FC920308

Overview
NameFC920308
Unique NameFC920308
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length427
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7687 contig Ccv1_Contig7687:1..427. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920308 vs. ExPASy Swiss-Prot
Match: KPYR_MOUSE (Pyruvate kinase isozymes R/L OS=Mus musculus GN=Pklr PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.599e-17
Identity = 55/148 (37.16%), Postives = 79/148 (53.38%), Query Frame = 2
Query:    2 SHEYHQETLNNLRTAMVNTGIL------CAVMLDTKGPEIRTGFLKDG--KPIQLKQGQEITISTD--YTIKGDENMICMSYKKLAVDVQPGSVILCSDGTISFTVLECNVKAGLVKCRCENSAMLGERKNVNLPGVIVDLPTLTEKD 415
            SHEYH E++ N+R A  +           A+ LDTKGPEIRTG L+ G    +++ +G ++ ++ D  +  +GD   + + Y  +   V  G  I   DG IS  V +   + GLV    E+   LG RK VNLP   VDLP L+E+D
Sbjct:  123 SHEYHAESIANIREAAESFATSPLSYRPVAIALDTKGPEIRTGVLQGGPESEVEIVKGSQVLVTVDPKFRTRGDAKTVWVDYHNITQVVAVGGRIYIDDGLISLVVRKIGPE-GLVT-EVEHGGFLGNRKGVNLPNAEVDLPGLSEQD 268          
BLAST of FC920308 vs. ExPASy Swiss-Prot
Match: KPYK1_CANGA (Pyruvate kinase 1 OS=Candida glabrata GN=PYK1 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.313e-17
Identity = 51/142 (35.92%), Postives = 77/142 (54.23%), Query Frame = 2
Query:    2 SHEYHQETLNNLRTAM-VNTGILCAVMLDTKGPEIRTGFLKDGKPIQLKQGQEITISTD--YTIKGDENMICMSYKKLAVDVQPGSVILCSDGTISFTVLECNVKAGLVKCRCENSAMLGERKNVNLPGVIVDLPTLTEKDR 418
            S+EYH+  ++N R +  +  G   A+ LDTKGPEIRTG   +     +    E+  +TD  Y    D+ ++ + YK +   +  G +I   DG +SF VL+  V    +K +  N+  +   K VNLPG  VDLP L+EKD+
Sbjct:   57 SYEYHKSVIDNARKSEELYPGRPLAIALDTKGPEIRTGTTTNEVDYPIPPNHEMIFTTDDKYAKACDDKIMYLDYKNITKVISAGRIIYVDDGVLSFEVLQV-VDDKTLKVKSLNAGKICSHKGVNLPGTDVDLPALSEKDK 197          
BLAST of FC920308 vs. ExPASy Swiss-Prot
Match: KPYK2_SYNY3 (Pyruvate kinase 2 OS=Synechocystis sp. (strain PCC 6803) GN=pyk2 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.844e-15
Identity = 46/140 (32.86%), Postives = 72/140 (51.43%), Query Frame = 2
Query:    5 HEYHQETLNNLRTAMVNTGILCAVMLDTKGPEIRTG-FLKDGKPIQLKQGQEITISTDYTIKGDENMICMSYKKLAVDVQPGSVILCSDGTISFTVLECNVKAGLVKCRCENSAMLGERKNVNLPGVIVDLPTLTEKDRK 421
            H YHQ+++  +R           ++ D +GP+IR G FL D   +QLK G   T+ T   ++  E +  +SY+ LA +V  G+ IL  DG +   V E +  A  + CR      L   K VN PGV + +  +T+KD++
Sbjct:   46 HAYHQQSIRLIRQIAFELNQPVGILQDLQGPKIRVGKFLNDAGSVQLKNGDPYTL-TSRPVECTETISSISYEYLADEVPSGARILLDDGKLEMLVEEVDTVARDLHCRVIVGGTLSSNKGVNFPGVCLSVKAMTDKDKE 184          
BLAST of FC920308 vs. ExPASy Swiss-Prot
Match: KPYK2_YEAST (Pyruvate kinase 2 OS=Saccharomyces cerevisiae GN=PYK2 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.167e-14
Identity = 48/143 (33.57%), Postives = 75/143 (52.45%), Query Frame = 2
Query:    2 SHEYHQETLNN-LRTAMVNTGILCAVMLDTKGPEIRTGFLKDGKPIQLKQGQEITISTDYTIKGDEN--MICMSYKKLAVDVQPGSVILCSDGTISFTVLECNVKAGLVKCRCENSAMLGERKNVNLPGVIVDLPTLTEKDRK 421
            S+E+HQ  + N +++     G   A+ LDTKGPEIRTG   + + + +    ++  +TD +     N  ++ + Y  L   + PG  I   DG +SF VL+   ++ L + +  NS  +   K VNLP   VDLP L+ KD K
Sbjct:   58 SYEFHQSVIENAVKSEQQFPGRPLAIALDTKGPEIRTGRTLNDQDLYIPVDHQMIFTTDASFANTSNDKIMYIDYANLTKVIVPGRFIYVDDGILSFKVLQIIDESNL-RVQAVNSGYIASHKGVNLPNTDVDLPPLSAKDMK 199          
BLAST of FC920308 vs. ExPASy Swiss-Prot
Match: KPYK_COREF (Pyruvate kinase OS=Corynebacterium efficiens GN=pyk PE=3 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 7.567e-14
Identity = 42/139 (30.22%), Postives = 72/139 (51.80%), Query Frame = 2
Query:    5 HEYHQETLNNLRTAMVNTGILCAVMLDTKGPEIRTGFLKDGKPIQLKQGQEITISTDYTIKGDENMICMSYKKLAVDVQPGSVILCSDGTISFTVLECNVKAGLVKCRCENSAMLGERKNVNLPGVIVDLPTLTEKDRK 421
            H  H++    +R A   TG    ++ D +GP+IR G  K+G  +  + G+ + I+ D  ++G  + +  +YK LA D +PG  +L  DG +    +  +V+   V C       +   K V+LPG+ + +P L+EKD K
Sbjct:   41 HPDHEQNYKWVREATDKTGRAVGILADLQGPKIRLGRFKEGSTV-WETGETVRITVD-DVEGTHDRVSTTYKNLAKDARPGDRLLVDDGKVGLVCV--SVEGNDVICEVTEGGPVSNNKGVSLPGMDISVPALSEKDIK 175          
BLAST of FC920308 vs. ExPASy Swiss-Prot
Match: KPYK_CORGL (Pyruvate kinase OS=Corynebacterium glutamicum GN=pyk PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.686e-13
Identity = 42/137 (30.66%), Postives = 70/137 (51.09%), Query Frame = 2
Query:    5 HEYHQETLNNLRTAMVNTGILCAVMLDTKGPEIRTGFLKDGKPIQLKQGQEITISTDYTIKGDENMICMSYKKLAVDVQPGSVILCSDGTISFTVLECNVKAGLVKCRCENSAMLGERKNVNLPGVIVDLPTLTEKD 415
            H  H++    +R A   TG    ++ D +GP+IR G   DG  +  + G+ I I+ D  ++G  + +  +YK LA D +PG  +L  DG +    +  +V+   V C       +   K V+LPG+ + +P L+EKD
Sbjct:   41 HPDHEQNYKWVREAAEKTGRAVGILADLQGPKIRLGRFTDGATV-WENGETIRITVD-DVEGTHDRVSTTYKNLAKDAKPGDRLLVDDGKVGLVCV--SVEGNDVICEVVEGGPVSNNKGVSLPGMDISVPALSEKD 173          
BLAST of FC920308 vs. ExPASy Swiss-Prot
Match: KPYG_TOBAC (Pyruvate kinase isozyme G, chloroplastic OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.427e-12
Identity = 46/139 (33.09%), Postives = 76/139 (54.68%), Query Frame = 2
Query:    5 HEYHQETLNNLR--TAMVNTGILCAVMLDTKGPEIRTGFLKDGKPIQLKQGQEITISTDYTIKGDENMICMSYKKLAVDVQPGSVILCSDGTISFTVLECNVKAGLVKCRCENSAMLGERKNVNLPGVIVDLPTLTEKD 415
            H  HQ T++ ++   A     ++ A+MLDTKGPE+ +G +   KPI LK+GQE   S    +   E+ + ++Y     DV+ G ++L   G +S  V   +  + +VKC   +   L  R+++N+ G    LP++TEKD
Sbjct:  129 HASHQRTIDLVKEYNAQFEDKVI-AIMLDTKGPEVISGDVP--KPILLKEGQEFNFSIKRGVS-TEDTVSVNYDDFINDVEAGDILLVDGGMMSLAVK--SKTSDIVKCEVIDGGELKSRRHLNVRGKSATLPSITEKD 261          
BLAST of FC920308 vs. ExPASy Swiss-Prot
Match: KPYK_BORBU (Pyruvate kinase OS=Borrelia burgdorferi GN=pyk PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.423e-12
Identity = 42/139 (30.22%), Postives = 77/139 (55.40%), Query Frame = 2
Query:    2 SHEYHQETLNNLRTAMVNTGILCAVMLDTKGPEIRTGFLKDGKPIQLKQGQEITISTDYTIKGDENMICMSYKKLAVDVQPGSVILCSDGTISFTVLECNVKAGLVKCRCENSAMLGERKNVNLPGVIVDLPTLTEKDR 418
            +H+ H++T+  +      +  + A+M+DTKGPE+RT  +++  PI +K G ++ IST      + N    +Y     +V  GS +L  DG +  TV+   +   L+ C  +N   +  +K++N PG+ + L ++TEKD+
Sbjct:   38 AHQSHEDTIKVIDNVRKISNKI-ALMIDTKGPEVRTANIEN--PIIVKTGDKVIISTSPI--NEPNNFQTNYDGFVKEVPQGSKVLIDDGELEMTVV-AKLPDRLI-CEIKNDGQIKNKKSINTPGISLKLQSVTEKDK 169          
BLAST of FC920308 vs. ExPASy Swiss-Prot
Match: KPYK_CHLPN (Pyruvate kinase OS=Chlamydia pneumoniae GN=pyk PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.061e-11
Identity = 45/138 (32.61%), Postives = 73/138 (52.90%), Query Frame = 2
Query:    2 SHEYHQETLNNLRTAMVNTGILCAVMLDTKGPEIRTGFLKDGKPIQLKQGQEITISTDYTIKGDENMICMSYKKLAVDVQPGSVILCSDGTISFTVLECNVKAGLVKCRCENSAMLGERKNVNLPGVIVDLPTLTEKD 415
            SHE H + +  L+       +  A+MLDTKGPEIR G +   +PI + QGQ++ + +       E  + +  K +   V  G+ +L  DG I   V+  + +A  ++    NS +L   K++++ GV V LP +TEKD
Sbjct:   40 SHETHGQAIGFLKELREQKRVPLAIMLDTKGPEIRLGNIP--QPISVSQGQKLRLVSSDIDGSAEGGVSLYPKGIFPFVPEGADVLIDDGYIHAVVV--SSEADSLELEFMNSGLLKSHKSLSIRGVDVALPFMTEKD 173          
BLAST of FC920308 vs. ExPASy Swiss-Prot
Match: KPYK2_AGRVI (Pyruvate kinase OS=Agrobacterium vitis GN=ttuE PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.692e-11
Identity = 46/138 (33.33%), Postives = 68/138 (49.28%), Query Frame = 2
Query:   14 HQETLNNLRTAMVNTGILCAVMLDTKGPEIRTGFLKDGKPIQLKQGQEITISTDYTIKGDENM--ICMSYKKLAVDVQPGSVILCSDGTISFTVLECNVKAGLVKCRCENSAMLGERKNVNLPGVIVDLPTLTEKDRK 421
            H E   N+R          AV+ D +GP+IR G L  G+ + L +G   TI      +G E M  I + ++++     PG  +L  DG I   ++E  V  G + C   N   L  RK VN+PG ++D+  LT KDR+
Sbjct:   48 HAEVYRNIRALEQEHDAAIAVLQDLQGPKIRIGVLAHGR-LDLARGS--TIGFILGREGGEGMNDIPLPHREIFEVAVPGMDLLIDDGRIKVRIME--VMDGRLVCEVLNGGALSNRKGVNVPGAVLDISPLTAKDRE 180          
The following BLAST results are available for this feature:
BLAST of FC920308 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
KPYR_MOUSE5.599e-1737.16Pyruvate kinase isozymes R/L OS=Mus musculus GN=Pk... [more]
KPYK1_CANGA7.313e-1735.92Pyruvate kinase 1 OS=Candida glabrata GN=PYK1 PE=3... [more]
KPYK2_SYNY36.844e-1532.86Pyruvate kinase 2 OS=Synechocystis sp. (strain PCC... [more]
KPYK2_YEAST1.167e-1433.57Pyruvate kinase 2 OS=Saccharomyces cerevisiae GN=P... [more]
KPYK_COREF7.567e-1430.22Pyruvate kinase OS=Corynebacterium efficiens GN=py... [more]
KPYK_CORGL1.686e-1330.66Pyruvate kinase OS=Corynebacterium glutamicum GN=p... [more]
KPYG_TOBAC1.427e-1233.09Pyruvate kinase isozyme G, chloroplastic OS=Nicoti... [more]
KPYK_BORBU5.423e-1230.22Pyruvate kinase OS=Borrelia burgdorferi GN=pyk PE=... [more]
KPYK_CHLPN2.061e-1132.61Pyruvate kinase OS=Chlamydia pneumoniae GN=pyk PE=... [more]
KPYK2_AGRVI2.692e-1133.33Pyruvate kinase OS=Agrobacterium vitis GN=ttuE PE=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32006F09EF RVDevelop1 Citrus clementina cDNA clone C32006F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920308 ID=FC920308; Name=FC920308; organism=Citrus clementina; type=EST; length=427bp
ATCTCATGAGTATCACCAGGAAACGCTTAATAATCTCAGAACTGCCATGG
TCAATACTGGGATTCTCTGCGCTGTTATGCTTGACACAAAGGGTCCAGAG
ATTCGAACTGGGTTCTTGAAAGATGGAAAGCCTATTCAGCTGAAACAAGG
TCAGGAAATTACCATATCTACTGATTACACCATAAAGGGTGACGAGAACA
TGATTTGCATGAGCTACAAAAAGTTGGCAGTGGATGTCCAGCCAGGGAGT
GTGATACTTTGTTCAGACGGCACAATCTCATTCACTGTTCTAGAATGTAA
TGTGAAAGCTGGTTTGGTTAAATGCCGCTGTGAGAACTCTGCTATGCTTG
GTGAAAGGAAAAATGTTAATCTCCCAGGGGTTATTGTGGATCTCCCCACC
TTGACAGAGAAAGACAGGAAGATATCT
back to top