FC920307

Overview
NameFC920307
Unique NameFC920307
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length734
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11134 contig Ccv1_Contig11134:67..801. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920307 vs. ExPASy Swiss-Prot
Match: SCPA_TRITO (Carboxypeptidase S1 homolog A OS=Trichophyton tonsurans GN=SCPA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.271e-12
Identity = 34/68 (50.00%), Postives = 44/68 (64.71%), Query Frame = 2
Query:  404 FYWFVEAVEDPDSKPLVLWLNGGPGCSSIAYGEAEEIGPFHIKPDGKTLYLNPYSWNQVANILFLDSP 607
            F+WF EA EDP + PL +WLNGGPG SS+  G  +E GP  I  D K+   N +SWN   N+L++D P
Sbjct:   83 FFWFFEAREDPKNAPLSIWLNGGPGSSSM-IGLFQENGPCWINDDSKSTTNNTFSWNNKVNMLYIDQP 149          
BLAST of FC920307 vs. ExPASy Swiss-Prot
Match: SPCA_TRIRU (Carboxypeptidase S1 homolog A OS=Trichophyton rubrum GN=SCPA PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.661e-12
Identity = 33/68 (48.53%), Postives = 44/68 (64.71%), Query Frame = 2
Query:  404 FYWFVEAVEDPDSKPLVLWLNGGPGCSSIAYGEAEEIGPFHIKPDGKTLYLNPYSWNQVANILFLDSP 607
            F+WF EA EDP + PL +WLNGGPG SS+  G  +E GP  +  D K+   N +SWN   N+L++D P
Sbjct:   83 FFWFFEAREDPKNAPLSIWLNGGPGSSSM-IGLFQENGPCWVNEDSKSTTNNSFSWNNKVNMLYIDQP 149          
BLAST of FC920307 vs. ExPASy Swiss-Prot
Match: CPVL_MOUSE (Probable serine carboxypeptidase CPVL OS=Mus musculus GN=Cpvl PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.832e-12
Identity = 40/113 (35.40%), Postives = 58/113 (51.33%), Query Frame = 2
Query:  299 QKLDRVGKLPGQNFNVNFAHYSGYVTVNEESGRALFYWFVEAVEDPDSKPLVLWLNGGPGCSSIAYGEAEEIGPFHIKPDGKTLYLNPYSWNQVANILFLDSPLVLVFHIQIH 637
            Q+   V   PG N       Y+GY+TVN+     LF+WF  A   P+  P+VLWL GGPG SS+ +G   E GP+ I     T+    + W    ++L++D+P+   F    H
Sbjct:   60 QRKSMVSPFPGMNDK----SYAGYITVNQTYNSNLFFWFFPARMQPEDAPVVLWLQGGPGGSSM-FGLFVEHGPY-IITSNMTVVARDFPWTFTLSMLYIDNPVGTGFSFTDH 166          
BLAST of FC920307 vs. ExPASy Swiss-Prot
Match: SCP17_ARATH (Serine carboxypeptidase-like 17 OS=Arabidopsis thaliana GN=SCPL17 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.310e-12
Identity = 40/112 (35.71%), Postives = 60/112 (53.57%), Query Frame = 2
Query:  323 LPGQNFNVNFAHYSGYVTVNEESGRALFYWFVEAVEDPDSKPLVLWLNGGPGCSSIAYGEAEEIGPFHIKPDG-----KTLYLNPYSWNQVANILFLDSPLVLVFHIQIHPL 643
            LPG    + F   +GY+ V E     +FY+F+++  +P+  PL+LWL+GGP CSS       E GP   K +       +L    Y+W +VA+IL+LD P+   F    +PL
Sbjct:   33 LPGFQGPLPFELETGYIGVGEAEKDQMFYYFIKSESNPEKDPLLLWLSGGPFCSSFT-ALIYENGPIAFKAEEYNGSIPSLVSTTYAWTKVASILYLDQPVGTGFSYSRNPL 143          
BLAST of FC920307 vs. ExPASy Swiss-Prot
Match: CPVL_PONAB (Probable serine carboxypeptidase CPVL OS=Pongo abelii GN=CPVL PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.396e-11
Identity = 33/89 (37.08%), Postives = 52/89 (58.43%), Query Frame = 2
Query:  344 VNFAHYSGYVTVNEESGRALFYWFVEAVEDPDSKPLVLWLNGGPGCSSIAYGEAEEIGPFHIKPDGKTLYLNPYSWNQVANILFLDSPL 610
            +N   Y+G++TVN+     LF+WF  A   P+  P+VLWL GGPG SS+ +G   E GP+ +     TL    + W    ++L++D+P+
Sbjct:   69 LNMRSYAGFLTVNKTYNSNLFFWFFPAQIQPEDAPVVLWLQGGPGFSSM-FGLFVEHGPY-VVTSNMTLRDRDFPWTTTLSMLYIDNPV 155          

HSP 2 Score: 21.9422 bits (45), Expect = 1.396e-11
Identity = 8/20 (40.00%), Postives = 12/20 (60.00%), Query Frame = 1
Query:  604 PVGVGFSYSNTSSDITTNGD 663
            PVG GFS+++ +     N D
Sbjct:  154 PVGTGFSFTDDTHGYAVNED 173          
BLAST of FC920307 vs. ExPASy Swiss-Prot
Match: PEPS_ASPSA (Carboxypeptidase cpdS OS=Aspergillus saitoi GN=cpdS PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.836e-11
Identity = 34/95 (35.79%), Postives = 53/95 (55.79%), Query Frame = 2
Query:  323 LPGQNFNVNFAHYSGYVTVNEESGRALFYWFVEAVEDPDSKPLVLWLNGGPGCSSIAYGEAEEIGPFHIKPDGKTLYLNPYSWNQVANILFLDSP 607
            +P  +F+V  + Y+G +        +LF+WF  +     S  + +WLNGGPGCSS+  G  +E GPF  +P       NPYSW  + N++++D P
Sbjct:   67 IPEVDFDVGES-YAGLLPNTPTGNSSLFFWFFPSQNPDASDEITIWLNGGPGCSSLD-GLLQENGPFLWQPGTYKPVPNPYSWTNLTNVVYIDQP 159          
BLAST of FC920307 vs. ExPASy Swiss-Prot
Match: SCP48_ARATH (Serine carboxypeptidase-like 48 OS=Arabidopsis thaliana GN=SCPL48 PE=2 SV=2)

HSP 1 Score: 62.003 bits (149), Expect = 6.664e-11
Identity = 29/88 (32.95%), Postives = 52/88 (59.09%), Query Frame = 2
Query:  347 NFAHYSGYVTVNEESGRALFYWFVEAVEDPDSKPLVLWLNGGPGCSSIAYGEAEEIGPFHIKPDGKTLYLNPYSWNQVANILFLDSPL 610
            +F H++GY  +       +FY+F E+  +  + P+V+WL GGPGCSS       E GPF +  +  +L  N + W++ +N++++D P+
Sbjct:   98 DFGHHAGYYKLPNSKAARMFYFFFESRTNK-ADPVVIWLTGGPGCSS-ELALFYENGPFTVS-NNSSLSWNEFGWDKASNLIYVDQPV 182          

HSP 2 Score: 25.7942 bits (55), Expect = 6.664e-11
Identity = 10/20 (50.00%), Postives = 14/20 (70.00%), Query Frame = 1
Query:  604 PVGVGFSYSNTSSDITTNGD 663
            PVG GFSY++  SD+  + D
Sbjct:  181 PVGTGFSYTSDQSDLRHDED 200          
BLAST of FC920307 vs. ExPASy Swiss-Prot
Match: CBP3_HORVU (Serine carboxypeptidase 3 OS=Hordeum vulgare GN=CBP3 PE=1 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 8.651e-11
Identity = 39/109 (35.78%), Postives = 58/109 (53.21%), Query Frame = 2
Query:  284 DPVAQQKLDRVGKLPGQNFNV-NFAHYSGYVTVNEESGRALFYWFVEAVEDPDSKPLVLWLNGGPGCSSIAYGEAEEIGPFHIKPDGKTLYLNPYSWNQVANILFLDSP 607
            D    Q L+R   LPG    V +  H++GY  +       +FY+F E+       P+V+WL GGPGCSS       E GPF I  +  +L  N + W++++NI+F+D P
Sbjct:   68 DVAPGQLLERRVTLPGLPEGVADLGHHAGYYRLPNTHDARMFYFFFES-RGKKEDPVVIWLTGGPGCSS-ELAVFYENGPFTI-ANNMSLVWNKFGWDKISNIIFVDQP 173          

HSP 2 Score: 21.9422 bits (45), Expect = 8.651e-11
Identity = 8/14 (57.14%), Postives = 9/14 (64.29%), Query Frame = 1
Query:  604 PVGVGFSYSNTSSD 645
            P G GFSYS+   D
Sbjct:  173 PTGTGFSYSSDDRD 186          
The following BLAST results are available for this feature:
BLAST of FC920307 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
SCPA_TRITO1.271e-1250.00Carboxypeptidase S1 homolog A OS=Trichophyton tons... [more]
SPCA_TRIRU1.661e-1248.53Carboxypeptidase S1 homolog A OS=Trichophyton rubr... [more]
CPVL_MOUSE4.832e-1235.40Probable serine carboxypeptidase CPVL OS=Mus muscu... [more]
SCP17_ARATH6.310e-1235.71Serine carboxypeptidase-like 17 OS=Arabidopsis tha... [more]
CPVL_PONAB1.396e-1137.08Probable serine carboxypeptidase CPVL OS=Pongo abe... [more]
PEPS_ASPSA1.836e-1135.79Carboxypeptidase cpdS OS=Aspergillus saitoi GN=cpd... [more]
SCP48_ARATH6.664e-1132.95Serine carboxypeptidase-like 48 OS=Arabidopsis tha... [more]
CBP3_HORVU8.651e-1135.78Serine carboxypeptidase 3 OS=Hordeum vulgare GN=CB... [more]

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Properties
Property NameValue
Genbank descriptionC32006F07EF RVDevelop1 Citrus clementina cDNA clone C32006F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920307 ID=FC920307; Name=FC920307; organism=Citrus clementina; type=EST; length=734bp
GGACATCATTCAAATCATTCATCGAACCCACTATTCTGGACAGAGAAATC
AAAAGGGCTTAAGTTCTGTTCAGCAGATAAACTGAACAAAGAAAAAAAAA
AAATTCCTCAGAACACTATCATTGGCTCCAACGTTTTTGCTTGATTATGT
CTTCTTTATAAGTCGCAGTACCCCAGTACACTAAACCATATAAAAAATGG
CTTATAATCCAAAAGGGGCTTCCTTTCTTGTTCAAATCTTGTTCATTTGC
ATAATTTTTTATCTGGGCAGTGCCTTTTCAACAGACCCAGTTGCCCAGCA
AAAACTTGACAGAGTTGGGAAGCTACCTGGGCAAAATTTCAATGTCAACT
TTGCCCATTACTCTGGTTATGTCACAGTCAACGAAGAATCCGGGAGGGCT
CTCTTTTATTGGTTCGTTGAAGCTGTTGAAGATCCTGATTCCAAGCCTCT
TGTGCTTTGGCTCAATGGAGGGCCTGGGTGTTCATCCATTGCTTATGGAG
AGGCAGAGGAAATAGGTCCTTTTCACATCAAGCCAGATGGGAAGACCTTA
TACTTGAATCCTTACTCTTGGAATCAAGTTGCCAACATTCTGTTTCTTGA
TTCCCCGTTGGTGTTGGTTTTTCATATTCAAATACATCCTCTGATATTAC
GACCAATGGCGATAAAAGGACTGCGGAGGATTCCCTAAAATTTTACTAAA
GTGTTAGAACGGTTTCACATTTTAAGGAGGGATT
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