FC920308

Overview
NameFC920308
Unique NameFC920308
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length427
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7687 contig Ccv1_Contig7687:1..427. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC920308 vs. ExPASy Swiss-Prot
Match: KPYK_THEMA (Pyruvate kinase OS=Thermotoga maritima GN=pyk PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.591e-11
Identity = 39/117 (33.33%), Postives = 70/117 (59.83%), Query Frame = 2 
Query:   71 AVMLDTKGPEIRTGFLKDGKPIQLKQGQEITISTDYTIKGDENMICMSYKKLAVDVQPGSVILCSDGTISFTVLECNVKAGLVKCRCENSAMLGERKNVNLPGVIVDLPTLTEKDRK 421
            A+++D  GP+IRTG+L+  + ++LK+GQ  T++T   I G+E+++ ++   L  DV+ G  IL SDG I   V+E       VK   +    +  R+ VN+P   + + ++T++DR+
Sbjct:   62 AILIDLAGPKIRTGYLEK-EFVELKEGQIFTLTTK-EILGNEHIVSVNLSSLPKDVKKGDTILLSDGEIVLEVIETTDTE--VKTVVKVGGKITHRRGVNVPTADLSVESITDRDRE 174
The following BLAST results are available for this feature:
BLAST of FC920308 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
KPYK_THEMA4.591e-1133.33Pyruvate kinase OS=Thermotoga maritima GN=pyk PE=1... [more]

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Properties
Property NameValue
Genbank descriptionC32006F09EF RVDevelop1 Citrus clementina cDNA clone C32006F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920308 ID=FC920308; Name=FC920308; organism=Citrus clementina; type=EST; length=427bp
ATCTCATGAGTATCACCAGGAAACGCTTAATAATCTCAGAACTGCCATGG
TCAATACTGGGATTCTCTGCGCTGTTATGCTTGACACAAAGGGTCCAGAG
ATTCGAACTGGGTTCTTGAAAGATGGAAAGCCTATTCAGCTGAAACAAGG
TCAGGAAATTACCATATCTACTGATTACACCATAAAGGGTGACGAGAACA
TGATTTGCATGAGCTACAAAAAGTTGGCAGTGGATGTCCAGCCAGGGAGT
GTGATACTTTGTTCAGACGGCACAATCTCATTCACTGTTCTAGAATGTAA
TGTGAAAGCTGGTTTGGTTAAATGCCGCTGTGAGAACTCTGCTATGCTTG
GTGAAAGGAAAAATGTTAATCTCCCAGGGGTTATTGTGGATCTCCCCACC
TTGACAGAGAAAGACAGGAAGATATCT
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