FC920308

Overview
NameFC920308
Unique NameFC920308
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length427
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7687 contig Ccv1_Contig7687:1..427. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920308 vs. ExPASy Swiss-Prot
Match: KPYM_RABIT (Pyruvate kinase isozymes M1/M2 OS=Oryctolagus cuniculus GN=PKM2 PE=1 SV=4)

HSP 1 Score: 100.908 bits (250), Expect = 2.197e-21
Identity = 63/148 (42.57%), Postives = 83/148 (56.08%), Query Frame = 2
Query:    2 SHEYHQETLNNLRTA---MVNTGIL---CAVMLDTKGPEIRTGFLKDG--KPIQLKQGQEITISTD--YTIKGDENMICMSYKKLAVDVQPGSVILCSDGTISFTVLECNVKAGLVKCRCENSAMLGERKNVNLPGVIVDLPTLTEKD 415
            +HEYH ET+ N+RTA     +  IL    AV LDTKGPEIRTG +K      ++LK+G  + I+ D  Y  K DEN++ + YK +   V  GS +   DG IS  V +       +    EN   LG +K VNLPG  VDLP ++EKD
Sbjct:   80 THEYHAETIKNVRTATESFASDPILYRPVAVALDTKGPEIRTGLIKGSGTAEVELKKGATLKITLDNAYMEKCDENILWLDYKNICKVVDVGSKVYVDDGLISLQVKQKG--PDFLVTEVENGGFLGSKKGVNLPGAAVDLPAVSEKD 225          
BLAST of FC920308 vs. ExPASy Swiss-Prot
Match: KPYM_FELCA (Pyruvate kinase isozyme M1 OS=Felis catus GN=PKM2 PE=1 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 2.197e-21
Identity = 62/148 (41.89%), Postives = 82/148 (55.41%), Query Frame = 2
Query:    2 SHEYHQETLNNLRTAMVNTGI------LCAVMLDTKGPEIRTGFLKDG--KPIQLKQGQEITISTD--YTIKGDENMICMSYKKLAVDVQPGSVILCSDGTISFTVLECNVKAGLVKCRCENSAMLGERKNVNLPGVIVDLPTLTEKD 415
            +HEYH ET+ N+R A  +           AV LDTKGPEIRTG +K      ++LK+G  + I+ D  Y  K DEN++ + YK +   V+ GS +   DG IS  V E    A  +    EN   LG +K VNLPG  VDLP ++EKD
Sbjct:   80 THEYHAETIKNVRAATESFASDPIRYRPVAVALDTKGPEIRTGLIKGSGTAEVELKKGATLKITLDNAYMEKCDENVLWLDYKNICKVVEVGSKVYVDDGLISLLVKEKG--ADFLVTEVENGGSLGSKKGVNLPGAAVDLPAVSEKD 225          
BLAST of FC920308 vs. ExPASy Swiss-Prot
Match: KPYK_STAHJ (Pyruvate kinase OS=Staphylococcus haemolyticus (strain JCSC1435) GN=pyk PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.869e-21
Identity = 56/138 (40.58%), Postives = 81/138 (58.70%), Query Frame = 2
Query:    2 SHEYHQETLNNLRTAMVNTGILCAVMLDTKGPEIRTGFLKDGKPIQLKQGQEITISTDYTIKGDENMICMSYKKLAVDVQPGSVILCSDGTISFTVLECNVKAGLVKCRCENSAMLGERKNVNLPGVIVDLPTLTEKD 415
            SHE H+  ++ +R      G    ++LDTKGPEIRT  +KDG  I L++G+E+ +S    ++G      ++Y+ L  DVQ GS IL  DG +   V + +   G VKC   N+  L  +K VNLPGV V+LP +T+KD
Sbjct:   39 SHEEHKARIDTIRKVADRLGKTIGILLDTKGPEIRTHDMKDGL-IMLEKGKEVIVSMSQ-VEGTPEKFSVTYEDLINDVQVGSYILLDDGLVELQVKDIDKTKGEVKCDILNTGELKNKKGVNLPGVKVNLPGITDKD 174          
BLAST of FC920308 vs. ExPASy Swiss-Prot
Match: KPYK_LEIME (Pyruvate kinase OS=Leishmania mexicana GN=PYK PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.869e-21
Identity = 55/141 (39.01%), Postives = 83/141 (58.87%), Query Frame = 2
Query:    2 SHEYHQETLNNLRTAMVNTGILCAVMLDTKGPEIRTGFLKDGKPIQLKQGQEITISTD--YTIKGDENMICMSYKKLAVDVQPGSVILCSDGTISFTVLECNVKAGLVKCRCENSAMLGERKNVNLPGVIVDLPTLTEKDR 418
            SHEYHQ T+NN+R A    G+  A+ LDTKGPEIRTG    G  + +++G    ++TD  +  KG ++   + Y+ L+  V+PG+ I   DG +   V + +     ++C   NS  + +R+ VNLPG  VDLP ++ KDR
Sbjct:   57 SHEYHQTTINNVRQAAAELGVNIAIALDTKGPEIRTGQFVGGDAV-MERGATCYVTTDPAFADKGTKDKFYIDYQNLSKVVRPGNYIYIDDGILILQV-QSHEDEQTLECTVTNSHTISDRRGVNLPGCDVDLPAVSAKDR 195          
BLAST of FC920308 vs. ExPASy Swiss-Prot
Match: KPYK_STAAW (Pyruvate kinase OS=Staphylococcus aureus (strain MW2) GN=pyk PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.747e-21
Identity = 58/138 (42.03%), Postives = 81/138 (58.70%), Query Frame = 2
Query:    2 SHEYHQETLNNLRTAMVNTGILCAVMLDTKGPEIRTGFLKDGKPIQLKQGQEITISTDYTIKGDENMICMSYKKLAVDVQPGSVILCSDGTISFTVLECNVKAGLVKCRCENSAMLGERKNVNLPGVIVDLPTLTEKD 415
            SHE H+  ++ +R        + A++LDTKGPEIRT  +KDG  I+L++G E+ +S +  ++G      ++Y+ L  DVQ GS IL  DG I   V + +     VKC   NS  L  +K VNLPGV V LP +TEKD
Sbjct:   39 SHEEHKGRIDTIRKVAKRLDKIVAILLDTKGPEIRTHNMKDGI-IELERGNEVIVSMN-EVEGTPEKFSVTYENLINDVQVGSYILLDDGLIELQVKDIDHAKKEVKCDILNSGELKNKKGVNLPGVRVSLPGITEKD 174          
BLAST of FC920308 vs. ExPASy Swiss-Prot
Match: KPYK_STAAS (Pyruvate kinase OS=Staphylococcus aureus (strain MSSA476) GN=pyk PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.747e-21
Identity = 58/138 (42.03%), Postives = 81/138 (58.70%), Query Frame = 2
Query:    2 SHEYHQETLNNLRTAMVNTGILCAVMLDTKGPEIRTGFLKDGKPIQLKQGQEITISTDYTIKGDENMICMSYKKLAVDVQPGSVILCSDGTISFTVLECNVKAGLVKCRCENSAMLGERKNVNLPGVIVDLPTLTEKD 415
            SHE H+  ++ +R        + A++LDTKGPEIRT  +KDG  I+L++G E+ +S +  ++G      ++Y+ L  DVQ GS IL  DG I   V + +     VKC   NS  L  +K VNLPGV V LP +TEKD
Sbjct:   39 SHEEHKGRIDTIRKVAKRLDKIVAILLDTKGPEIRTHNMKDGI-IELERGNEVIVSMN-EVEGTPEKFSVTYENLINDVQVGSYILLDDGLIELQVKDIDHAKKEVKCDILNSGELKNKKGVNLPGVRVSLPGITEKD 174          
BLAST of FC920308 vs. ExPASy Swiss-Prot
Match: KPYK_STAAR (Pyruvate kinase OS=Staphylococcus aureus (strain MRSA252) GN=pyk PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.747e-21
Identity = 58/138 (42.03%), Postives = 81/138 (58.70%), Query Frame = 2
Query:    2 SHEYHQETLNNLRTAMVNTGILCAVMLDTKGPEIRTGFLKDGKPIQLKQGQEITISTDYTIKGDENMICMSYKKLAVDVQPGSVILCSDGTISFTVLECNVKAGLVKCRCENSAMLGERKNVNLPGVIVDLPTLTEKD 415
            SHE H+  ++ +R        + A++LDTKGPEIRT  +KDG  I+L++G E+ +S +  ++G      ++Y+ L  DVQ GS IL  DG I   V + +     VKC   NS  L  +K VNLPGV V LP +TEKD
Sbjct:   39 SHEEHKGRIDTIRKVAKRLDKIVAILLDTKGPEIRTHNMKDGI-IELERGNEVIVSMN-EVEGTPEKFSVTYENLINDVQVGSYILLDDGLIELQVKDIDHAKKEVKCDILNSGELKNKKGVNLPGVRVSLPGITEKD 174          
BLAST of FC920308 vs. ExPASy Swiss-Prot
Match: KPYK_STAAN (Pyruvate kinase OS=Staphylococcus aureus (strain N315) GN=pyk PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.747e-21
Identity = 58/138 (42.03%), Postives = 81/138 (58.70%), Query Frame = 2
Query:    2 SHEYHQETLNNLRTAMVNTGILCAVMLDTKGPEIRTGFLKDGKPIQLKQGQEITISTDYTIKGDENMICMSYKKLAVDVQPGSVILCSDGTISFTVLECNVKAGLVKCRCENSAMLGERKNVNLPGVIVDLPTLTEKD 415
            SHE H+  ++ +R        + A++LDTKGPEIRT  +KDG  I+L++G E+ +S +  ++G      ++Y+ L  DVQ GS IL  DG I   V + +     VKC   NS  L  +K VNLPGV V LP +TEKD
Sbjct:   39 SHEEHKGRIDTIRKVAKRLDKIVAILLDTKGPEIRTHNMKDGI-IELERGNEVIVSMN-EVEGTPEKFSVTYENLINDVQVGSYILLDDGLIELQVKDIDHAKKEVKCDILNSGELKNKKGVNLPGVRVSLPGITEKD 174          
BLAST of FC920308 vs. ExPASy Swiss-Prot
Match: KPYK_STAAM (Pyruvate kinase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=pyk PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.747e-21
Identity = 58/138 (42.03%), Postives = 81/138 (58.70%), Query Frame = 2
Query:    2 SHEYHQETLNNLRTAMVNTGILCAVMLDTKGPEIRTGFLKDGKPIQLKQGQEITISTDYTIKGDENMICMSYKKLAVDVQPGSVILCSDGTISFTVLECNVKAGLVKCRCENSAMLGERKNVNLPGVIVDLPTLTEKD 415
            SHE H+  ++ +R        + A++LDTKGPEIRT  +KDG  I+L++G E+ +S +  ++G      ++Y+ L  DVQ GS IL  DG I   V + +     VKC   NS  L  +K VNLPGV V LP +TEKD
Sbjct:   39 SHEEHKGRIDTIRKVAKRLDKIVAILLDTKGPEIRTHNMKDGI-IELERGNEVIVSMN-EVEGTPEKFSVTYENLINDVQVGSYILLDDGLIELQVKDIDHAKKEVKCDILNSGELKNKKGVNLPGVRVSLPGITEKD 174          
BLAST of FC920308 vs. ExPASy Swiss-Prot
Match: KPYK_STAAC (Pyruvate kinase OS=Staphylococcus aureus (strain COL) GN=pyk PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.747e-21
Identity = 58/138 (42.03%), Postives = 81/138 (58.70%), Query Frame = 2
Query:    2 SHEYHQETLNNLRTAMVNTGILCAVMLDTKGPEIRTGFLKDGKPIQLKQGQEITISTDYTIKGDENMICMSYKKLAVDVQPGSVILCSDGTISFTVLECNVKAGLVKCRCENSAMLGERKNVNLPGVIVDLPTLTEKD 415
            SHE H+  ++ +R        + A++LDTKGPEIRT  +KDG  I+L++G E+ +S +  ++G      ++Y+ L  DVQ GS IL  DG I   V + +     VKC   NS  L  +K VNLPGV V LP +TEKD
Sbjct:   39 SHEEHKGRIDTIRKVAKRLDKIVAILLDTKGPEIRTHNMKDGI-IELERGNEVIVSMN-EVEGTPEKFSVTYENLINDVQVGSYILLDDGLIELQVKDIDHAKKEVKCDILNSGELKNKKGVNLPGVRVSLPGITEKD 174          
The following BLAST results are available for this feature:
BLAST of FC920308 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
KPYM_RABIT2.197e-2142.57Pyruvate kinase isozymes M1/M2 OS=Oryctolagus cuni... [more]
KPYM_FELCA2.197e-2141.89Pyruvate kinase isozyme M1 OS=Felis catus GN=PKM2 ... [more]
KPYK_STAHJ2.869e-2140.58Pyruvate kinase OS=Staphylococcus haemolyticus (st... [more]
KPYK_LEIME2.869e-2139.01Pyruvate kinase OS=Leishmania mexicana GN=PYK PE=1... [more]
KPYK_STAAW3.747e-2142.03Pyruvate kinase OS=Staphylococcus aureus (strain M... [more]
KPYK_STAAS3.747e-2142.03Pyruvate kinase OS=Staphylococcus aureus (strain M... [more]
KPYK_STAAR3.747e-2142.03Pyruvate kinase OS=Staphylococcus aureus (strain M... [more]
KPYK_STAAN3.747e-2142.03Pyruvate kinase OS=Staphylococcus aureus (strain N... [more]
KPYK_STAAM3.747e-2142.03Pyruvate kinase OS=Staphylococcus aureus (strain M... [more]
KPYK_STAAC3.747e-2142.03Pyruvate kinase OS=Staphylococcus aureus (strain C... [more]

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Properties
Property NameValue
Genbank descriptionC32006F09EF RVDevelop1 Citrus clementina cDNA clone C32006F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920308 ID=FC920308; Name=FC920308; organism=Citrus clementina; type=EST; length=427bp
ATCTCATGAGTATCACCAGGAAACGCTTAATAATCTCAGAACTGCCATGG
TCAATACTGGGATTCTCTGCGCTGTTATGCTTGACACAAAGGGTCCAGAG
ATTCGAACTGGGTTCTTGAAAGATGGAAAGCCTATTCAGCTGAAACAAGG
TCAGGAAATTACCATATCTACTGATTACACCATAAAGGGTGACGAGAACA
TGATTTGCATGAGCTACAAAAAGTTGGCAGTGGATGTCCAGCCAGGGAGT
GTGATACTTTGTTCAGACGGCACAATCTCATTCACTGTTCTAGAATGTAA
TGTGAAAGCTGGTTTGGTTAAATGCCGCTGTGAGAACTCTGCTATGCTTG
GTGAAAGGAAAAATGTTAATCTCCCAGGGGTTATTGTGGATCTCCCCACC
TTGACAGAGAAAGACAGGAAGATATCT
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