAVEDPDSKPLVLWLNGGPGCSSIAYGEAEEIGPFHIKPDGKTLYLNPYSWNQVANILFLDSPL 610
            ++L  VG  PG    +N   Y+G++TVN+     LF+WF  A   P+  P+VLWL GGPG SS+ +G   E GP+ +     TL    + W    ++L++D+P+
Sbjct:   58 RELSLVGPFPG----LNMKSYAGFLTVNKTYNSNLFFWFFPAQIQPEDAPVVLWLQGGPGGSSM-FGLFVEHGPY-VVTSNMTLRDRDFPWTTTLSMLYIDNPV 155          

HSP 2 Score: 21.9422 bits (45), Expect = 1.025e-12
Identity = 8/20 (40.00%), Postives = 12/20 (60.00%), Query Frame = 1
Query:  604 PVGVGFSYSNTSSDITTNGD 663
            PVG GFS+++ +     N D
Sbjct:  154 PVGTGFSFTDDTHGYAVNED 173          
BLAST of FC920307 vs. ExPASy Swiss-Prot
Match: SPCA_TRIEQ (Carboxypeptidase S1 homolog A OS=Trichophyton equinum GN=SCPA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.271e-12
Identity = 34/68 (50.00%), Postives = 44/68 (64.71%), Query Frame = 2
Query:  404 FYWFVEAVEDPDSKPLVLWLNGGPGCSSIAYGEAEEIGPFHIKPDGKTLYLNPYSWNQVANILFLDSP 607
            F+WF EA EDP + PL +WLNGGPG SS+  G  +E GP  I  D K+   N +SWN   N+L++D P
Sbjct:   83 FFWFFEAREDPKNAPLSIWLNGGPGSSSM-IGLFQENGPCWINDDSKSTTNNTFSWNNKVNMLYIDQP 149          
The following BLAST results are available for this feature:
BLAST of FC920307 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
SCP3_ARATH5.162e-1435.94Serine carboxypeptidase-like 3 OS=Arabidopsis thal... [more]
SPCA_NANOT1.150e-1346.75Carboxypeptidase S1 homolog A OS=Nannizzia otae (s... [more]
SCPB_TRIRU1.150e-1346.38Carboxypeptidase S1 homolog B OS=Trichophyton rubr... [more]
SCPL2_DICDI1.962e-1341.35Serine carboxypeptidase S10 family member 2 OS=Dic... [more]
SCP6_ARATH2.562e-1335.94Serine carboxypeptidase-like 6 OS=Arabidopsis thal... [more]
SCP49_ARATH2.768e-1339.77Serine carboxypeptidase-like 49 OS=Arabidopsis tha... [more]
SCP4_ARATH4.370e-1335.20Serine carboxypeptidase-like 4 OS=Arabidopsis thal... [more]
KEX1_SCHPO4.370e-1333.62Carboxypeptidase kex1 OS=Schizosaccharomyces pombe... [more]
CPVL_HUMAN1.025e-1236.54Probable serine carboxypeptidase CPVL OS=Homo sapi... [more]
SPCA_TRIEQ1.271e-1250.00Carboxypeptidase S1 homolog A OS=Trichophyton equi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32006F07EF RVDevelop1 Citrus clementina cDNA clone C32006F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920307 ID=FC920307; Name=FC920307; organism=Citrus clementina; type=EST; length=734bp
GGACATCATTCAAATCATTCATCGAACCCACTATTCTGGACAGAGAAATC
AAAAGGGCTTAAGTTCTGTTCAGCAGATAAACTGAACAAAGAAAAAAAAA
AAATTCCTCAGAACACTATCATTGGCTCCAACGTTTTTGCTTGATTATGT
CTTCTTTATAAGTCGCAGTACCCCAGTACACTAAACCATATAAAAAATGG
CTTATAATCCAAAAGGGGCTTCCTTTCTTGTTCAAATCTTGTTCATTTGC
ATAATTTTTTATCTGGGCAGTGCCTTTTCAACAGACCCAGTTGCCCAGCA
AAAACTTGACAGAGTTGGGAAGCTACCTGGGCAAAATTTCAATGTCAACT
TTGCCCATTACTCTGGTTATGTCACAGTCAACGAAGAATCCGGGAGGGCT
CTCTTTTATTGGTTCGTTGAAGCTGTTGAAGATCCTGATTCCAAGCCTCT
TGTGCTTTGGCTCAATGGAGGGCCTGGGTGTTCATCCATTGCTTATGGAG
AGGCAGAGGAAATAGGTCCTTTTCACATCAAGCCAGATGGGAAGACCTTA
TACTTGAATCCTTACTCTTGGAATCAAGTTGCCAACATTCTGTTTCTTGA
TTCCCCGTTGGTGTTGGTTTTTCATATTCAAATACATCCTCTGATATTAC
GACCAATGGCGATAAAAGGACTGCGGAGGATTCCCTAAAATTTTACTAAA
GTGTTAGAACGGTTTCACATTTTAAGGAGGGATT
back to top